Gchil2939.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2939.t1
Unique NameGchil2939.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length282
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:338825..339670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog203124.Tery_0999
Preferred namecpcH
PFAMsCpcD,PBS_linker_poly
Max annot lvl1117|Cyanobacteria
KEGG koko:K02286,ko:K05380
KEGG Pathwayko00196,ko01100,map00196,map01100
Evalue1.41e-32
EggNOG OGsCOG0237@1|root,COG0237@2|Bacteria,1G1CU@1117|Cyanobacteria,1H85D@1150|Oscillatoriales
DescriptionBelongs to the phycobilisome linker protein family
COG categoryH
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2939Gchil2939Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 338825..339670 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2939.t1.start1Gchil2939.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 338825..338827 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2939.t1.CDS1Gchil2939.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 338825..339670 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2939.t1.exon1Gchil2939.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 338825..339670 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2939.t1.stop1Gchil2939.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 339668..339670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2939.t1Gchil2939.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 338825..339670 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2939.t1 ID=Gchil2939.t1|Name=Gchil2939.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=282bp
MPSFTAMAYTAFTAPLLVNARPLSFVARQPLAAPVTTRTAPSRCTPRMAF
SSIDRILTTDPVSMPDDVSVAIDAIYKQVLGNAYLMQSERQELAAAESQF
CRSGSVREFVRAIAKSNAYVSRFFDPVSQYRFIELAFKHLLGSAPVSKAQ
YRAAMAKYHEEGYEACIDWFVDSMGYDKDFGEYTVPYGVYKGCYATNELF
NRSVAMRLAPGSSDKERSTMLQYCVLSGGSPSWLSIAKALPPGTEKGTGY
CVGGRYTSTQRNKNAPVRIGTKIPGGVVFSN*
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spliced messenger RNA

>Gchil2939.t1 ID=Gchil2939.t1|Name=Gchil2939.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=846bp|location=Sequence derived from alignment at tig00000106_pilon:338825..339670+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTCTTTCACCGCAATGGCGTACACCGCTTTCACTGCCCCACTGCT
CGTCAATGCCCGCCCGTTGTCTTTTGTAGCGCGTCAACCTCTCGCTGCAC
CCGTCACAACACGTACTGCTCCCTCCCGCTGCACGCCGCGGATGGCATTT
TCTTCTATTGACCGAATCCTCACAACGGACCCTGTATCCATGCCCGATGA
CGTAAGCGTAGCAATCGATGCAATTTACAAGCAGGTGCTCGGTAATGCCT
ACCTCATGCAATCTGAGCGCCAAGAGTTGGCGGCCGCAGAAAGTCAATTT
TGTCGCTCAGGCAGTGTACGCGAATTCGTGCGCGCCATTGCAAAGTCCAA
TGCCTATGTATCTCGCTTTTTTGATCCGGTATCTCAGTATCGTTTCATCG
AGTTAGCTTTCAAGCATCTTTTGGGAAGTGCTCCCGTCTCCAAAGCACAA
TACCGTGCGGCGATGGCCAAGTATCATGAAGAAGGATATGAGGCCTGCAT
TGATTGGTTTGTGGACTCTATGGGATATGATAAGGATTTCGGAGAGTATA
CTGTGCCATACGGCGTGTACAAGGGTTGCTATGCGACTAATGAGCTTTTC
AATCGTAGTGTAGCTATGCGTTTGGCGCCTGGCTCTAGTGATAAGGAGCG
CTCAACCATGCTTCAATACTGTGTGTTGAGCGGTGGCAGCCCTAGCTGGT
TGAGCATCGCCAAGGCCCTGCCTCCGGGAACTGAGAAAGGTACTGGATAT
TGCGTTGGCGGTCGTTATACTTCCACTCAAAGGAACAAGAATGCCCCGGT
CCGGATTGGCACCAAGATTCCTGGCGGGGTTGTCTTTTCAAACTGA
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protein sequence of Gchil2939.t1

