Gchil3024.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3024.t1
Unique NameGchil3024.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length651
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1152470..1154550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702894.1
PFAMsEF_assoc_1,EF_assoc_2,Ras
Max annot lvl2759|Eukaryota
KEGG koko:K06883,ko:K07870
KEGG Pathwayko04137,ko04214,map04137,map04214
GOsGO:0000003,GO:0000902,GO:0000904,GO:0001101,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006810,GO:0006839,GO:0006915,GO:0006928,GO:0006996,GO:0007005,GO:0007006,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008219,GO:0008637,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009790,GO:0009791,GO:0009793,GO:0009826,GO:0009856,GO:0009860,GO:0009932,GO:0009987,GO:0010033,GO:0010154,GO:0010970,GO:0012501,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019725,GO:0019867,GO:0022414,GO:0023052,GO:0030154,GO:0030705,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032501,GO:0032502,GO:0032592,GO:0032989,GO:0033993,GO:0034643,GO:0035794,GO:0040007,GO:0042221,GO:0042592,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044706,GO:0046872,GO:0046902,GO:0046907,GO:0047497,GO:0048316,GO:0048468,GO:0048588,GO:0048589,GO:0048608,GO:0048731,GO:0048856,GO:0048868,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051646,GO:0051649,GO:0051654,GO:0051656,GO:0051704,GO:0051716,GO:0060560,GO:0061024,GO:0061458,GO:0065007,GO:0065008,GO:0071840,GO:0072384,GO:0090559,GO:0097190,GO:0097305,GO:0097345,GO:0098573,GO:0098588,GO:0098805,GO:0099111,GO:1901700,GO:1902108,GO:1902110,GO:1902686,GO:1905710
Evalue4.74e-148
EggNOG OGsCOG1100@1|root,KOG1707@2759|Eukaryota
DescriptionGTPase activity
COG categoryF
BRITEko00000,ko00001,ko01000,ko03029,ko04031
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3024Gchil3024Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1152470..1154550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3024.t1Gchil3024.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1152470..1154550 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3024.t1.start1Gchil3024.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1152470..1152472 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3024.t1.CDS1Gchil3024.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1152470..1152506 +
