Gchil7511.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7511.t1
Unique Name	Gchil7511.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	753

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000007_pilon	contig	tig00000007_pilon:1641009..1643267 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703391.1
Preferred name	TBCCD1
PFAMs	TBCC
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K16810
GOs	GO:0000922,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0008150,GO:0008360,GO:0009987,GO:0015630,GO:0022603,GO:0022604,GO:0030334,GO:0031616,GO:0032879,GO:0040012,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051235,GO:0051270,GO:0051640,GO:0051641,GO:0051642,GO:0051645,GO:0051651,GO:0051657,GO:0051661,GO:0051684,GO:0061842,GO:0065007,GO:0065008,GO:2000145
Evalue	1.38e-28
EggNOG OGs	KOG4416@1\|root,KOG4416@2759\|Eukaryota
Description	maintenance of Golgi location
COG category	S
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7511	Gchil7511	Gracilaria chilensis NLEC103_M9 male	gene	tig00000007_pilon 1641009..1643267 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7511.t1.stop1	Gchil7511.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000007_pilon 1641009..1641011 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7511.t1.CDS1	Gchil7511.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000007_pilon 1641009..1643267 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7511.t1.exon1	Gchil7511.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000007_pilon 1641009..1643267 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7511.t1.start1	Gchil7511.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000007_pilon 1643265..1643267 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7511.t1	Gchil7511.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000007_pilon 1641009..1643267 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000007_pilon:1641009..1643267-
coding sequence from alignment at tig00000007_pilon:1641009..1643267-

mRNA sequence

>Gchil7511.t1 ID=Gchil7511.t1|Name=Gchil7511.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=753bp
MDDAEPEVIGPLWIRRQVFEHSVAVPILTISKASQIDFPRLADELLAANI
VTDRSAPPAVTYDAWVAAAGLHARLDSSEDAGIIIEALETNAPDAFVRCN
EPEKLAPGRQLNYRCLLIPVPELLAFLRLHALATIASRFREQADAVWPDA
DQAIAPSTPAPTSPLPLANESGPKGQFQGIPLLPVSQTSSPRASQPSAPI
SPRMHQSHLSPHGSPHPQSPAPPSSPTLEGLTRKKTPTRLGSMIQTKSAI
IASVQHAFQRETRLVVANLKTLLLTIASAYGIAPTSSISMDVFQHESGIV
MGGGTVAVESGTLERQNGHGSLKRSNSLGSGQRSTSKDENAKNSAKNLPI
TSQMFEHMAFLLTTTCDPSGSYRPISWVIPQWREGQNTNPIPLKELVSMV
TDAITRIPLLQEAEGSTDVVEIRDIERRTILRSSIPATNASVTEYPHARE
VRIANCSDCHFYLLQSLGRVSFIACRDCTLFIGACVSTSLINCVNVRLHA
ISRVCRVTNCVDTHLYICTNRNPQIVGENRGLVFAPYNAAYSKSELEKHL
AAVGVDPDANVWDKFYRPAYRSTFMTDRKDPDLTPSVATILPPERFLPFA
VPVRSSQPLNIQDSDHMQTESDNEQERDATTRLLFSIPLPLPEAYQEQLA
QKRSEMLSFRTEIRKMEKKHAALNHTQSESGSDGPEGKNDVSMSDSVGPA
PVAQNEEQMGSPPPTKKTVFQFMVNQRFREWLTNSGRIRQLNDLVRLEEV
QR*

