Gchil8859.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8859.t1
Unique NameGchil8859.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length666
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:48552..50949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002951627.1
Preferred nameCYN71
PFAMsPro_isomerase,WD40
Max annot lvl3041|Chlorophyta
KEGG koko:K12736
Evalue4.34e-106
EggNOG OGsKOG0882@1|root,KOG0882@2759|Eukaryota,37I32@33090|Viridiplantae,34GUK@3041|Chlorophyta
EC5.2.1.8
DescriptionCyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
COG categoryO
BRITEko00000,ko01000,ko03041,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8859Gchil8859Gracilaria chilensis NLEC103_M9 malegenetig00000120_pilon 48552..50949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8859.t1Gchil8859.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000120_pilon 48552..50949 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8859.t1.start1Gchil8859.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000120_pilon 48552..48554 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8859.t1.CDS1Gchil8859.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000120_pilon 48552..50375 +
Gchil8859.t1.CDS2Gchil8859.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000120_pilon 50487..50544 +
Gchil8859.t1.CDS3Gchil8859.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000120_pilon 50834..50949 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8859.t1.exon1Gchil8859.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000120_pilon 48552..50375 +
Gchil8859.t1.exon2Gchil8859.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000120_pilon 50487..50544 +
Gchil8859.t1.exon3Gchil8859.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000120_pilon 50834..50949 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8859.t1.intron1Gchil8859.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000120_pilon 50376..50486 +
Gchil8859.t1.intron2Gchil8859.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000120_pilon 50545..50833 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8859.t1.stop1Gchil8859.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000120_pilon 50947..50949 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8859.t1 ID=Gchil8859.t1|Name=Gchil8859.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=666bp