Gchil3024.t1.CDS2Gchil3024.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1152635..1154550 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3024.t1.exon1Gchil3024.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1152470..1152506 +
Gchil3024.t1.exon2Gchil3024.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1152635..1154550 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3024.t1.intron1Gchil3024.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 1152507..1152634 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3024.t1.stop1Gchil3024.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1154548..1154550 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3024.t1 ID=Gchil3024.t1|Name=Gchil3024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=651bp
MKDSARIVVVGDENVGKTSIIEVLITEKFQPNVQPVLPVVIVPKNVTPER
VNVSIVDTPGDPLQVEKVDENLKSADVIVLVYDVNNELSTRRVSSHWLPK
FRASRLNVPVILVGNKIDLRGGIADPTAAAKMEEFIKPIMDDFREVDVCI
ECSAKTVSNISEVFYFAQKAVLYPTGQVYDVDKHSLKPDANTALRRIFNL
CDKDGDGGLNDKELNDFQYHCFNVYLKEEELDGVKKVVRESCPQRGINSD
GSLSEEGFIFLHTLFVQKGRLETTWIVLRKFGYDDYMRLQLDESEIPPCN
DDQTIELSAEGKSFLGNLFAAADSDADGMLSPNELRKLFAACPDGPFAVK
KKVLGDRLTNKSDETGKEGYMTLEAFMARWTMFLVDSVADCLLSFKYLGY
NDEKSALKVTKGKRRDRYNRAVSKDVISVSVLGRDGSLKTDIVRGLVGMG
GNGLDSGNAMSCADVSYMERDRNDVPTEISKTVVLRQIPEESMSSYFASR
RELESTDVMCIVFNGGDEDSLEKARLIWQAVDAKKPAIKMPFVLVACVTQ
EMIANGSEVLDRADKMCVERDLPTATRVSVEEGEYGSLYADLLGVALHPE
VICEDYYEGVSDRRSSLATAAKWTAVAVAGGVVIYGAKRAYDYYTTKTSS
*
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spliced messenger RNA

>Gchil3024.t1 ID=Gchil3024.t1|Name=Gchil3024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1953bp|location=Sequence derived from alignment at tig00000106_pilon:1152470..1154550+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGACTCGGCCAGAATCGTCGTCGTTGGTGATGAGAATGTTGGTAA
AACATCAATCATCGAGGTTCTCATCACTGAAAAGTTCCAACCCAATGTAC
AACCTGTTCTACCCGTTGTAATCGTGCCCAAGAACGTAACCCCAGAACGC
GTAAATGTGTCCATTGTCGACACACCTGGAGACCCCCTACAAGTTGAAAA
GGTAGATGAAAACCTCAAATCAGCAGACGTAATCGTTCTTGTCTACGATG
TCAACAACGAATTATCCACCAGACGAGTGTCCTCACATTGGTTGCCCAAG
TTTCGAGCTTCCCGACTCAACGTTCCTGTCATTCTTGTCGGAAATAAGAT
TGATCTGAGGGGCGGTATAGCAGATCCCACCGCCGCAGCCAAGATGGAGG
AATTCATCAAGCCCATCATGGACGATTTCAGAGAGGTTGATGTTTGCATA
GAATGCTCGGCGAAAACTGTGTCAAACATTTCAGAGGTGTTTTATTTCGC
CCAGAAAGCTGTGCTCTATCCCACGGGCCAGGTGTACGACGTTGACAAGC
ACTCTTTGAAGCCCGATGCCAACACCGCCTTACGTCGAATATTCAATCTT