spliced messenger RNA

>Gchil7511.t1 ID=Gchil7511.t1|Name=Gchil7511.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2259bp|location=Sequence derived from alignment at tig00000007_pilon:1641009..1643267- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGATGCGGAACCAGAGGTGATCGGACCTCTATGGATCCGTCGTCA
AGTCTTTGAGCATTCTGTTGCCGTTCCCATTCTAACTATTTCGAAAGCAT
CGCAAATAGATTTCCCACGTCTTGCGGATGAGCTACTAGCCGCTAATATT
GTCACAGACCGCTCTGCCCCACCAGCTGTGACGTACGATGCGTGGGTGGC
GGCTGCAGGACTACATGCGCGTTTAGATTCCTCTGAGGACGCTGGTATTA
TCATTGAGGCTTTGGAAACCAACGCTCCAGATGCGTTCGTGAGGTGTAAT
GAACCCGAAAAGCTAGCACCAGGTCGCCAATTGAACTACCGATGCCTTCT
CATTCCTGTTCCTGAGTTGCTTGCATTTCTTCGGCTGCATGCCCTGGCAA
CTATCGCAAGTCGCTTTAGAGAACAGGCTGACGCAGTCTGGCCAGACGCC
GATCAAGCCATTGCACCGTCAACGCCGGCCCCGACCTCTCCGCTACCTCT
AGCGAACGAAAGTGGGCCGAAAGGGCAATTTCAAGGCATACCATTGCTTC
CGGTTTCGCAGACGTCTTCGCCTCGTGCTTCCCAGCCTTCTGCTCCGATT
TCGCCTCGTATGCATCAATCACACCTCTCTCCCCACGGATCACCGCATCC
CCAATCGCCTGCACCACCAAGCAGTCCCACTTTAGAAGGATTAACAAGAA
AGAAAACCCCTACCCGCCTTGGCTCTATGATTCAGACAAAGTCAGCAATC
ATTGCGTCTGTGCAGCATGCATTTCAACGGGAGACAAGGCTTGTGGTGGC
AAACTTGAAAACTCTGTTGCTTACCATCGCTTCTGCCTACGGTATCGCTC
CGACGTCGAGTATTTCTATGGATGTATTTCAGCACGAAAGTGGAATTGTA
ATGGGAGGGGGGACAGTTGCAGTAGAAAGTGGAACCTTGGAACGACAAAA
TGGGCACGGATCCCTAAAAAGGTCTAATTCTCTTGGCTCCGGTCAACGAA
GCACGTCAAAGGATGAGAATGCGAAAAACTCAGCAAAGAATCTCCCGATT
ACAAGCCAGATGTTTGAACATATGGCCTTTCTACTTACGACTACTTGTGA
CCCTTCTGGTTCGTATAGGCCCATATCATGGGTCATACCGCAATGGAGGG
AAGGGCAGAACACTAATCCAATTCCTTTGAAAGAGCTCGTTAGTATGGTA
ACGGACGCTATAACTCGTATTCCCTTGTTACAAGAGGCGGAAGGGTCCAC
TGACGTCGTTGAGATCCGTGATATTGAACGGAGGACAATTCTTAGGTCGT
CCATACCTGCAACCAATGCGAGTGTGACGGAATATCCGCACGCAAGAGAG
GTTCGCATCGCCAACTGCTCAGATTGTCACTTCTACCTGCTGCAGTCCTT
GGGGCGAGTTTCATTCATCGCATGTCGTGATTGCACGTTGTTCATTGGGG
CATGTGTGTCTACGTCTCTCATTAACTGCGTTAATGTGCGTCTTCATGCA
ATTTCTCGGGTATGTCGCGTGACCAACTGTGTCGACACTCATCTATACAT
ATGTACGAATAGAAACCCGCAAATCGTGGGGGAAAACCGGGGGTTGGTGT
TTGCCCCATATAATGCAGCCTATAGCAAATCAGAGCTTGAAAAGCATCTC
GCTGCTGTTGGTGTTGATCCTGACGCCAATGTATGGGATAAGTTTTACAG
ACCAGCCTACCGCTCGACGTTTATGACGGATAGAAAAGACCCCGACCTTA
CTCCTTCAGTGGCTACAATTTTGCCCCCTGAGCGATTTCTGCCTTTCGCC
GTGCCCGTGCGATCGTCTCAACCTCTCAACATACAGGACAGTGATCATAT
GCAGACAGAAAGCGACAATGAACAAGAAAGGGATGCTACCACACGGTTGC
TTTTTTCGATACCTCTTCCATTGCCTGAAGCTTATCAGGAGCAACTGGCT
CAGAAACGGTCTGAGATGCTCTCATTTCGGACAGAGATACGTAAGATGGA
AAAGAAACATGCCGCCCTTAACCATACACAGTCAGAAAGTGGGAGTGACG
GGCCGGAAGGAAAAAACGATGTATCTATGAGTGACAGCGTTGGTCCTGCA
CCAGTTGCTCAGAACGAAGAGCAAATGGGTTCCCCACCACCTACAAAGAA
AACTGTGTTCCAGTTTATGGTGAACCAACGATTCCGCGAGTGGCTTACTA
ACTCTGGTAGAATAAGGCAGCTCAATGACTTGGTGAGACTAGAAGAAGTT
CAAAGATGA