MSSASSASSPSPLGPAHPPPSPTRSPTRPPPIQPPPSSVAPTTPPPSSPP
RKKPRVEHVMRTHNGGAALPAHLPNGPYYQRSYMMRYPVQCLFTSSSSIV
VASLDAALTFWARSTTPPATPSHEARRDDTNVVLDGVNNNSAKLHFVKRL
HAHKPPLLASGLSKRADALLTSSVADSTLKLFSTPTFELLHVHNLSFQAG
SVLLHIELQSAQIALVSHKNSPALSCFTLPELEFRADLTCPHAKPLTRAT
YNHAYSAIISIDEANVIDYWAVKRQGNSYHTSVDIPQLEFRSKLRTDLFY
FARNALVATSMDVSSRGSQFAVADHQGKIHIFHFLTGHLRSVIDLSLPSI
RAGLTSNAYENFGLNRRNIDNRLEAERVLKKHEQLQSQNNVVFDETGKYV
LYATVLGIHLIHVSSCTTVIIYGLNEHQYRFVNVSICAGDTIDRENGIPT
SLQPLVVASAFKSQRIFLFGASQAFRKGRDVMNEPLYTDSKLPATPSQPS
KKKVSTDQLVKRVTLHTTFGDVMLQLYGQQAPKTVENFSTHARNGYYDGV
VFHRVIRGFIVQSGDPEGNGTGGESIWGVEFEDEINPSLKHDVGILSMAN
AGPNTNGSQFFITCGPAPHLNGKHTVFGKVMKGMTVVRQIENVKVDKHDK
PFDEVRIESISVYSD*
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spliced messenger RNA

>Gchil8859.t1 ID=Gchil8859.t1|Name=Gchil8859.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1998bp|location=Sequence derived from alignment at tig00000120_pilon:48552..50949+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAGTGCATCATCTGCTTCCTCCCCTTCACCACTGGGCCCAGCTCA
TCCGCCACCCTCCCCCACGCGGTCTCCCACCCGGCCGCCTCCTATCCAGC
CGCCTCCCTCGTCGGTGGCGCCTACTACACCACCTCCTTCCTCGCCGCCC
CGAAAGAAACCCCGCGTTGAGCATGTTATGCGAACTCACAATGGCGGTGC
GGCATTGCCAGCACACCTTCCGAACGGCCCATATTATCAGCGGTCGTACA
TGATGCGTTATCCGGTCCAATGCCTGTTTACATCATCCTCATCCATTGTA
GTTGCGTCATTGGATGCCGCACTCACGTTTTGGGCGCGATCTACTACCCC
GCCTGCCACTCCTTCCCACGAAGCACGTCGTGATGACACAAATGTTGTTC
TTGATGGTGTGAATAACAACAGCGCCAAACTACATTTTGTGAAGCGCTTG
CATGCGCACAAGCCCCCTTTATTGGCCTCTGGATTATCCAAACGTGCGGA
TGCTTTGCTCACAAGCAGTGTTGCTGATAGTACTCTCAAGCTGTTTTCCA
CCCCGACCTTCGAACTACTTCACGTTCACAATTTATCGTTCCAAGCCGGT
TCCGTGTTGCTACATATCGAGTTACAATCCGCTCAAATCGCGCTTGTATC
ACACAAGAACTCCCCCGCTCTATCTTGTTTCACCCTACCCGAGTTGGAGT
TTCGAGCTGATCTCACTTGCCCACATGCAAAACCGCTAACGCGAGCTACC
TACAACCATGCTTATTCTGCAATCATATCAATCGACGAAGCGAATGTGAT
TGATTATTGGGCAGTCAAACGGCAAGGAAATTCTTATCACACGTCTGTGG
ACATTCCCCAGCTAGAGTTTCGCTCAAAGCTACGGACTGATCTTTTTTAT
TTTGCGAGGAATGCGCTTGTGGCGACCAGTATGGACGTATCATCTCGCGG
ATCTCAATTTGCTGTTGCCGATCATCAAGGCAAAATTCACATTTTCCACT
TTTTGACAGGCCATCTACGGTCTGTGATTGATCTTTCCCTCCCATCGATT
CGAGCAGGTCTCACCAGCAATGCGTACGAAAACTTTGGTTTGAATCGCAG
AAACATTGACAACAGATTGGAAGCAGAACGTGTACTTAAAAAGCATGAAC
AATTGCAATCGCAGAACAACGTTGTGTTTGATGAAACCGGGAAATATGTT
TTATATGCTACGGTTTTAGGAATTCATTTGATCCATGTATCGTCTTGCAC
