Gchil7040.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7040.t1
Unique NameGchil7040.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length195
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000131_piloncontigtig00000131_pilon:246756..247421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707154.1
Preferred nameRPS19
PFAMsRibosomal_S19e
Max annot lvl2759|Eukaryota
KEGG koko:K02966
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000028,GO:0000184,GO:0000462,GO:0000956,GO:0001906,GO:0002181,GO:0002262,GO:0002376,GO:0002520,GO:0002548,GO:0002682,GO:0002683,GO:0002684,GO:0002697,GO:0002698,GO:0002699,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0006996,GO:0006997,GO:0007000,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016477,GO:0017134,GO:0019222,GO:0019439,GO:0019538,GO:0019730,GO:0019838,GO:0019899,GO:0019900,GO:0019901,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0023052,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030312,GO:0030490,GO:0030595,GO:0031347,GO:0031348,GO:0031349,GO:0031369,GO:0031503,GO:0031640,GO:0031974,GO:0031981,GO:0032101,GO:0032102,GO:0032103,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033036,GO:0033365,GO:0034101,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035821,GO:0040011,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0042330,GO:0042592,GO:0042742,GO:0042788,GO:0042802,GO:0042803,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044364,GO:0044391,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045088,GO:0045089,GO:0045184,GO:0045595,GO:0045824,GO:0046483,GO:0046700,GO:0046907,GO:0046983,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048534,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0048872,GO:0050657,GO:0050658,GO:0050727,GO:0050728,GO:0050729,GO:0050776,GO:0050777,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050829,GO:0050896,GO:0050900,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051240,GO:0051241,GO:0051259,GO:0051262,GO:0051270,GO:0051272,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0055044,GO:0060255,GO:0060263,GO:0060264,GO:0060265,GO:0060266,GO:0060267,GO:0060268,GO:0060284,GO:0060326,GO:0061844,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070887,GO:0070925,GO:0070972,GO:0071166,GO:0071426,GO:0071428,GO:0071674,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0080134,GO:0090150,GO:0090304,GO:0097064,GO:0097159,GO:0097529,GO:0098542,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Evalue1.41e-54
EggNOG OGsCOG2238@1|root,KOG3411@2759|Eukaryota
Descriptionribosomal small subunit assembly
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7040Gchil7040Gracilaria chilensis NLEC103_M9 malegenetig00000131_pilon 246756..247421 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7040.t1Gchil7040.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000131_pilon 246756..247421 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7040.t1.stop1Gchil7040.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000131_pilon 246756..246758 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7040.t1.CDS1Gchil7040.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000131_pilon 246756..247015 -
Gchil7040.t1.CDS2Gchil7040.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000131_pilon 247097..247421 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7040.t1.exon1Gchil7040.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000131_pilon 246756..247015 -
Gchil7040.t1.exon2Gchil7040.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000131_pilon 247097..247421 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7040.t1.intron1Gchil7040.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000131_pilon 247016..247096 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7040.t1.start1Gchil7040.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000131_pilon 247419..247421 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7040.t1 ID=Gchil7040.t1|Name=Gchil7040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=195bp
MRLSGSQTGRPSSTAFQDAELIVVRGATLAQLLLFSGPCLLPPRTTFSNM
AANGCTVKDVPAAEFITTYAAYLKRVGLVELPPWVDTVKTAPSKELAPYD
QDWLYIRIASIARKIYIRGGIGTGEFRKIYGCRQRRGMKPSRSSKASGGL
IRNALQQLERLGVIEKDPRGGRRLTTKGQAEMDTQAGQCLSLNA*
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spliced messenger RNA

>Gchil7040.t1 ID=Gchil7040.t1|Name=Gchil7040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00000131_pilon:246756..247421- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCTCTCCGGCAGCCAAACTGGCAGGCCGTCGTCGACGGCGTTCCA
AGATGCGGAACTGATCGTTGTCCGTGGTGCTACACTTGCCCAGCTCCTAC
TCTTTTCGGGTCCCTGTTTGCTTCCGCCTCGCACTACTTTTTCTAACATG
GCCGCCAACGGTTGCACTGTCAAGGATGTGCCTGCTGCGGAGTTTATCAC
CACGTACGCTGCGTATCTCAAGCGCGTGGGCCTTGTCGAATTGCCGCCGT
GGGTCGATACCGTGAAGACTGCGCCCAGCAAAGAACTCGCTCCATACGAT
CAGGACTGGCTTTACATTAGGATCGCTTCCATTGCGAGAAAGATTTACAT
TCGTGGAGGTATTGGAACCGGTGAATTTCGAAAGATCTACGGATGCCGCC
AGAGACGAGGAATGAAGCCTTCTCGTAGCTCCAAGGCTTCTGGCGGGTTG
ATTCGAAACGCGTTGCAACAATTGGAACGACTTGGTGTCATCGAAAAGGA
CCCGCGCGGCGGGCGACGACTCACTACGAAGGGCCAGGCTGAGATGGACA
CTCAGGCTGGACAATGCTTAAGTTTAAACGCGTAA
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protein sequence of Gchil7040.t1