TGTGACAAGGATGGCGATGGCGGACTCAACGACAAGGAACTGAACGATTT
TCAGTATCACTGCTTCAATGTGTATCTGAAAGAAGAAGAATTAGATGGCG
TGAAGAAAGTTGTCAGAGAAAGCTGCCCACAAAGAGGAATCAATTCGGAT
GGATCGCTTTCTGAGGAGGGCTTTATCTTTCTGCACACCCTGTTTGTACA
GAAAGGAAGGCTAGAAACCACGTGGATTGTTCTCCGCAAGTTCGGGTATG
ACGACTACATGCGATTACAATTAGACGAGTCTGAAATTCCGCCGTGCAAC
GACGATCAAACCATCGAGTTAAGTGCGGAGGGAAAGAGCTTCCTTGGCAA
TTTGTTCGCAGCGGCTGATTCAGATGCCGACGGAATGCTGTCGCCCAATG
AGCTTCGCAAACTATTTGCTGCATGCCCTGATGGACCGTTTGCTGTGAAA
AAGAAGGTTTTGGGCGACAGATTGACGAACAAAAGTGACGAAACTGGAAA
GGAGGGCTACATGACGCTAGAGGCATTTATGGCGCGATGGACCATGTTTC
TGGTGGACAGTGTGGCAGATTGCTTGCTCAGTTTCAAGTACCTCGGGTAT
AACGATGAGAAGAGTGCGCTCAAGGTGACGAAGGGAAAAAGACGGGACCG
ATATAATCGTGCTGTCAGCAAGGATGTTATTAGCGTTTCTGTGCTTGGGA
GGGACGGCAGTTTGAAGACGGACATAGTGCGCGGTCTAGTGGGAATGGGT
GGCAATGGTCTGGACAGTGGTAATGCAATGTCCTGCGCAGACGTGTCATA
CATGGAACGGGATCGAAACGACGTGCCGACTGAGATTAGCAAAACGGTAG
TGCTACGCCAGATACCTGAAGAAAGCATGAGCTCGTATTTTGCTTCAAGA
CGTGAGCTGGAGAGCACTGATGTGATGTGCATTGTGTTCAATGGCGGTGA
TGAGGACTCTCTGGAGAAGGCGCGATTGATCTGGCAGGCGGTGGATGCGA
AAAAGCCCGCGATCAAGATGCCGTTCGTGCTGGTAGCGTGTGTGACGCAG
GAAATGATAGCGAACGGGAGTGAGGTGCTGGATCGGGCGGATAAAATGTG
CGTGGAACGCGATCTGCCTACGGCGACGCGTGTGTCGGTGGAAGAGGGCG
AGTACGGATCGCTGTACGCGGACTTGCTGGGGGTGGCGCTGCACCCGGAG
GTGATCTGCGAGGACTACTACGAGGGGGTGTCAGACAGACGCTCGTCGCT
GGCGACGGCGGCGAAATGGACGGCTGTGGCAGTGGCGGGGGGCGTTGTAA
TATACGGGGCAAAACGAGCTTATGACTACTACACGACGAAGACGTCGTCG
TGA
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protein sequence of Gchil3024.t1

>Gchil3024.t1 ID=Gchil3024.t1|Name=Gchil3024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=651bp
MKDSARIVVVGDENVGKTSIIEVLITEKFQPNVQPVLPVVIVPKNVTPER
VNVSIVDTPGDPLQVEKVDENLKSADVIVLVYDVNNELSTRRVSSHWLPK
FRASRLNVPVILVGNKIDLRGGIADPTAAAKMEEFIKPIMDDFREVDVCI
ECSAKTVSNISEVFYFAQKAVLYPTGQVYDVDKHSLKPDANTALRRIFNL
CDKDGDGGLNDKELNDFQYHCFNVYLKEEELDGVKKVVRESCPQRGINSD
GSLSEEGFIFLHTLFVQKGRLETTWIVLRKFGYDDYMRLQLDESEIPPCN
DDQTIELSAEGKSFLGNLFAAADSDADGMLSPNELRKLFAACPDGPFAVK
KKVLGDRLTNKSDETGKEGYMTLEAFMARWTMFLVDSVADCLLSFKYLGY
NDEKSALKVTKGKRRDRYNRAVSKDVISVSVLGRDGSLKTDIVRGLVGMG
GNGLDSGNAMSCADVSYMERDRNDVPTEISKTVVLRQIPEESMSSYFASR
RELESTDVMCIVFNGGDEDSLEKARLIWQAVDAKKPAIKMPFVLVACVTQ
EMIANGSEVLDRADKMCVERDLPTATRVSVEEGEYGSLYADLLGVALHPE
VICEDYYEGVSDRRSSLATAAKWTAVAVAGGVVIYGAKRAYDYYTTKTSS
*
