Gchil3040.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil3040.t1
Unique NameGchil3040.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length145
Homology
BLAST of Gchil3040.t1 vs. uniprot
Match: A0A2V3IR07_9FLOR (SsrA-binding protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IR07_9FLOR)

HSP 1 Score: 212 bits (540), Expect = 7.870e-68
Identity = 103/144 (71.53%), Postives = 124/144 (86.11%), Query Frame = 0
Query:    1 MARSRYQFLEKHECGLELLGTEVKSIRMGQVNLRDSYAIIRQGQLYLKNLRISHYPFATAKFNHEPLREKKVLLHKPKIRKLASTVAEKGLTLIPTRLYFINGFVKVEIALAKGKQERDRREDIKKREDQREMRRIEKVVIRGM 144
            +ARSRY FLE HECG++LLGTEVKS+R+GQVNLRDSYAI+R  QLY++N+ IS Y FA+ KFNH+P REKK+LLHK  IRKL + VAEKGLTL+PTRLYF NG+ K+EIALAKGK  RDRREDIKKR+D R MR++EK+ +RGM
Sbjct:   51 IARSRYDFLETHECGMQLLGTEVKSVRLGQVNLRDSYAIVRNAQLYVRNMHISPYSFASEKFNHQPRREKKLLLHKKAIRKLGALVAEKGLTLVPTRLYFANGYAKIEIALAKGKNVRDRREDIKKRDDDRYMRQVEKIAVRGM 194          
BLAST of Gchil3040.t1 vs. uniprot
Match: UPI001680BADB (SsrA-binding protein SmpB n=1 Tax=Leptolyngbya sp. FACHB-36 TaxID=2692808 RepID=UPI001680BADB)

HSP 1 Score: 152 bits (384), Expect = 1.170e-44
Identity = 76/134 (56.72%), Postives = 103/134 (76.87%), Query Frame = 0
Query:    2 ARSRYQFLEKHECGLELLGTEVKSIRMGQVNLRDSYAIIRQGQLYLKNLRISHYPFATAKFNHEPLREKKVLLHKPKIRKLASTVAEKGLTLIPTRLYFINGFVKVEIALAKGKQERDRREDIKKREDQREMRR 135
            AR  Y+ LE HE G+ELLGTEVKSIR G+VNLRD +A+IR G+  L N++IS +   +  FNH+P R +++LLHK +IRKL     EKGLTL+P ++YF NG+VKV+IAL +GK+  D+RED +KR+DQR+M+R
Sbjct:   17 ARYLYEILETHEAGIELLGTEVKSIRAGKVNLRDGFALIRNGEALLLNVQISPHEATSQAFNHDPRRTRRLLLHKDEIRKLTGQTQEKGLTLVPLKMYFKNGWVKVDIALVRGKKLHDKREDDRKRQDQRDMQR 150          
BLAST of Gchil3040.t1 vs. uniprot
Match: A0A6M0C0I4_9CYAN (SsrA-binding protein n=1 Tax=Okeania sp. SIO2H7 TaxID=2607802 RepID=A0A6M0C0I4_9CYAN)

HSP 1 Score: 152 bits (384), Expect = 1.210e-44
Identity = 81/137 (59.12%), Postives = 103/137 (75.18%), Query Frame = 0
Query:    2 ARSRYQFLEKHECGLELLGTEVKSIRMGQVNLRDSYAIIRQGQLYLKNLRISHYPFATAKFNHEPLREKKVLLHKPKIRKLASTVAEKGLTLIPTRLYFINGFVKVEIALAKGKQERDRREDIKKREDQREMRRIEK 138
            AR +Y  LE +E G+EL GTEVKSIR G+ N+RDSYA+IR  + +L NL IS Y  A+  FNH+P R +++LLHK +IRKL   V ++GLTL+P +LYF  G VKVEIALAKGK+  D+REDIKKRED+R M+R  K
Sbjct:   18 ARYQYHILETYEAGIELKGTEVKSIRAGRCNVRDSYALIRNDEAWLLNLHISPYQGASEYFNHDPRRTRRLLLHKQEIRKLIGKVEQQGLTLVPLKLYFKQGRVKVEIALAKGKKLHDKREDIKKREDKRSMQRAMK 154          
BLAST of Gchil3040.t1 vs. uniprot
Match: SSRP_THEVB (SsrA-binding protein n=7 Tax=Cyanobacteria TaxID=1117 RepID=SSRP_THEVB)