protein sequence of Gchil7511.t1

>Gchil7511.t1 ID=Gchil7511.t1|Name=Gchil7511.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=753bp
MDDAEPEVIGPLWIRRQVFEHSVAVPILTISKASQIDFPRLADELLAANI
VTDRSAPPAVTYDAWVAAAGLHARLDSSEDAGIIIEALETNAPDAFVRCN
EPEKLAPGRQLNYRCLLIPVPELLAFLRLHALATIASRFREQADAVWPDA
DQAIAPSTPAPTSPLPLANESGPKGQFQGIPLLPVSQTSSPRASQPSAPI
SPRMHQSHLSPHGSPHPQSPAPPSSPTLEGLTRKKTPTRLGSMIQTKSAI
IASVQHAFQRETRLVVANLKTLLLTIASAYGIAPTSSISMDVFQHESGIV
MGGGTVAVESGTLERQNGHGSLKRSNSLGSGQRSTSKDENAKNSAKNLPI
TSQMFEHMAFLLTTTCDPSGSYRPISWVIPQWREGQNTNPIPLKELVSMV
TDAITRIPLLQEAEGSTDVVEIRDIERRTILRSSIPATNASVTEYPHARE
VRIANCSDCHFYLLQSLGRVSFIACRDCTLFIGACVSTSLINCVNVRLHA
ISRVCRVTNCVDTHLYICTNRNPQIVGENRGLVFAPYNAAYSKSELEKHL
AAVGVDPDANVWDKFYRPAYRSTFMTDRKDPDLTPSVATILPPERFLPFA
VPVRSSQPLNIQDSDHMQTESDNEQERDATTRLLFSIPLPLPEAYQEQLA
QKRSEMLSFRTEIRKMEKKHAALNHTQSESGSDGPEGKNDVSMSDSVGPA
PVAQNEEQMGSPPPTKKTVFQFMVNQRFREWLTNSGRIRQLNDLVRLEEV
QR*

