Gchil7496.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7496.t1
Unique NameGchil7496.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length1306
Homology
BLAST of Gchil7496.t1 vs. uniprot
Match: A0A2V3J236_9FLOR (Coilin n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J236_9FLOR)

HSP 1 Score: 148 bits (373), Expect = 3.720e-32
Identity = 355/1434 (24.76%), Postives = 580/1434 (40.45%), Query Frame = 0
Query:   13 DGGFPQPPRRVRVKTQLLPKTWLVIPSFANTVAQLVCYLRTRLSLPKDVEYDFYLEGSVILPDETIDILRDGDHIQVYPSGQAPPSG--SHETNPTSSF-------TRIFNASPMRPP--LTPSQQLSSA--------AETSKEPSNISPRPASTTTNHTPSPNQALSISRRKRSAEGRRXXXXXXXXXXXXXXQEAREAKALEIIPNSTSSPCIGSEQQATIITLKPREPRRQSQADTMDICRSEMKIPLPYGPAIFAKRPHRNDASREPAERSSAANSRERMSQVQANSRKTNNIRDNSWDDRAEKRTEKSSSP------DIIEIVVKKNT---RTSSGARTDRALSRPHT---LRQQSTEARRPENSPIENENSRVGLNQPNRRGMASSKVRLRQAVSRTSTPFSTDDASTAKSPGLAVVNDILETVMNPS-NGQKLFTKENPCRKNNTQAVAPASHILLPDGSIALAQGGRGTESIHERENPNNSNGL----------------------------------LPKV-----GFSNASTEHLPSTFSLSIALSEIQHAKELNPVVNEKQN-LSQDLGAEIDDILKVLDSENMGNSSPTAVANTISEESNTDK--TASKPKDDMLYQQTRAEGGEGHQTMPISEFCANSQLAPVEAIEYPRSSEMRAVKELNPLLNEKEYLVEEPGESARSEGIFSKPVQKKVLIANDVIPAPNTGRDQEACAFDSAMVIHCGLQAAREPKQGKAKRR--RVDSDYTFSEKAVIRSARSSVQSSKFNEGRPIGGTENQRQGRDAEEVENPRGTEIKSRFLEEILDLGKALDLNLPETDRITLDEQDKAPAIPQDNMEDVSEKKVGLKHGIEQEPAQ----RNAKMNDTQKKDALQTNVSDETEKIRDARHASRTQEDNEILDEFKRTAVSDILKGTMLGAAQ-------PCEEERGGAEDMESANAVEKALDSAGNHLSGCKTGHGMTAKNKRRGALSVSAALRFAREQNMLQGGHKVKRKAS---EPNVHVQEPLCLSPKAKKRXXXXXXXSQTSKAIHMIDEEQYNESVLVGFEADSGKHDKEAQQSENA--EFALPPPSWCVIAVGKRDPSLFAS--------TPAVEQANEYGGKQTNARK------KEAQVNAFTHFERTETFGDNGNSGSSSAAVLKEDNTRDTDQIAAIGTKEKFSKASLVFPSVGGNEDESILHEAEGKYRN--HNKPIANCERLGQCPGVELRSPARAYVPSFMPDVEPGDEMLSQDDNPRPDLEGKRSKIRLRNTRD-LPRKCDFGKEKRELSGEDS-SGENECG-----DGPESVVPTTFQEKKITSRYEAQ--------------------------GISSEKEKKFPCAPAGERVPGGFKMKSKFLDGVVSLMIDTTVELEYVCAELSNVKSKNR-DNC 1304
            D   PQPP+R++VKT  LP+ WLVIP+F NTVAQL CY+RTRLSL +D +YD YL+GS+ILP+ETI+++RDGD I VYP GQ PP+   SH+TNP S         T      P RPP    P Q L S            S+ P   + R  ST+ +    P + LS   +KR    R XXXXXXXXXXXXXX   R +   E  P++  S  + S+  +T   +  R   ++S ++T        ++   +   I       N+ S      SS+   + + S + A      + +D     + EK ++K S+       D    +++++T   R SS   T+R  SRP     LR+ +T    PE   + +++   G        +  S V+  +++        ++  +  K+     ++ I E+    +   Q L + +N   + +  +    S+         +A+G +   S   R   +++  L                                   PKV       S+ +   + S  S+SIA SEIQ A +L PV +     +S DL AEI++I+KVLD     N++PT+ A      +N  +  TA + +D    +  R         +P     +++ +A     E  +S         N  LN+K+    +   SA +    SK  Q +    + V+   ++G  + +             +AA +P + ++ R+  R D  +  S+K V         S K ++   +   + QRQ    +   N + T               A    LP    I  + + K   +P     D  +  V ++  I +   +    R    +  Q  D     +       +     +RT  D   L+   R  +  I K  ++   +        C +        E+   V    +   N  +  K  +  + K +R+ + SVS+ALR+ARE +MLQG + +K K +   + +    +      K KKR               M+ EEQYNESVL+GF+A     D E+  + +   +  LPP S     V  RDP+LF S        TP  E  N    + +  +K      +++     T  + T+    +G   +   + +    +     +A +   ++   A        G++D +   + + + R   H +P A  E+  Q    +  S  +        D     E  S+    R +L    S+ R RN  D L  + D  KEKR L+     + E +C      D   +  P+  +    T+  E                            G  SE E       A E +   ++ K +F D +VSLMI+TTVELE+VC +L ++K+K   D C
Sbjct:   14 DSILPQPPKRIKVKTLDLPERWLVIPTFTNTVAQLSCYIRTRLSLAEDGDYDIYLDGSLILPEETIEVVRDGDFIHVYPPGQQPPTPQTSHDTNPPSPLNILKGQTTNNTRTLPPRPPGRHPPIQLLFSQNNFRNDELESNSQGPVRATARRISTSDDAESKPRRTLSTEGKKRR-NARXXXXXXXXXXXXXXXXXXRNSSGTEHEPSTKCSVPV-SQNLSTFQPVNSRATPKKSLSETEASKEIVKEVAHTHKETI-------NEKSVGGTNPSSSGLKQNKDSTIPAAPNHETHTKDVKSLYK-EKLSQKDSATTTLKNRDAASELLEEDTVATRQSSQQATERNESRPRLPFGLRKGATTISLPEVIDLLSDDGEEGETLSIENEVLCSSVK-EESIPEVEGAKESNFDNHRKTDFPKEISSIPESASKKTIQSQSLGSHDNQSSRKSMPSSPSVSNPNAEKKCSMIAEGSKAYASTEMRRTESHTKLLGVVSTQANTSLDPLKGSKNRIVHMQLVQESKPTKAPKVRSGSHDISDCAVGSVESVPSISIAASEIQAATQLKPVGHSADKAVSSDLSAEINEIVKVLDDGE--NTTPTSEATLERARNNVSEPHTAMENRDSQSGRSAR---------LPTDGAASDTAIAATT--ETSKSGR-------NLRLNQKQGGELQCPLSAGTTSEKSKKCQLREQ--STVLKGCSSGERRGS-----------RTEAAEKPSEDESDRKAARHDLVHDVSKKRVASDCVVGDPSYKTSDLEQLLVRKKQRQDASCD-FSNSKTT---------------ASQRTLPPESTIADENRSKTGKVPNGAALDGGQGSVAVRQYISELLNEILGFREVGRDGCQSADRNHARLLSRVNNGKCNDPPTRT--DITALETHNRKDLCAIKKAALVNLREVAGDKELTCVQSEHNLSQNETPILVGDRSNCTPNAENELKASNSPSRKRRRKFS-SVSSALRYAREHDMLQGANAIKSKGAIDLKKSWLTNDSEGKPAKRKKRRKSKGKPRPED----MLYEEQYNESVLLGFDACI---DDESLNNAHGTDDCLLPPLSLLESTVDMRDPALFISNDVAESPKTPKNEVLNRVKTRHSPEQKALHCAVEKSAGTPRTCPDATDHRSPHGTENAVEVSGISRSISGTGKSLATVAVCDEIDLAQ-------GHKDNTGKGDRDFEERTDGHGRPYA--EKPVQTDSGKYESSKQPRRVGSKVDQSDRSEANSKQVQRRKELAS--SQHRQRNPEDDLTMETDGEKEKRMLAASKQLADEADCAVNVDMDHEPNTGPSAVEHNDFTTIVERNPEVEECSYKRDSKQGSNIFLSSTIYDGAGSENEFHGHSWKAQEAL-NRYREKEQFFDDLVSLMINTTVELEFVCKKLFSLKNKEENDEC 1365          
The following BLAST results are available for this feature:
BLAST of Gchil7496.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J236_9FLOR3.720e-3224.76Coilin n=1 Tax=Gracilariopsis chorda TaxID=448386 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 815..835
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 537..553
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 271..289
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..204
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 955..969
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1169..1212
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 707..741
