Gchil8865.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8865.t1
Unique Name	Gchil8865.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	584

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000120_pilon	contig	tig00000120_pilon:64627..66378 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	28532.XP_010525516.1
PFAMs	MCM_bind
Max annot lvl	35493\|Streptophyta
GOs	GO:0000228,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0009987,GO:0016043,GO:0022402,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0042555,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0098813,GO:1901360,GO:1901576
Evalue	8.22e-52
EggNOG OGs	KOG2545@1\|root,KOG2545@2759\|Eukaryota,37N95@33090\|Viridiplantae,3GC6I@35493\|Streptophyta,3HSGG@3699\|Brassicales
Description	Mini-chromosome maintenance replisome factor
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8865	Gchil8865	Gracilaria chilensis NLEC103_M9 male	gene	tig00000120_pilon 64627..66378 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8865.t1.start1	Gchil8865.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000120_pilon 64627..64629 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8865.t1.CDS1	Gchil8865.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000120_pilon 64627..66378 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8865.t1.exon1	Gchil8865.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000120_pilon 64627..66378 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8865.t1.stop1	Gchil8865.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000120_pilon 66376..66378 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8865.t1	Gchil8865.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000120_pilon 64627..66378 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000120_pilon:64627..66378+
coding sequence from alignment at tig00000120_pilon:64627..66378+

mRNA sequence

>Gchil8865.t1 ID=Gchil8865.t1|Name=Gchil8865.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=584bp
MVGITTNFTKEPVVSAHTLINQPGTLVDSVLSTLIPPPLKLIPYVDDPRA
KVGTWVRFDALVQDIWDSELFVKSSPEGHSGLLVENAAASDHPAAELCER
LPVYLVSLPGQTRWTKPDPFLSLSLPRVSNRIGGQKRLREADEPMCDAIL
EESHSAPSTISTSYPEMQVNSKRPCTNGVSEVPALPCIGLNLPVSNQPGA
IAIVAKLYDADKARDLKINTMVQVVGVLQNGLEFALNGSMDQNDPLQAEV
IARNPGNVKRLHVVQWREMEPWELNPLTKTLGTKGIIEAKKEAKSMAGGL
RELLVRYLSSALYNDSLAAEYLLMCLLSRPIRTNGGNVLGKLSINLVLPN
DSSLEVSEELTKAIRHLCPTVVDIDVNISSLNATEVYPRKDYDMNRLKAG
ALQMAAGTCLIGNESKMTNGELAERGVKNIRALSSVSQRCSMPIDFMYYE
SEVGVDCCTVLVSKGGKSIVSADVIVRVKPNLGLECQGFRAYSPDLIRKL
RLAVALFAEDGEFDISLEATRDVEKVYVEARRRGEAKDGQETLQKWLSVA
RCCARTFGENSLSIDRWRYAVNLERRREQRERC*