mRNA from alignment at tig00000007_pilon:1641009..1643267-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7511.t1 ID=Gchil7511.t1|Name=Gchil7511.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2259bp|location=Sequence derived from alignment at tig00000007_pilon:1641009..1643267- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGATGCGGAACCAGAGGTGATCGGACCTCTATGGATCCGTCGTCA
AGTCTTTGAGCATTCTGTTGCCGTTCCCATTCTAACTATTTCGAAAGCAT
CGCAAATAGATTTCCCACGTCTTGCGGATGAGCTACTAGCCGCTAATATT
GTCACAGACCGCTCTGCCCCACCAGCTGTGACGTACGATGCGTGGGTGGC
GGCTGCAGGACTACATGCGCGTTTAGATTCCTCTGAGGACGCTGGTATTA
TCATTGAGGCTTTGGAAACCAACGCTCCAGATGCGTTCGTGAGGTGTAAT
GAACCCGAAAAGCTAGCACCAGGTCGCCAATTGAACTACCGATGCCTTCT
CATTCCTGTTCCTGAGTTGCTTGCATTTCTTCGGCTGCATGCCCTGGCAA
CTATCGCAAGTCGCTTTAGAGAACAGGCTGACGCAGTCTGGCCAGACGCC
GATCAAGCCATTGCACCGTCAACGCCGGCCCCGACCTCTCCGCTACCTCT
AGCGAACGAAAGTGGGCCGAAAGGGCAATTTCAAGGCATACCATTGCTTC
CGGTTTCGCAGACGTCTTCGCCTCGTGCTTCCCAGCCTTCTGCTCCGATT
TCGCCTCGTATGCATCAATCACACCTCTCTCCCCACGGATCACCGCATCC
CCAATCGCCTGCACCACCAAGCAGTCCCACTTTAGAAGGATTAACAAGAA
AGAAAACCCCTACCCGCCTTGGCTCTATGATTCAGACAAAGTCAGCAATC
ATTGCGTCTGTGCAGCATGCATTTCAACGGGAGACAAGGCTTGTGGTGGC
AAACTTGAAAACTCTGTTGCTTACCATCGCTTCTGCCTACGGTATCGCTC
CGACGTCGAGTATTTCTATGGATGTATTTCAGCACGAAAGTGGAATTGTA
ATGGGAGGGGGGACAGTTGCAGTAGAAAGTGGAACCTTGGAACGACAAAA
TGGGCACGGATCCCTAAAAAGGTCTAATTCTCTTGGCTCCGGTCAACGAA
GCACGTCAAAGGATGAGAATGCGAAAAACTCAGCAAAGAATCTCCCGATT
ACAAGCCAGATGTTTGAACATATGGCCTTTCTACTTACGACTACTTGTGA
CCCTTCTGGTTCGTATAGGCCCATATCATGGGTCATACCGCAATGGAGGG
AAGGGCAGAACACTAATCCAATTCCTTTGAAAGAGCTCGTTAGTATGGTA
ACGGACGCTATAACTCGTATTCCCTTGTTACAAGAGGCGGAAGGGTCCAC
TGACGTCGTTGAGATCCGTGATATTGAACGGAGGACAATTCTTAGGTCGT
CCATACCTGCAACCAATGCGAGTGTGACGGAATATCCGCACGCAAGAGAG
GTTCGCATCGCCAACTGCTCAGATTGTCACTTCTACCTGCTGCAGTCCTT
GGGGCGAGTTTCATTCATCGCATGTCGTGATTGCACGTTGTTCATTGGGG
CATGTGTGTCTACGTCTCTCATTAACTGCGTTAATGTGCGTCTTCATGCA
ATTTCTCGGGTATGTCGCGTGACCAACTGTGTCGACACTCATCTATACAT
ATGTACGAATAGAAACCCGCAAATCGTGGGGGAAAACCGGGGGTTGGTGT
TTGCCCCATATAATGCAGCCTATAGCAAATCAGAGCTTGAAAAGCATCTC
GCTGCTGTTGGTGTTGATCCTGACGCCAATGTATGGGATAAGTTTTACAG
ACCAGCCTACCGCTCGACGTTTATGACGGATAGAAAAGACCCCGACCTTA
CTCCTTCAGTGGCTACAATTTTGCCCCCTGAGCGATTTCTGCCTTTCGCC
GTGCCCGTGCGATCGTCTCAACCTCTCAACATACAGGACAGTGATCATAT
GCAGACAGAAAGCGACAATGAACAAGAAAGGGATGCTACCACACGGTTGC
TTTTTTCGATACCTCTTCCATTGCCTGAAGCTTATCAGGAGCAACTGGCT
CAGAAACGGTCTGAGATGCTCTCATTTCGGACAGAGATACGTAAGATGGA
AAAGAAACATGCCGCCCTTAACCATACACAGTCAGAAAGTGGGAGTGACG
GGCCGGAAGGAAAAAACGATGTATCTATGAGTGACAGCGTTGGTCCTGCA
CCAGTTGCTCAGAACGAAGAGCAAATGGGTTCCCCACCACCTACAAAGAA
AACTGTGTTCCAGTTTATGGTGAACCAACGATTCCGCGAGTGGCTTACTA
ACTCTGGTAGAATAAGGCAGCTCAATGACTTGGTGAGACTAGAAGAAGTT
CAAAGATGA

