Gchil3040.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3040.t1
Unique NameGchil3040.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length145
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1314031..1314465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog118173.KB235914_gene1732
Preferred namesmpB
PFAMsSmpB
Max annot lvl1117|Cyanobacteria
KEGG koko:K03664
Evalue8.71e-44
EggNOG OGsCOG0691@1|root,COG0691@2|Bacteria,1G542@1117|Cyanobacteria,1HAV9@1150|Oscillatoriales
Descriptionthe 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA
COG categoryO
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3040Gchil3040Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1314031..1314465 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3040.t1.stop1Gchil3040.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1314031..1314033 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3040.t1.CDS1Gchil3040.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1314031..1314465 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3040.t1.exon1Gchil3040.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1314031..1314465 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3040.t1.start1Gchil3040.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1314463..1314465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3040.t1Gchil3040.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1314031..1314465 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3040.t1 ID=Gchil3040.t1|Name=Gchil3040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=145bp
MARSRYQFLEKHECGLELLGTEVKSIRMGQVNLRDSYAIIRQGQLYLKNL
RISHYPFATAKFNHEPLREKKVLLHKPKIRKLASTVAEKGLTLIPTRLYF
INGFVKVEIALAKGKQERDRREDIKKREDQREMRRIEKVVIRGM*
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spliced messenger RNA

>Gchil3040.t1 ID=Gchil3040.t1|Name=Gchil3040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=435bp|location=Sequence derived from alignment at tig00000106_pilon:1314031..1314465- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACGGTCCAGATACCAGTTCCTTGAGAAGCACGAATGTGGACTAGA
GCTGTTGGGAACAGAAGTCAAATCCATTCGAATGGGACAGGTAAATCTTC
GAGACAGCTACGCCATAATTCGCCAAGGCCAGTTGTACCTAAAGAATCTA
CGCATATCCCATTATCCGTTTGCAACCGCAAAGTTCAATCATGAACCGCT
GCGCGAGAAAAAAGTGCTTTTGCACAAACCTAAAATTCGAAAACTAGCCA
GCACCGTTGCTGAGAAAGGCCTTACTTTGATCCCAACTCGATTATACTTT
ATTAATGGTTTTGTCAAGGTTGAAATCGCACTAGCAAAAGGTAAGCAGGA
AAGAGATCGTCGCGAAGACATCAAAAAGAGGGAAGACCAGCGTGAAATGA
GGCGCATCGAGAAGGTTGTCATTCGAGGCATGTAA
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protein sequence of Gchil3040.t1

>Gchil3040.t1 ID=Gchil3040.t1|Name=Gchil3040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=145bp
MARSRYQFLEKHECGLELLGTEVKSIRMGQVNLRDSYAIIRQGQLYLKNL
RISHYPFATAKFNHEPLREKKVLLHKPKIRKLASTVAEKGLTLIPTRLYF
INGFVKVEIALAKGKQERDRREDIKKREDQREMRRIEKVVIRGM*
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mRNA from alignment at tig00000106_pilon:1314031..1314465-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3040.t1 ID=Gchil3040.t1|Name=Gchil3040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=435bp|location=Sequence derived from alignment at tig00000106_pilon:1314031..1314465- (Gracilaria chilensis NLEC103_M9 male)
ATGGCACGGTCCAGATACCAGTTCCTTGAGAAGCACGAATGTGGACTAGA
GCTGTTGGGAACAGAAGTCAAATCCATTCGAATGGGACAGGTAAATCTTC
GAGACAGCTACGCCATAATTCGCCAAGGCCAGTTGTACCTAAAGAATCTA
CGCATATCCCATTATCCGTTTGCAACCGCAAAGTTCAATCATGAACCGCT
GCGCGAGAAAAAAGTGCTTTTGCACAAACCTAAAATTCGAAAACTAGCCA
GCACCGTTGCTGAGAAAGGCCTTACTTTGATCCCAACTCGATTATACTTT
ATTAATGGTTTTGTCAAGGTTGAAATCGCACTAGCAAAAGGTAAGCAGGA
AAGAGATCGTCGCGAAGACATCAAAAAGAGGGAAGACCAGCGTGAAATGA
GGCGCATCGAGAAGGTTGTCATTCGAGGCATGTAA
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Coding sequence (CDS) from alignment at tig00000106_pilon:1314031..1314465-

>Gchil3040.t1 ID=Gchil3040.t1|Name=Gchil3040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=435bp|location=Sequence derived from alignment at tig00000106_pilon:1314031..1314465- (Gracilaria chilensis NLEC103_M9 male)
ATGGCACGGTCCAGATACCAGTTCCTTGAGAAGCACGAATGTGGACTAGA
GCTGTTGGGAACAGAAGTCAAATCCATTCGAATGGGACAGGTAAATCTTC
GAGACAGCTACGCCATAATTCGCCAAGGCCAGTTGTACCTAAAGAATCTA
CGCATATCCCATTATCCGTTTGCAACCGCAAAGTTCAATCATGAACCGCT
GCGCGAGAAAAAAGTGCTTTTGCACAAACCTAAAATTCGAAAACTAGCCA
GCACCGTTGCTGAGAAAGGCCTTACTTTGATCCCAACTCGATTATACTTT
ATTAATGGTTTTGTCAAGGTTGAAATCGCACTAGCAAAAGGTAAGCAGGA
AAGAGATCGTCGCGAAGACATCAAAAAGAGGGAAGACCAGCGTGAAATGA
GGCGCATCGAGAAGGTTGTCATTCGAGGCATGTAA
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