HSP 1 Score: 151 bits (381), Expect = 3.050e-44
Identity = 76/137 (55.47%), Postives = 103/137 (75.18%), Query Frame = 0
Query:    2 ARSRYQFLEKHECGLELLGTEVKSIRMGQVNLRDSYAIIRQGQLYLKNLRISHYPFATAKFNHEPLREKKVLLHKPKIRKLASTVAEKGLTLIPTRLYFINGFVKVEIALAKGKQERDRREDIKKREDQREMRRIEK 138
            AR +Y+ LE +ECGL LLGTEVKSIR G+VNLRD +A IR G+ +L N+ IS +      +NH+PLR++K+LLHK +IRKL   V +KGLTL+P +LY  NG VKV + LA+GK+  D+R+D+K+R+D+REM R  K
Sbjct:   14 ARFQYEILETYECGLVLLGTEVKSIRAGKVNLRDGFARIRNGEAWLMNVHISPHESTNPSYNHDPLRDRKLLLHKQEIRKLVGKVEQKGLTLVPLKLYLKNGRVKVSLGLARGKKLHDKRQDLKQRQDKREMERAMK 150          
BLAST of Gchil3040.t1 vs. uniprot
Match: UPI00034669C3 (SsrA-binding protein SmpB n=1 Tax=Pseudanabaena sp. PCC 6802 TaxID=118173 RepID=UPI00034669C3)

HSP 1 Score: 151 bits (381), Expect = 3.050e-44
Identity = 75/138 (54.35%), Postives = 105/138 (76.09%), Query Frame = 0
Query:    2 ARSRYQFLEKHECGLELLGTEVKSIRMGQVNLRDSYAIIRQGQLYLKNLRISHYPFATAKFNHEPLREKKVLLHKPKIRKLASTVAEKGLTLIPTRLYFINGFVKVEIALAKGKQERDRREDIKKREDQREMRRIEKV 139
            AR  Y+ LE +E G+ELLGTEVKSI+ GQ NLRD++A+IR GQ+ L N+ ++ +   +A FNHEP R +++L+HK +IRKL   V +KGLTL+P +LY  NG+VKV++AL + K+  D+REDIKKRED+R+M R  K+
Sbjct:   14 ARFNYEILETYEAGIELLGTEVKSIKTGQANLRDAFALIRNGQVLLLNMYVAPHKTTSAFFNHEPTRTRRLLMHKQEIRKLTGKVQQKGLTLVPLKLYLKNGWVKVDVALVRNKKLYDKREDIKKREDKRDMERATKM 151          
BLAST of Gchil3040.t1 vs. uniprot
Match: A0A6H1U2N6_9CYAN (SsrA-binding protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A6H1U2N6_9CYAN)

HSP 1 Score: 149 bits (376), Expect = 1.920e-43
Identity = 76/134 (56.72%), Postives = 100/134 (74.63%), Query Frame = 0
Query:    3 RSRYQFLEKHECGLELLGTEVKSIRMGQVNLRDSYAIIRQGQLYLKNLRISHYPFATAKFNHEPLREKKVLLHKPKIRKLASTVAEKGLTLIPTRLYFINGFVKVEIALAKGKQERDRREDIKKREDQREMRRI 136
            R +Y+ L+ +E G+EL GTEVKSIR G+VNLRD YA+IR G+++L N+ IS Y  A+  FNHEP R +K+LLH  +IRKL   V +KGLTL+PTR+Y   G VKV +ALAKGKQ  D+RE +KKR+  RE+ R+
Sbjct:   18 RHQYEILDTYEAGIELKGTEVKSIRQGKVNLRDGYALIRNGEVWLHNVHISPYQTASEFFNHEPRRTRKLLLHGYEIRKLIGKVEQKGLTLVPTRMYLKRGLVKVGLALAKGKQLHDKRETLKKRQQNREIERV 151          
BLAST of Gchil3040.t1 vs. uniprot
Match: A0A2T1E349_9CYAN (SsrA-binding protein n=2 Tax=Cyanobacteria/Melainabacteria group TaxID=1798711 RepID=A0A2T1E349_9CYAN)