Coding sequence (CDS) from alignment at tig00000007_pilon:1641009..1643267-

>Gchil7511.t1 ID=Gchil7511.t1|Name=Gchil7511.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2259bp|location=Sequence derived from alignment at tig00000007_pilon:1641009..1643267- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGATGCGGAACCAGAGGTGATCGGACCTCTATGGATCCGTCGTCA
AGTCTTTGAGCATTCTGTTGCCGTTCCCATTCTAACTATTTCGAAAGCAT
CGCAAATAGATTTCCCACGTCTTGCGGATGAGCTACTAGCCGCTAATATT
GTCACAGACCGCTCTGCCCCACCAGCTGTGACGTACGATGCGTGGGTGGC
GGCTGCAGGACTACATGCGCGTTTAGATTCCTCTGAGGACGCTGGTATTA
TCATTGAGGCTTTGGAAACCAACGCTCCAGATGCGTTCGTGAGGTGTAAT
GAACCCGAAAAGCTAGCACCAGGTCGCCAATTGAACTACCGATGCCTTCT
CATTCCTGTTCCTGAGTTGCTTGCATTTCTTCGGCTGCATGCCCTGGCAA
CTATCGCAAGTCGCTTTAGAGAACAGGCTGACGCAGTCTGGCCAGACGCC
GATCAAGCCATTGCACCGTCAACGCCGGCCCCGACCTCTCCGCTACCTCT
AGCGAACGAAAGTGGGCCGAAAGGGCAATTTCAAGGCATACCATTGCTTC
CGGTTTCGCAGACGTCTTCGCCTCGTGCTTCCCAGCCTTCTGCTCCGATT
TCGCCTCGTATGCATCAATCACACCTCTCTCCCCACGGATCACCGCATCC
CCAATCGCCTGCACCACCAAGCAGTCCCACTTTAGAAGGATTAACAAGAA
AGAAAACCCCTACCCGCCTTGGCTCTATGATTCAGACAAAGTCAGCAATC
ATTGCGTCTGTGCAGCATGCATTTCAACGGGAGACAAGGCTTGTGGTGGC
AAACTTGAAAACTCTGTTGCTTACCATCGCTTCTGCCTACGGTATCGCTC
CGACGTCGAGTATTTCTATGGATGTATTTCAGCACGAAAGTGGAATTGTA
ATGGGAGGGGGGACAGTTGCAGTAGAAAGTGGAACCTTGGAACGACAAAA
TGGGCACGGATCCCTAAAAAGGTCTAATTCTCTTGGCTCCGGTCAACGAA
GCACGTCAAAGGATGAGAATGCGAAAAACTCAGCAAAGAATCTCCCGATT
ACAAGCCAGATGTTTGAACATATGGCCTTTCTACTTACGACTACTTGTGA
CCCTTCTGGTTCGTATAGGCCCATATCATGGGTCATACCGCAATGGAGGG
AAGGGCAGAACACTAATCCAATTCCTTTGAAAGAGCTCGTTAGTATGGTA
ACGGACGCTATAACTCGTATTCCCTTGTTACAAGAGGCGGAAGGGTCCAC
TGACGTCGTTGAGATCCGTGATATTGAACGGAGGACAATTCTTAGGTCGT
CCATACCTGCAACCAATGCGAGTGTGACGGAATATCCGCACGCAAGAGAG
GTTCGCATCGCCAACTGCTCAGATTGTCACTTCTACCTGCTGCAGTCCTT
GGGGCGAGTTTCATTCATCGCATGTCGTGATTGCACGTTGTTCATTGGGG
CATGTGTGTCTACGTCTCTCATTAACTGCGTTAATGTGCGTCTTCATGCA
ATTTCTCGGGTATGTCGCGTGACCAACTGTGTCGACACTCATCTATACAT
ATGTACGAATAGAAACCCGCAAATCGTGGGGGAAAACCGGGGGTTGGTGT
TTGCCCCATATAATGCAGCCTATAGCAAATCAGAGCTTGAAAAGCATCTC
GCTGCTGTTGGTGTTGATCCTGACGCCAATGTATGGGATAAGTTTTACAG
ACCAGCCTACCGCTCGACGTTTATGACGGATAGAAAAGACCCCGACCTTA
CTCCTTCAGTGGCTACAATTTTGCCCCCTGAGCGATTTCTGCCTTTCGCC
GTGCCCGTGCGATCGTCTCAACCTCTCAACATACAGGACAGTGATCATAT
GCAGACAGAAAGCGACAATGAACAAGAAAGGGATGCTACCACACGGTTGC
TTTTTTCGATACCTCTTCCATTGCCTGAAGCTTATCAGGAGCAACTGGCT
CAGAAACGGTCTGAGATGCTCTCATTTCGGACAGAGATACGTAAGATGGA
AAAGAAACATGCCGCCCTTAACCATACACAGTCAGAAAGTGGGAGTGACG
GGCCGGAAGGAAAAAACGATGTATCTATGAGTGACAGCGTTGGTCCTGCA
CCAGTTGCTCAGAACGAAGAGCAAATGGGTTCCCCACCACCTACAAAGAA
AACTGTGTTCCAGTTTATGGTGAACCAACGATTCCGCGAGTGGCTTACTA
ACTCTGGTAGAATAAGGCAGCTCAATGACTTGGTGAGACTAGAAGAAGTT
CAAAGATGA