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mRNA from alignment at tig00000106_pilon:1152470..1154550+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3024.t1 ID=Gchil3024.t1|Name=Gchil3024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2081bp|location=Sequence derived from alignment at tig00000106_pilon:1152470..1154550+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGGACTCGGCCAGAATCGTCGTCGTTGGTGATGGTATGCTTTGTTT
TATCCCCTGCGTTTTTGAGCTCTCGCCTCGTACATCCTAGATGTTATTAC
GTCTGTGTCAACTGACTGTTTGTTCCTTTAAAACCTTTTTTTGCTCTCTT
TGTTGGCTCTTTTAGAGAATGTTGGTAAAACATCAATCATCGAGGTTCTC
ATCACTGAAAAGTTCCAACCCAATGTACAACCTGTTCTACCCGTTGTAAT
CGTGCCCAAGAACGTAACCCCAGAACGCGTAAATGTGTCCATTGTCGACA
CACCTGGAGACCCCCTACAAGTTGAAAAGGTAGATGAAAACCTCAAATCA
GCAGACGTAATCGTTCTTGTCTACGATGTCAACAACGAATTATCCACCAG
ACGAGTGTCCTCACATTGGTTGCCCAAGTTTCGAGCTTCCCGACTCAACG
TTCCTGTCATTCTTGTCGGAAATAAGATTGATCTGAGGGGCGGTATAGCA
GATCCCACCGCCGCAGCCAAGATGGAGGAATTCATCAAGCCCATCATGGA
CGATTTCAGAGAGGTTGATGTTTGCATAGAATGCTCGGCGAAAACTGTGT
CAAACATTTCAGAGGTGTTTTATTTCGCCCAGAAAGCTGTGCTCTATCCC
ACGGGCCAGGTGTACGACGTTGACAAGCACTCTTTGAAGCCCGATGCCAA
CACCGCCTTACGTCGAATATTCAATCTTTGTGACAAGGATGGCGATGGCG
GACTCAACGACAAGGAACTGAACGATTTTCAGTATCACTGCTTCAATGTG
TATCTGAAAGAAGAAGAATTAGATGGCGTGAAGAAAGTTGTCAGAGAAAG
CTGCCCACAAAGAGGAATCAATTCGGATGGATCGCTTTCTGAGGAGGGCT
TTATCTTTCTGCACACCCTGTTTGTACAGAAAGGAAGGCTAGAAACCACG
TGGATTGTTCTCCGCAAGTTCGGGTATGACGACTACATGCGATTACAATT
AGACGAGTCTGAAATTCCGCCGTGCAACGACGATCAAACCATCGAGTTAA
GTGCGGAGGGAAAGAGCTTCCTTGGCAATTTGTTCGCAGCGGCTGATTCA
GATGCCGACGGAATGCTGTCGCCCAATGAGCTTCGCAAACTATTTGCTGC
ATGCCCTGATGGACCGTTTGCTGTGAAAAAGAAGGTTTTGGGCGACAGAT
TGACGAACAAAAGTGACGAAACTGGAAAGGAGGGCTACATGACGCTAGAG
GCATTTATGGCGCGATGGACCATGTTTCTGGTGGACAGTGTGGCAGATTG
CTTGCTCAGTTTCAAGTACCTCGGGTATAACGATGAGAAGAGTGCGCTCA
AGGTGACGAAGGGAAAAAGACGGGACCGATATAATCGTGCTGTCAGCAAG
GATGTTATTAGCGTTTCTGTGCTTGGGAGGGACGGCAGTTTGAAGACGGA
CATAGTGCGCGGTCTAGTGGGAATGGGTGGCAATGGTCTGGACAGTGGTA
ATGCAATGTCCTGCGCAGACGTGTCATACATGGAACGGGATCGAAACGAC
GTGCCGACTGAGATTAGCAAAACGGTAGTGCTACGCCAGATACCTGAAGA
AAGCATGAGCTCGTATTTTGCTTCAAGACGTGAGCTGGAGAGCACTGATG
TGATGTGCATTGTGTTCAATGGCGGTGATGAGGACTCTCTGGAGAAGGCG
CGATTGATCTGGCAGGCGGTGGATGCGAAAAAGCCCGCGATCAAGATGCC
GTTCGTGCTGGTAGCGTGTGTGACGCAGGAAATGATAGCGAACGGGAGTG
AGGTGCTGGATCGGGCGGATAAAATGTGCGTGGAACGCGATCTGCCTACG
GCGACGCGTGTGTCGGTGGAAGAGGGCGAGTACGGATCGCTGTACGCGGA
CTTGCTGGGGGTGGCGCTGCACCCGGAGGTGATCTGCGAGGACTACTACG
AGGGGGTGTCAGACAGACGCTCGTCGCTGGCGACGGCGGCGAAATGGACG
GCTGTGGCAGTGGCGGGGGGCGTTGTAATATACGGGGCAAAACGAGCTTA