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1063..1081
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 707..722
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 927..972
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..185
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 537..575
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 554..568
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 290..308
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 787..837
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1063..1092
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 247..372
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 255..270
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 727..741
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1160..1225
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 317..370
IPR031722Coilin, N-terminal domainPFAMPF15862Coilin_Ncoord: 31..187
e-value: 8.8E-10
score: 38.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1517588..1521505 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7496.t1Gchil7496.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000007_pilon 1517588..1521505 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7496.t1 ID=Gchil7496.t1|Name=Gchil7496.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=1306bp
MPPRLSSADLVRDGGFPQPPRRVRVKTQLLPKTWLVIPSFANTVAQLVCY
LRTRLSLPKDVEYDFYLEGSVILPDETIDILRDGDHIQVYPSGQAPPSGS
HETNPTSSFTRIFNASPMRPPLTPSQQLSSAAETSKEPSNISPRPASTTT
NHTPSPNQALSISRRKRSAEGRRRRNVRNRRREKKRRQEAREAKALEIIP
NSTSSPCIGSEQQATIITLKPREPRRQSQADTMDICRSEMKIPLPYGPAI
FAKRPHRNDASREPAERSSAANSRERMSQVQANSRKTNNIRDNSWDDRAE
KRTEKSSSPDIIEIVVKKNTRTSSGARTDRALSRPHTLRQQSTEARRPEN
SPIENENSRVGLNQPNRRGMASSKVRLRQAVSRTSTPFSTDDASTAKSPG
LAVVNDILETVMNPSNGQKLFTKENPCRKNNTQAVAPASHILLPDGSIAL
AQGGRGTESIHERENPNNSNGLLPKVGFSNASTEHLPSTFSLSIALSEIQ
HAKELNPVVNEKQNLSQDLGAEIDDILKVLDSENMGNSSPTAVANTISEE
SNTDKTASKPKDDMLYQQTRAEGGEGHQTMPISEFCANSQLAPVEAIEYP
RSSEMRAVKELNPLLNEKEYLVEEPGESARSEGIFSKPVQKKVLIANDVI
PAPNTGRDQEACAFDSAMVIHCGLQAAREPKQGKAKRRRVDSDYTFSEKA
VIRSARSSVQSSKFNEGRPIGGTENQRQGRDAEEVENPRGTEIKSRFLEE
ILDLGKALDLNLPETDRITLDEQDKAPAIPQDNMEDVSEKKVGLKHGIEQ
EPAQRNAKMNDTQKKDALQTNVSDETEKIRDARHASRTQEDNEILDEFKR
TAVSDILKGTMLGAAQPCEEERGGAEDMESANAVEKALDSAGNHLSGCKT
GHGMTAKNKRRGALSVSAALRFAREQNMLQGGHKVKRKASEPNVHVQEPL
CLSPKAKKRKKKKRKKSQTSKAIHMIDEEQYNESVLVGFEADSGKHDKEA
QQSENAEFALPPPSWCVIAVGKRDPSLFASTPAVEQANEYGGKQTNARKK
EAQVNAFTHFERTETFGDNGNSGSSSAAVLKEDNTRDTDQIAAIGTKEKF
SKASLVFPSVGGNEDESILHEAEGKYRNHNKPIANCERLGQCPGVELRSP
ARAYVPSFMPDVEPGDEMLSQDDNPRPDLEGKRSKIRLRNTRDLPRKCDF
GKEKRELSGEDSSGENECGDGPESVVPTTFQEKKITSRYEAQGISSEKEK
KFPCAPAGERVPGGFKMKSKFLDGVVSLMIDTTVELEYVCAELSNVKSKN
RDNCL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031722Coilin_N