>Gchil2939.t1 ID=Gchil2939.t1|Name=Gchil2939.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=282bp
MPSFTAMAYTAFTAPLLVNARPLSFVARQPLAAPVTTRTAPSRCTPRMAF
SSIDRILTTDPVSMPDDVSVAIDAIYKQVLGNAYLMQSERQELAAAESQF
CRSGSVREFVRAIAKSNAYVSRFFDPVSQYRFIELAFKHLLGSAPVSKAQ
YRAAMAKYHEEGYEACIDWFVDSMGYDKDFGEYTVPYGVYKGCYATNELF
NRSVAMRLAPGSSDKERSTMLQYCVLSGGSPSWLSIAKALPPGTEKGTGY
CVGGRYTSTQRNKNAPVRIGTKIPGGVVFSN*
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mRNA from alignment at tig00000106_pilon:338825..339670+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2939.t1 ID=Gchil2939.t1|Name=Gchil2939.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=846bp|location=Sequence derived from alignment at tig00000106_pilon:338825..339670+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCTTCTTTCACCGCAATGGCGTACACCGCTTTCACTGCCCCACTGCT
CGTCAATGCCCGCCCGTTGTCTTTTGTAGCGCGTCAACCTCTCGCTGCAC
CCGTCACAACACGTACTGCTCCCTCCCGCTGCACGCCGCGGATGGCATTT
TCTTCTATTGACCGAATCCTCACAACGGACCCTGTATCCATGCCCGATGA
CGTAAGCGTAGCAATCGATGCAATTTACAAGCAGGTGCTCGGTAATGCCT
ACCTCATGCAATCTGAGCGCCAAGAGTTGGCGGCCGCAGAAAGTCAATTT
TGTCGCTCAGGCAGTGTACGCGAATTCGTGCGCGCCATTGCAAAGTCCAA
TGCCTATGTATCTCGCTTTTTTGATCCGGTATCTCAGTATCGTTTCATCG
AGTTAGCTTTCAAGCATCTTTTGGGAAGTGCTCCCGTCTCCAAAGCACAA
TACCGTGCGGCGATGGCCAAGTATCATGAAGAAGGATATGAGGCCTGCAT
TGATTGGTTTGTGGACTCTATGGGATATGATAAGGATTTCGGAGAGTATA
CTGTGCCATACGGCGTGTACAAGGGTTGCTATGCGACTAATGAGCTTTTC
AATCGTAGTGTAGCTATGCGTTTGGCGCCTGGCTCTAGTGATAAGGAGCG
CTCAACCATGCTTCAATACTGTGTGTTGAGCGGTGGCAGCCCTAGCTGGT
TGAGCATCGCCAAGGCCCTGCCTCCGGGAACTGAGAAAGGTACTGGATAT
TGCGTTGGCGGTCGTTATACTTCCACTCAAAGGAACAAGAATGCCCCGGT
CCGGATTGGCACCAAGATTCCTGGCGGGGTTGTCTTTTCAAACTGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:338825..339670+

>Gchil2939.t1 ID=Gchil2939.t1|Name=Gchil2939.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=846bp|location=Sequence derived from alignment at tig00000106_pilon:338825..339670+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCTTCTTTCACCGCAATGGCGTACACCGCTTTCACTGCCCCACTGCT
CGTCAATGCCCGCCCGTTGTCTTTTGTAGCGCGTCAACCTCTCGCTGCAC
CCGTCACAACACGTACTGCTCCCTCCCGCTGCACGCCGCGGATGGCATTT
TCTTCTATTGACCGAATCCTCACAACGGACCCTGTATCCATGCCCGATGA
CGTAAGCGTAGCAATCGATGCAATTTACAAGCAGGTGCTCGGTAATGCCT
ACCTCATGCAATCTGAGCGCCAAGAGTTGGCGGCCGCAGAAAGTCAATTT
TGTCGCTCAGGCAGTGTACGCGAATTCGTGCGCGCCATTGCAAAGTCCAA
TGCCTATGTATCTCGCTTTTTTGATCCGGTATCTCAGTATCGTTTCATCG
AGTTAGCTTTCAAGCATCTTTTGGGAAGTGCTCCCGTCTCCAAAGCACAA
TACCGTGCGGCGATGGCCAAGTATCATGAAGAAGGATATGAGGCCTGCAT
TGATTGGTTTGTGGACTCTATGGGATATGATAAGGATTTCGGAGAGTATA
CTGTGCCATACGGCGTGTACAAGGGTTGCTATGCGACTAATGAGCTTTTC
AATCGTAGTGTAGCTATGCGTTTGGCGCCTGGCTCTAGTGATAAGGAGCG
CTCAACCATGCTTCAATACTGTGTGTTGAGCGGTGGCAGCCCTAGCTGGT
TGAGCATCGCCAAGGCCCTGCCTCCGGGAACTGAGAAAGGTACTGGATAT
TGCGTTGGCGGTCGTTATACTTCCACTCAAAGGAACAAGAATGCCCCGGT
CCGGATTGGCACCAAGATTCCTGGCGGGGTTGTCTTTTCAAACTGA
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