HSP 1 Score: 149 bits (376), Expect = 1.920e-43
Identity = 75/137 (54.74%), Postives = 104/137 (75.91%), Query Frame = 0
Query:    2 ARSRYQFLEKHECGLELLGTEVKSIRMGQVNLRDSYAIIRQGQLYLKNLRISHYPFATAKFNHEPLREKKVLLHKPKIRKLASTVAEKGLTLIPTRLYFINGFVKVEIALAKGKQERDRREDIKKREDQREMRRIEK 138
            AR  Y+ LE +E G+EL+GTEVKSIR G+VNLRD +A+IR G++ L N++IS +   +  FNHEP R +K+LLH+ +IRKL   V ++GLTL+P ++Y   G+VKV++AL +GK+  D+REDIKKREDQR M+R  K
Sbjct:   17 ARYLYEILETYEAGIELMGTEVKSIRAGKVNLRDGFALIRNGEVMLLNVQISPHQTTSQTFNHEPTRTRKLLLHREEIRKLIGKVEQQGLTLVPLKMYMKRGWVKVDLALVRGKKLHDKREDIKKREDQRSMQRAMK 153          
BLAST of Gchil3040.t1 vs. uniprot
Match: A0A0C2LGS9_9CYAN (SsrA-binding protein n=6 Tax=Nostocales TaxID=1161 RepID=A0A0C2LGS9_9CYAN)

HSP 1 Score: 149 bits (375), Expect = 2.720e-43
Identity = 77/137 (56.20%), Postives = 102/137 (74.45%), Query Frame = 0
Query:    2 ARSRYQFLEKHECGLELLGTEVKSIRMGQVNLRDSYAIIRQGQLYLKNLRISHYPFATAKFNHEPLREKKVLLHKPKIRKLASTVAEKGLTLIPTRLYFINGFVKVEIALAKGKQERDRREDIKKREDQREMRRIEK 138
            AR  Y+ LE +E G+EL GTEVKSIR G+VNL+D YA+IR GQ +L N  IS Y  +   FNHEP R +K+LLH+ +IRKL   V ++GLTLIP ++Y   G+VK+ IALA+GK+  D+REDIK+R+DQR+M+R  K
Sbjct:   17 ARYLYEILETYEAGIELTGTEVKSIRAGKVNLQDGYALIRDGQAWLLNAHISPYNASGQYFNHEPRRTRKLLLHREEIRKLIGKVEQQGLTLIPLKMYLKRGWVKISIALARGKKVHDKREDIKRRQDQRDMQRAMK 153          
BLAST of Gchil3040.t1 vs. uniprot
Match: A0A6M0F0H0_9CYAN (SsrA-binding protein n=5 Tax=Cyanobacteria TaxID=1117 RepID=A0A6M0F0H0_9CYAN)

HSP 1 Score: 149 bits (375), Expect = 2.720e-43
Identity = 78/137 (56.93%), Postives = 102/137 (74.45%), Query Frame = 0
Query:    2 ARSRYQFLEKHECGLELLGTEVKSIRMGQVNLRDSYAIIRQGQLYLKNLRISHYPFATAKFNHEPLREKKVLLHKPKIRKLASTVAEKGLTLIPTRLYFINGFVKVEIALAKGKQERDRREDIKKREDQREMRRIEK 138
            AR RY+ LE +E G+EL GTEVKSIR G+VNLRD YA+IR G+ +L N+ IS Y  +   FNH+P R +++LLHK +IRKL   V ++GLTL+P ++Y   GFVKV IALAKGK+  D+RE IK+R+D+REM R  K
Sbjct:   17 ARFRYEILETYEAGVELKGTEVKSIRQGKVNLRDGYALIRNGEAWLLNVHISPYESSGNFFNHDPRRTRRLLLHKKEIRKLIGKVEQEGLTLVPLKMYMKRGFVKVAIALAKGKKIHDKRETIKQRQDKREMARAMK 153          
BLAST of Gchil3040.t1 vs. uniprot
Match: UPI000C809339 (SsrA-binding protein SmpB n=1 Tax=Fischerella thermalis TaxID=372787 RepID=UPI000C809339)