spliced messenger RNA

>Gchil8865.t1 ID=Gchil8865.t1|Name=Gchil8865.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1752bp|location=Sequence derived from alignment at tig00000120_pilon:64627..66378+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGGCATAACCACCAATTTCACCAAGGAGCCCGTTGTATCCGCGCA
TACTCTCATCAACCAACCGGGCACTTTGGTCGATAGTGTTCTATCTACCC
TAATACCCCCCCCGTTGAAGCTTATCCCGTATGTTGACGACCCCCGTGCA
AAGGTAGGAACTTGGGTGCGTTTCGATGCATTGGTCCAAGATATCTGGGA
TTCTGAACTCTTCGTCAAATCTTCGCCGGAAGGGCACTCTGGTTTACTGG
TTGAGAATGCTGCAGCATCCGACCACCCGGCTGCTGAGTTATGTGAGAGA
CTACCAGTGTATCTTGTTTCGCTTCCAGGTCAGACGAGGTGGACTAAACC
GGACCCGTTTCTCTCACTTTCACTGCCTCGAGTTTCCAACAGAATCGGAG
GCCAAAAGCGACTTCGTGAAGCCGACGAACCAATGTGCGACGCGATTCTG
GAGGAAAGCCATTCTGCGCCATCCACCATCTCCACGTCATATCCAGAGAT
GCAGGTAAACTCCAAGAGACCATGTACTAACGGTGTTTCAGAAGTTCCAG
CACTGCCATGTATAGGTCTTAATTTGCCAGTTTCCAATCAGCCTGGCGCG
ATCGCGATCGTTGCGAAATTATATGACGCCGATAAAGCTCGCGACTTGAA
GATTAATACTATGGTGCAAGTTGTCGGTGTGCTACAGAACGGATTGGAAT
TTGCATTGAATGGTAGTATGGATCAGAATGACCCGCTTCAGGCCGAAGTT
ATAGCCCGCAACCCTGGGAATGTGAAACGTTTACACGTCGTTCAATGGAG
GGAGATGGAGCCCTGGGAGCTCAACCCCTTAACAAAGACGCTCGGTACTA
AAGGAATTATCGAAGCGAAGAAAGAAGCCAAGAGTATGGCTGGTGGTCTT
CGAGAACTGCTAGTGCGTTATTTATCCTCTGCTCTCTACAATGATTCGCT
TGCCGCCGAGTACTTGCTGATGTGCCTTTTGTCCAGACCAATACGTACAA
ATGGTGGGAATGTCCTCGGCAAACTATCGATCAATTTAGTGCTACCGAAT
GACTCTTCGCTCGAAGTGAGCGAAGAACTCACCAAAGCTATTAGACATCT
ATGCCCAACCGTAGTAGATATTGACGTGAACATTTCGTCCTTGAACGCGA
CAGAGGTGTACCCACGAAAAGATTACGACATGAACAGGTTGAAAGCCGGT
GCCCTGCAGATGGCTGCGGGAACCTGCCTCATTGGTAATGAAAGCAAGAT
GACAAATGGTGAATTGGCCGAGAGAGGGGTGAAGAATATAAGGGCTTTGA
GTTCTGTGTCACAGAGATGCAGTATGCCCATTGATTTCATGTACTATGAA
TCTGAGGTTGGTGTCGATTGCTGTACCGTCCTGGTGTCGAAAGGTGGAAA
ATCAATCGTTTCAGCCGATGTGATCGTCCGAGTAAAGCCGAACCTCGGTC
TTGAGTGTCAAGGATTCAGGGCATACTCTCCAGACTTGATAAGAAAGCTT
AGACTTGCAGTGGCACTCTTTGCTGAAGATGGTGAGTTCGATATCTCCCT
AGAAGCAACTAGAGACGTGGAAAAGGTTTACGTTGAGGCCAGACGACGAG
GCGAGGCCAAAGATGGTCAAGAAACTCTGCAAAAGTGGTTGAGCGTAGCA
AGATGCTGCGCTCGAACATTCGGAGAGAATTCGCTGAGCATTGACAGATG
GCGGTATGCTGTGAATCTGGAGCGTCGACGGGAACAACGTGAGAGATGCT
AG

protein sequence of Gchil8865.t1

>Gchil8865.t1 ID=Gchil8865.t1|Name=Gchil8865.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=584bp
MVGITTNFTKEPVVSAHTLINQPGTLVDSVLSTLIPPPLKLIPYVDDPRA
KVGTWVRFDALVQDIWDSELFVKSSPEGHSGLLVENAAASDHPAAELCER
LPVYLVSLPGQTRWTKPDPFLSLSLPRVSNRIGGQKRLREADEPMCDAIL
EESHSAPSTISTSYPEMQVNSKRPCTNGVSEVPALPCIGLNLPVSNQPGA
IAIVAKLYDADKARDLKINTMVQVVGVLQNGLEFALNGSMDQNDPLQAEV
IARNPGNVKRLHVVQWREMEPWELNPLTKTLGTKGIIEAKKEAKSMAGGL
RELLVRYLSSALYNDSLAAEYLLMCLLSRPIRTNGGNVLGKLSINLVLPN
DSSLEVSEELTKAIRHLCPTVVDIDVNISSLNATEVYPRKDYDMNRLKAG
ALQMAAGTCLIGNESKMTNGELAERGVKNIRALSSVSQRCSMPIDFMYYE
SEVGVDCCTVLVSKGGKSIVSADVIVRVKPNLGLECQGFRAYSPDLIRKL
RLAVALFAEDGEFDISLEATRDVEKVYVEARRRGEAKDGQETLQKWLSVA
RCCARTFGENSLSIDRWRYAVNLERRREQRERC*