CACCGTTATAATATACGGATTAAATGAACATCAGTATCGATTTGTCAACG
TTTCCATTTGCGCTGGAGATACTATTGACCGTGAGAATGGTATCCCCACT
TCGTTGCAACCCCTCGTTGTCGCATCAGCGTTTAAAAGCCAACGAATCTT
CCTGTTCGGAGCCTCCCAAGCATTCCGAAAGGGTAGAGATGTGATGAACG
AACCGCTTTACACAGATTCGAAGCTACCGGCAACTCCTTCCCAGCCTTCC
AAAAAGAAAGTGTCTACCGACCAACTTGTAAAACGAGTCACGCTGCACAC
CACTTTTGGAGACGTTATGTTGCAACTGTATGGACAACAGGCGCCCAAGA
CTGTGGAAAACTTTTCCACGCATGCGCGAAATGGTTACTACGATGGCGTG
GTATTTCATCGTGTGATTCGAGGATTTATTGTACAAAGTGGTGATCCGGA
AGGCAACGGAACAGGTGGCGAGTCTATCTGGGGCGTGGAATTTGAAGACG
AGATCAATCCTTCTCTCAAGCATGACGTAGGGATTTTGTCTATGGCCAAT
GCAGGACCCAACACAAACGGATCGCAATTCTTTATCACATGTGGGCCTGC
CCCTCATTTGAATGGTAAACACACCGTCTTTGGTAAAGTTATGAAAGGAA
TGACAGTGGTGAGACAGATTGAAAATGTGAAGGTAGACAAACATGATAAA
CCCTTCGACGAGGTTCGAATTGAAAGCATATCGGTGTATTCGGACTGA
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protein sequence of Gchil8859.t1

>Gchil8859.t1 ID=Gchil8859.t1|Name=Gchil8859.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=666bp
MSSASSASSPSPLGPAHPPPSPTRSPTRPPPIQPPPSSVAPTTPPPSSPP
RKKPRVEHVMRTHNGGAALPAHLPNGPYYQRSYMMRYPVQCLFTSSSSIV
VASLDAALTFWARSTTPPATPSHEARRDDTNVVLDGVNNNSAKLHFVKRL
HAHKPPLLASGLSKRADALLTSSVADSTLKLFSTPTFELLHVHNLSFQAG
SVLLHIELQSAQIALVSHKNSPALSCFTLPELEFRADLTCPHAKPLTRAT
YNHAYSAIISIDEANVIDYWAVKRQGNSYHTSVDIPQLEFRSKLRTDLFY
FARNALVATSMDVSSRGSQFAVADHQGKIHIFHFLTGHLRSVIDLSLPSI
RAGLTSNAYENFGLNRRNIDNRLEAERVLKKHEQLQSQNNVVFDETGKYV
LYATVLGIHLIHVSSCTTVIIYGLNEHQYRFVNVSICAGDTIDRENGIPT
SLQPLVVASAFKSQRIFLFGASQAFRKGRDVMNEPLYTDSKLPATPSQPS
KKKVSTDQLVKRVTLHTTFGDVMLQLYGQQAPKTVENFSTHARNGYYDGV
VFHRVIRGFIVQSGDPEGNGTGGESIWGVEFEDEINPSLKHDVGILSMAN
AGPNTNGSQFFITCGPAPHLNGKHTVFGKVMKGMTVVRQIENVKVDKHDK
PFDEVRIESISVYSD*
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mRNA from alignment at tig00000120_pilon:48552..50949+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8859.t1 ID=Gchil8859.t1|Name=Gchil8859.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2398bp|location=Sequence derived from alignment at tig00000120_pilon:48552..50949+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAAGTGCATCATCTGCTTCCTCCCCTTCACCACTGGGCCCAGCTCA
TCCGCCACCCTCCCCCACGCGGTCTCCCACCCGGCCGCCTCCTATCCAGC
CGCCTCCCTCGTCGGTGGCGCCTACTACACCACCTCCTTCCTCGCCGCCC
CGAAAGAAACCCCGCGTTGAGCATGTTATGCGAACTCACAATGGCGGTGC
GGCATTGCCAGCACACCTTCCGAACGGCCCATATTATCAGCGGTCGTACA