TGACTACTACACGACGAAGACGTCGTCGTGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:1152470..1154550+

>Gchil3024.t1 ID=Gchil3024.t1|Name=Gchil3024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1953bp|location=Sequence derived from alignment at tig00000106_pilon:1152470..1154550+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGGACTCGGCCAGAATCGTCGTCGTTGGTGATGAGAATGTTGGTAA
AACATCAATCATCGAGGTTCTCATCACTGAAAAGTTCCAACCCAATGTAC
AACCTGTTCTACCCGTTGTAATCGTGCCCAAGAACGTAACCCCAGAACGC
GTAAATGTGTCCATTGTCGACACACCTGGAGACCCCCTACAAGTTGAAAA
GGTAGATGAAAACCTCAAATCAGCAGACGTAATCGTTCTTGTCTACGATG
TCAACAACGAATTATCCACCAGACGAGTGTCCTCACATTGGTTGCCCAAG
TTTCGAGCTTCCCGACTCAACGTTCCTGTCATTCTTGTCGGAAATAAGAT
TGATCTGAGGGGCGGTATAGCAGATCCCACCGCCGCAGCCAAGATGGAGG
AATTCATCAAGCCCATCATGGACGATTTCAGAGAGGTTGATGTTTGCATA
GAATGCTCGGCGAAAACTGTGTCAAACATTTCAGAGGTGTTTTATTTCGC
CCAGAAAGCTGTGCTCTATCCCACGGGCCAGGTGTACGACGTTGACAAGC
ACTCTTTGAAGCCCGATGCCAACACCGCCTTACGTCGAATATTCAATCTT
TGTGACAAGGATGGCGATGGCGGACTCAACGACAAGGAACTGAACGATTT
TCAGTATCACTGCTTCAATGTGTATCTGAAAGAAGAAGAATTAGATGGCG
TGAAGAAAGTTGTCAGAGAAAGCTGCCCACAAAGAGGAATCAATTCGGAT
GGATCGCTTTCTGAGGAGGGCTTTATCTTTCTGCACACCCTGTTTGTACA
GAAAGGAAGGCTAGAAACCACGTGGATTGTTCTCCGCAAGTTCGGGTATG
ACGACTACATGCGATTACAATTAGACGAGTCTGAAATTCCGCCGTGCAAC
GACGATCAAACCATCGAGTTAAGTGCGGAGGGAAAGAGCTTCCTTGGCAA
TTTGTTCGCAGCGGCTGATTCAGATGCCGACGGAATGCTGTCGCCCAATG
AGCTTCGCAAACTATTTGCTGCATGCCCTGATGGACCGTTTGCTGTGAAA
AAGAAGGTTTTGGGCGACAGATTGACGAACAAAAGTGACGAAACTGGAAA
GGAGGGCTACATGACGCTAGAGGCATTTATGGCGCGATGGACCATGTTTC
TGGTGGACAGTGTGGCAGATTGCTTGCTCAGTTTCAAGTACCTCGGGTAT
AACGATGAGAAGAGTGCGCTCAAGGTGACGAAGGGAAAAAGACGGGACCG
ATATAATCGTGCTGTCAGCAAGGATGTTATTAGCGTTTCTGTGCTTGGGA
GGGACGGCAGTTTGAAGACGGACATAGTGCGCGGTCTAGTGGGAATGGGT
GGCAATGGTCTGGACAGTGGTAATGCAATGTCCTGCGCAGACGTGTCATA
CATGGAACGGGATCGAAACGACGTGCCGACTGAGATTAGCAAAACGGTAG
TGCTACGCCAGATACCTGAAGAAAGCATGAGCTCGTATTTTGCTTCAAGA
CGTGAGCTGGAGAGCACTGATGTGATGTGCATTGTGTTCAATGGCGGTGA
TGAGGACTCTCTGGAGAAGGCGCGATTGATCTGGCAGGCGGTGGATGCGA
AAAAGCCCGCGATCAAGATGCCGTTCGTGCTGGTAGCGTGTGTGACGCAG
GAAATGATAGCGAACGGGAGTGAGGTGCTGGATCGGGCGGATAAAATGTG
CGTGGAACGCGATCTGCCTACGGCGACGCGTGTGTCGGTGGAAGAGGGCG
AGTACGGATCGCTGTACGCGGACTTGCTGGGGGTGGCGCTGCACCCGGAG
GTGATCTGCGAGGACTACTACGAGGGGGTGTCAGACAGACGCTCGTCGCT
GGCGACGGCGGCGAAATGGACGGCTGTGGCAGTGGCGGGGGGCGTTGTAA
TATACGGGGCAAAACGAGCTTATGACTACTACACGACGAAGACGTCGTCG
TGA
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