mRNA from alignment at tig00000120_pilon:64627..66378+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8865.t1 ID=Gchil8865.t1|Name=Gchil8865.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1752bp|location=Sequence derived from alignment at tig00000120_pilon:64627..66378+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTGGCATAACCACCAATTTCACCAAGGAGCCCGTTGTATCCGCGCA
TACTCTCATCAACCAACCGGGCACTTTGGTCGATAGTGTTCTATCTACCC
TAATACCCCCCCCGTTGAAGCTTATCCCGTATGTTGACGACCCCCGTGCA
AAGGTAGGAACTTGGGTGCGTTTCGATGCATTGGTCCAAGATATCTGGGA
TTCTGAACTCTTCGTCAAATCTTCGCCGGAAGGGCACTCTGGTTTACTGG
TTGAGAATGCTGCAGCATCCGACCACCCGGCTGCTGAGTTATGTGAGAGA
CTACCAGTGTATCTTGTTTCGCTTCCAGGTCAGACGAGGTGGACTAAACC
GGACCCGTTTCTCTCACTTTCACTGCCTCGAGTTTCCAACAGAATCGGAG
GCCAAAAGCGACTTCGTGAAGCCGACGAACCAATGTGCGACGCGATTCTG
GAGGAAAGCCATTCTGCGCCATCCACCATCTCCACGTCATATCCAGAGAT
GCAGGTAAACTCCAAGAGACCATGTACTAACGGTGTTTCAGAAGTTCCAG
CACTGCCATGTATAGGTCTTAATTTGCCAGTTTCCAATCAGCCTGGCGCG
ATCGCGATCGTTGCGAAATTATATGACGCCGATAAAGCTCGCGACTTGAA
GATTAATACTATGGTGCAAGTTGTCGGTGTGCTACAGAACGGATTGGAAT
TTGCATTGAATGGTAGTATGGATCAGAATGACCCGCTTCAGGCCGAAGTT
ATAGCCCGCAACCCTGGGAATGTGAAACGTTTACACGTCGTTCAATGGAG
GGAGATGGAGCCCTGGGAGCTCAACCCCTTAACAAAGACGCTCGGTACTA
AAGGAATTATCGAAGCGAAGAAAGAAGCCAAGAGTATGGCTGGTGGTCTT
CGAGAACTGCTAGTGCGTTATTTATCCTCTGCTCTCTACAATGATTCGCT
TGCCGCCGAGTACTTGCTGATGTGCCTTTTGTCCAGACCAATACGTACAA
ATGGTGGGAATGTCCTCGGCAAACTATCGATCAATTTAGTGCTACCGAAT
GACTCTTCGCTCGAAGTGAGCGAAGAACTCACCAAAGCTATTAGACATCT
ATGCCCAACCGTAGTAGATATTGACGTGAACATTTCGTCCTTGAACGCGA
CAGAGGTGTACCCACGAAAAGATTACGACATGAACAGGTTGAAAGCCGGT
GCCCTGCAGATGGCTGCGGGAACCTGCCTCATTGGTAATGAAAGCAAGAT
GACAAATGGTGAATTGGCCGAGAGAGGGGTGAAGAATATAAGGGCTTTGA
GTTCTGTGTCACAGAGATGCAGTATGCCCATTGATTTCATGTACTATGAA
TCTGAGGTTGGTGTCGATTGCTGTACCGTCCTGGTGTCGAAAGGTGGAAA
ATCAATCGTTTCAGCCGATGTGATCGTCCGAGTAAAGCCGAACCTCGGTC
TTGAGTGTCAAGGATTCAGGGCATACTCTCCAGACTTGATAAGAAAGCTT
AGACTTGCAGTGGCACTCTTTGCTGAAGATGGTGAGTTCGATATCTCCCT
AGAAGCAACTAGAGACGTGGAAAAGGTTTACGTTGAGGCCAGACGACGAG
GCGAGGCCAAAGATGGTCAAGAAACTCTGCAAAAGTGGTTGAGCGTAGCA
AGATGCTGCGCTCGAACATTCGGAGAGAATTCGCTGAGCATTGACAGATG
GCGGTATGCTGTGAATCTGGAGCGTCGACGGGAACAACGTGAGAGATGCT
AG