TGATGCGTTATCCGGTCCAATGCCTGTTTACATCATCCTCATCCATTGTA
GTTGCGTCATTGGATGCCGCACTCACGTTTTGGGCGCGATCTACTACCCC
GCCTGCCACTCCTTCCCACGAAGCACGTCGTGATGACACAAATGTTGTTC
TTGATGGTGTGAATAACAACAGCGCCAAACTACATTTTGTGAAGCGCTTG
CATGCGCACAAGCCCCCTTTATTGGCCTCTGGATTATCCAAACGTGCGGA
TGCTTTGCTCACAAGCAGTGTTGCTGATAGTACTCTCAAGCTGTTTTCCA
CCCCGACCTTCGAACTACTTCACGTTCACAATTTATCGTTCCAAGCCGGT
TCCGTGTTGCTACATATCGAGTTACAATCCGCTCAAATCGCGCTTGTATC
ACACAAGAACTCCCCCGCTCTATCTTGTTTCACCCTACCCGAGTTGGAGT
TTCGAGCTGATCTCACTTGCCCACATGCAAAACCGCTAACGCGAGCTACC
TACAACCATGCTTATTCTGCAATCATATCAATCGACGAAGCGAATGTGAT
TGATTATTGGGCAGTCAAACGGCAAGGAAATTCTTATCACACGTCTGTGG
ACATTCCCCAGCTAGAGTTTCGCTCAAAGCTACGGACTGATCTTTTTTAT
TTTGCGAGGAATGCGCTTGTGGCGACCAGTATGGACGTATCATCTCGCGG
ATCTCAATTTGCTGTTGCCGATCATCAAGGCAAAATTCACATTTTCCACT
TTTTGACAGGCCATCTACGGTCTGTGATTGATCTTTCCCTCCCATCGATT
CGAGCAGGTCTCACCAGCAATGCGTACGAAAACTTTGGTTTGAATCGCAG
AAACATTGACAACAGATTGGAAGCAGAACGTGTACTTAAAAAGCATGAAC
AATTGCAATCGCAGAACAACGTTGTGTTTGATGAAACCGGGAAATATGTT
TTATATGCTACGGTTTTAGGAATTCATTTGATCCATGTATCGTCTTGCAC
CACCGTTATAATATACGGATTAAATGAACATCAGTATCGATTTGTCAACG
TTTCCATTTGCGCTGGAGATACTATTGACCGTGAGAATGGTATCCCCACT
TCGTTGCAACCCCTCGTTGTCGCATCAGCGTTTAAAAGCCAACGAATCTT
CCTGTTCGGAGCCTCCCAAGCATTCCGAAAGGGTAGAGATGTGATGAACG
AACCGCTTTACACAGATTCGAAGCTACCGGCAACTCCTTCCCAGCCTTCC
AAAAAGAAAGTGTCTACCGACCAACTTGTAAAACGAGTCACGCTGCACAC
CACTTTTGGAGACGTTATGTTGCAACTGTATGGACAACAGGCGCCCAAGA
CTGTGGAAAACTTTTCCACGCATGCGCGAAATGGTTACTACGATGGCGTG
GTATTTCATCGTGTGATTCGAGGATTTATTGTACAAAGTGGTGATCCGGA
AGGCAACGGAACAGGTGGCGAGTCTATCTGGGGCGTGGAATTTGAAGACG
AGATCAATCCTTCTCTCAAGCATGACGTAGGGATTTTGTCTATGGCCAAT
GCAGGACCCAACACAAACGGATCGGTAAGCTTTCCATTCTGCCTGATTCG
GAACTGTTGCACATGCAGTGATTGTTGCCCCATCGTTGCTGACTCTAATG
ATTTTCTATCTAACTGATGCGTCCCGTCTCGACAGCAATTCTTTATCACA
TGTGGGCCTGCCCCTCATTTGAATGGTAAACACACCGTCTTTGGTACGTC
AAAACTATCTAATGTCTGTCACGTTGGACAGTGCTGACCTCCTTAACGGG
AAGAAAGAAGATAAGGAATTGACGCGTTTCTTTTATGGAGCACAGCTTAA
TCAGACACCTAGAACATCCTGACACTGAAGCATATCGCAACTCGCTATCA
TGACACTAACCAATCCTTTCGGTGTTACTCTGCCTCGGCGTCGTCTTTAT
CGTTCCAACATTCGGAAAATGCTCCAAAATATATTACACTAACTTTCTAC
GCCCAAATCTAACATTTCGTCTCTGATTCCAGGTAAAGTTATGAAAGGAA
TGACAGTGGTGAGACAGATTGAAAATGTGAAGGTAGACAAACATGATAAA
CCCTTCGACGAGGTTCGAATTGAAAGCATATCGGTGTATTCGGACTGA
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Coding sequence (CDS) from alignment at tig00000120_pilon:48552..50949+