>Gchil7040.t1 ID=Gchil7040.t1|Name=Gchil7040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=195bp
MRLSGSQTGRPSSTAFQDAELIVVRGATLAQLLLFSGPCLLPPRTTFSNM
AANGCTVKDVPAAEFITTYAAYLKRVGLVELPPWVDTVKTAPSKELAPYD
QDWLYIRIASIARKIYIRGGIGTGEFRKIYGCRQRRGMKPSRSSKASGGL
IRNALQQLERLGVIEKDPRGGRRLTTKGQAEMDTQAGQCLSLNA*
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mRNA from alignment at tig00000131_pilon:246756..247421-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7040.t1 ID=Gchil7040.t1|Name=Gchil7040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000131_pilon:246756..247421- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCCTCTCCGGCAGCCAAACTGGCAGGCCGTCGTCGACGGCGTTCCA
AGATGCGGAACTGATCGTTGTCCGTGGTGCTACACTTGCCCAGCTCCTAC
TCTTTTCGGGTCCCTGTTTGCTTCCGCCTCGCACTACTTTTTCTAACATG
GCCGCCAACGGTTGCACTGTCAAGGATGTGCCTGCTGCGGAGTTTATCAC
CACGTACGCTGCGTATCTCAAGCGCGTGGGCCTTGTCGAATTGCCGCCGT
GGGTCGATACCGTGAAGACTGCGCCCAGCAAAGAACTCGCTCCATACGAT
CAGGACTGGCTTTACATTAGGATCGGTAAGTGCTCAAAATTCTCGCCTTT
GTTTTTCGTCATGGTGCGGCAATGAGCTCCTTTCTAACTGTTCGATGCAA
ACGTAGCTTCCATTGCGAGAAAGATTTACATTCGTGGAGGTATTGGAACC
GGTGAATTTCGAAAGATCTACGGATGCCGCCAGAGACGAGGAATGAAGCC
TTCTCGTAGCTCCAAGGCTTCTGGCGGGTTGATTCGAAACGCGTTGCAAC
AATTGGAACGACTTGGTGTCATCGAAAAGGACCCGCGCGGCGGGCGACGA
CTCACTACGAAGGGCCAGGCTGAGATGGACACTCAGGCTGGACAATGCTT
AAGTTTAAACGCGTAA
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Coding sequence (CDS) from alignment at tig00000131_pilon:246756..247421-

>Gchil7040.t1 ID=Gchil7040.t1|Name=Gchil7040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=585bp|location=Sequence derived from alignment at tig00000131_pilon:246756..247421- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCCTCTCCGGCAGCCAAACTGGCAGGCCGTCGTCGACGGCGTTCCA
AGATGCGGAACTGATCGTTGTCCGTGGTGCTACACTTGCCCAGCTCCTAC
TCTTTTCGGGTCCCTGTTTGCTTCCGCCTCGCACTACTTTTTCTAACATG
GCCGCCAACGGTTGCACTGTCAAGGATGTGCCTGCTGCGGAGTTTATCAC
CACGTACGCTGCGTATCTCAAGCGCGTGGGCCTTGTCGAATTGCCGCCGT
GGGTCGATACCGTGAAGACTGCGCCCAGCAAAGAACTCGCTCCATACGAT
CAGGACTGGCTTTACATTAGGATCGCTTCCATTGCGAGAAAGATTTACAT
TCGTGGAGGTATTGGAACCGGTGAATTTCGAAAGATCTACGGATGCCGCC
AGAGACGAGGAATGAAGCCTTCTCGTAGCTCCAAGGCTTCTGGCGGGTTG
ATTCGAAACGCGTTGCAACAATTGGAACGACTTGGTGTCATCGAAAAGGA
CCCGCGCGGCGGGCGACGACTCACTACGAAGGGCCAGGCTGAGATGGACA
CTCAGGCTGGACAATGCTTAAGTTTAAACGCGTAA
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