Coding sequence (CDS) from alignment at tig00000120_pilon:64627..66378+

>Gchil8865.t1 ID=Gchil8865.t1|Name=Gchil8865.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1752bp|location=Sequence derived from alignment at tig00000120_pilon:64627..66378+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTGGCATAACCACCAATTTCACCAAGGAGCCCGTTGTATCCGCGCA
TACTCTCATCAACCAACCGGGCACTTTGGTCGATAGTGTTCTATCTACCC
TAATACCCCCCCCGTTGAAGCTTATCCCGTATGTTGACGACCCCCGTGCA
AAGGTAGGAACTTGGGTGCGTTTCGATGCATTGGTCCAAGATATCTGGGA
TTCTGAACTCTTCGTCAAATCTTCGCCGGAAGGGCACTCTGGTTTACTGG
TTGAGAATGCTGCAGCATCCGACCACCCGGCTGCTGAGTTATGTGAGAGA
CTACCAGTGTATCTTGTTTCGCTTCCAGGTCAGACGAGGTGGACTAAACC
GGACCCGTTTCTCTCACTTTCACTGCCTCGAGTTTCCAACAGAATCGGAG
GCCAAAAGCGACTTCGTGAAGCCGACGAACCAATGTGCGACGCGATTCTG
GAGGAAAGCCATTCTGCGCCATCCACCATCTCCACGTCATATCCAGAGAT
GCAGGTAAACTCCAAGAGACCATGTACTAACGGTGTTTCAGAAGTTCCAG
CACTGCCATGTATAGGTCTTAATTTGCCAGTTTCCAATCAGCCTGGCGCG
ATCGCGATCGTTGCGAAATTATATGACGCCGATAAAGCTCGCGACTTGAA
GATTAATACTATGGTGCAAGTTGTCGGTGTGCTACAGAACGGATTGGAAT
TTGCATTGAATGGTAGTATGGATCAGAATGACCCGCTTCAGGCCGAAGTT
ATAGCCCGCAACCCTGGGAATGTGAAACGTTTACACGTCGTTCAATGGAG
GGAGATGGAGCCCTGGGAGCTCAACCCCTTAACAAAGACGCTCGGTACTA
AAGGAATTATCGAAGCGAAGAAAGAAGCCAAGAGTATGGCTGGTGGTCTT
CGAGAACTGCTAGTGCGTTATTTATCCTCTGCTCTCTACAATGATTCGCT
TGCCGCCGAGTACTTGCTGATGTGCCTTTTGTCCAGACCAATACGTACAA
ATGGTGGGAATGTCCTCGGCAAACTATCGATCAATTTAGTGCTACCGAAT
GACTCTTCGCTCGAAGTGAGCGAAGAACTCACCAAAGCTATTAGACATCT
ATGCCCAACCGTAGTAGATATTGACGTGAACATTTCGTCCTTGAACGCGA
CAGAGGTGTACCCACGAAAAGATTACGACATGAACAGGTTGAAAGCCGGT
GCCCTGCAGATGGCTGCGGGAACCTGCCTCATTGGTAATGAAAGCAAGAT
GACAAATGGTGAATTGGCCGAGAGAGGGGTGAAGAATATAAGGGCTTTGA
GTTCTGTGTCACAGAGATGCAGTATGCCCATTGATTTCATGTACTATGAA
TCTGAGGTTGGTGTCGATTGCTGTACCGTCCTGGTGTCGAAAGGTGGAAA
ATCAATCGTTTCAGCCGATGTGATCGTCCGAGTAAAGCCGAACCTCGGTC
TTGAGTGTCAAGGATTCAGGGCATACTCTCCAGACTTGATAAGAAAGCTT
AGACTTGCAGTGGCACTCTTTGCTGAAGATGGTGAGTTCGATATCTCCCT
AGAAGCAACTAGAGACGTGGAAAAGGTTTACGTTGAGGCCAGACGACGAG
GCGAGGCCAAAGATGGTCAAGAAACTCTGCAAAAGTGGTTGAGCGTAGCA
AGATGCTGCGCTCGAACATTCGGAGAGAATTCGCTGAGCATTGACAGATG
GCGGTATGCTGTGAATCTGGAGCGTCGACGGGAACAACGTGAGAGATGCT
AG