HSP 1 Score: 149 bits (375), Expect = 2.720e-43
Identity = 76/134 (56.72%), Postives = 101/134 (75.37%), Query Frame = 0
Query:    2 ARSRYQFLEKHECGLELLGTEVKSIRMGQVNLRDSYAIIRQGQLYLKNLRISHYPFATAKFNHEPLREKKVLLHKPKIRKLASTVAEKGLTLIPTRLYFINGFVKVEIALAKGKQERDRREDIKKREDQREMRR 135
            AR  Y+ LE +E G++L GTEVKSIR G+VNL+D YA+IR G+ +L N+ IS Y  +   FNHEP R +K+LLH+ +IRKL   V ++GLTL+P ++Y   G+VKV IAL KGK+  D+REDIKKR+DQREM+R
Sbjct:   17 ARYLYEILETYEAGIQLTGTEVKSIRAGRVNLQDGYALIRNGEAWLINVHISPYTASGQYFNHEPRRTRKLLLHRQEIRKLVGKVEQQGLTLVPLKMYLKRGWVKVSIALVKGKKLHDKREDIKKRQDQREMQR 150          
The following BLAST results are available for this feature:
BLAST of Gchil3040.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IR07_9FLOR7.870e-6871.53SsrA-binding protein n=1 Tax=Gracilariopsis chorda... [more]
UPI001680BADB1.170e-4456.72SsrA-binding protein SmpB n=1 Tax=Leptolyngbya sp.... [more]
A0A6M0C0I4_9CYAN1.210e-4459.12SsrA-binding protein n=1 Tax=Okeania sp. SIO2H7 Ta... [more]
SSRP_THEVB3.050e-4455.47SsrA-binding protein n=7 Tax=Cyanobacteria TaxID=1... [more]
UPI00034669C33.050e-4454.35SsrA-binding protein SmpB n=1 Tax=Pseudanabaena sp... [more]
A0A6H1U2N6_9CYAN1.920e-4356.72SsrA-binding protein n=2 Tax=Cyanobacteria TaxID=1... [more]
A0A2T1E349_9CYAN1.920e-4354.74SsrA-binding protein n=2 Tax=Cyanobacteria/Melaina... [more]
A0A0C2LGS9_9CYAN2.720e-4356.20SsrA-binding protein n=6 Tax=Nostocales TaxID=1161... [more]
A0A6M0F0H0_9CYAN2.720e-4356.93SsrA-binding protein n=5 Tax=Cyanobacteria TaxID=1... [more]
UPI000C8093392.720e-4356.72SsrA-binding protein SmpB n=1 Tax=Fischerella ther... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000037SsrA-binding proteinTIGRFAMTIGR00086TIGR00086coord: 2..136
e-value: 8.7E-47
score: 156.8
IPR000037SsrA-binding proteinPFAMPF01668SmpBcoord: 2..137
e-value: 3.0E-50
score: 169.9
IPR000037SsrA-binding proteinPANTHERPTHR30308TMRNA-BINDING COMPONENT OF TRANS-TRANSLATION TAGGING COMPLEXcoord: 2..137
IPR000037SsrA-binding proteinHAMAPMF_00023SmpBcoord: 1..143
score: 56.821083
IPR000037SsrA-binding proteinCDDcd09294SmpBcoord: 2..115
e-value: 6.10401E-54
score: 163.675
IPR023620Small protein BGENE3D2.40.280.10coord: 1..116
e-value: 2.7E-40
score: 139.2
IPR023620Small protein BSUPERFAMILY74982Small protein B (SmpB)coord: 2..120
IPR020081SsrA-binding protein, conserved sitePROSITEPS01317SSRPcoord: 14..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1314031..1314465 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3040.t1Gchil3040.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000106_pilon 1314031..1314465 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil3040.t1 ID=Gchil3040.t1|Name=Gchil3040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=145bp
MARSRYQFLEKHECGLELLGTEVKSIRMGQVNLRDSYAIIRQGQLYLKNL
RISHYPFATAKFNHEPLREKKVLLHKPKIRKLASTVAEKGLTLIPTRLYF
INGFVKVEIALAKGKQERDRREDIKKREDQREMRRIEKVVIRGM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000037SsrA-bd_prot
IPR023620SmpB
IPR020081SsrA-bd_prot_CS