>Gchil8859.t1 ID=Gchil8859.t1|Name=Gchil8859.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1998bp|location=Sequence derived from alignment at tig00000120_pilon:48552..50949+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAAGTGCATCATCTGCTTCCTCCCCTTCACCACTGGGCCCAGCTCA
TCCGCCACCCTCCCCCACGCGGTCTCCCACCCGGCCGCCTCCTATCCAGC
CGCCTCCCTCGTCGGTGGCGCCTACTACACCACCTCCTTCCTCGCCGCCC
CGAAAGAAACCCCGCGTTGAGCATGTTATGCGAACTCACAATGGCGGTGC
GGCATTGCCAGCACACCTTCCGAACGGCCCATATTATCAGCGGTCGTACA
TGATGCGTTATCCGGTCCAATGCCTGTTTACATCATCCTCATCCATTGTA
GTTGCGTCATTGGATGCCGCACTCACGTTTTGGGCGCGATCTACTACCCC
GCCTGCCACTCCTTCCCACGAAGCACGTCGTGATGACACAAATGTTGTTC
TTGATGGTGTGAATAACAACAGCGCCAAACTACATTTTGTGAAGCGCTTG
CATGCGCACAAGCCCCCTTTATTGGCCTCTGGATTATCCAAACGTGCGGA
TGCTTTGCTCACAAGCAGTGTTGCTGATAGTACTCTCAAGCTGTTTTCCA
CCCCGACCTTCGAACTACTTCACGTTCACAATTTATCGTTCCAAGCCGGT
TCCGTGTTGCTACATATCGAGTTACAATCCGCTCAAATCGCGCTTGTATC
ACACAAGAACTCCCCCGCTCTATCTTGTTTCACCCTACCCGAGTTGGAGT
TTCGAGCTGATCTCACTTGCCCACATGCAAAACCGCTAACGCGAGCTACC
TACAACCATGCTTATTCTGCAATCATATCAATCGACGAAGCGAATGTGAT
TGATTATTGGGCAGTCAAACGGCAAGGAAATTCTTATCACACGTCTGTGG
ACATTCCCCAGCTAGAGTTTCGCTCAAAGCTACGGACTGATCTTTTTTAT
TTTGCGAGGAATGCGCTTGTGGCGACCAGTATGGACGTATCATCTCGCGG
ATCTCAATTTGCTGTTGCCGATCATCAAGGCAAAATTCACATTTTCCACT
TTTTGACAGGCCATCTACGGTCTGTGATTGATCTTTCCCTCCCATCGATT
CGAGCAGGTCTCACCAGCAATGCGTACGAAAACTTTGGTTTGAATCGCAG
AAACATTGACAACAGATTGGAAGCAGAACGTGTACTTAAAAAGCATGAAC
AATTGCAATCGCAGAACAACGTTGTGTTTGATGAAACCGGGAAATATGTT
TTATATGCTACGGTTTTAGGAATTCATTTGATCCATGTATCGTCTTGCAC
CACCGTTATAATATACGGATTAAATGAACATCAGTATCGATTTGTCAACG
TTTCCATTTGCGCTGGAGATACTATTGACCGTGAGAATGGTATCCCCACT
TCGTTGCAACCCCTCGTTGTCGCATCAGCGTTTAAAAGCCAACGAATCTT
CCTGTTCGGAGCCTCCCAAGCATTCCGAAAGGGTAGAGATGTGATGAACG
AACCGCTTTACACAGATTCGAAGCTACCGGCAACTCCTTCCCAGCCTTCC
AAAAAGAAAGTGTCTACCGACCAACTTGTAAAACGAGTCACGCTGCACAC
CACTTTTGGAGACGTTATGTTGCAACTGTATGGACAACAGGCGCCCAAGA
CTGTGGAAAACTTTTCCACGCATGCGCGAAATGGTTACTACGATGGCGTG
GTATTTCATCGTGTGATTCGAGGATTTATTGTACAAAGTGGTGATCCGGA
AGGCAACGGAACAGGTGGCGAGTCTATCTGGGGCGTGGAATTTGAAGACG
AGATCAATCCTTCTCTCAAGCATGACGTAGGGATTTTGTCTATGGCCAAT
GCAGGACCCAACACAAACGGATCGCAATTCTTTATCACATGTGGGCCTGC
CCCTCATTTGAATGGTAAACACACCGTCTTTGGTAAAGTTATGAAAGGAA
TGACAGTGGTGAGACAGATTGAAAATGTGAAGGTAGACAAACATGATAAA
CCCTTCGACGAGGTTCGAATTGAAAGCATATCGGTGTATTCGGACTGA
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