Gchil2904.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2904.t1
Unique NameGchil2904.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length424
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:115908..117179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2904Gchil2904Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 115908..117179 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2904.t1.stop1Gchil2904.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 115908..115910 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2904.t1.CDS1Gchil2904.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 115908..117179 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2904.t1.exon1Gchil2904.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 115908..117179 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2904.t1.start1Gchil2904.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 117177..117179 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2904.t1Gchil2904.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 115908..117179 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2904.t1 ID=Gchil2904.t1|Name=Gchil2904.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=424bp
MVRPTRYRRHRIPVGSRKCYDRFATGWTEFAKEAVNLRFQGTVPLIKVED
PDISPGLSYATPKQTTEVIENHDMETNENSSLALSVMLYNTNEEWKEGDL
VDVRTCATGIDRLTRVQVTRQLLMVYNEDLQSIAKGYTRTITDNKGYCYK
RGQRNSIFVACHSALISEGMVVCCRCVYNSLERNVSVNEMDVRTQIALKS
VITKRSWYSNKDTVIRTSLLYILFFLSTVASSVLIHVGQYEVAVSVLISG
LTSWYYLLTWVAGNDTGVTYALTFRGSAECVRSHINMSLGNHGKPIMDPG
SQGKHDHLVGTYIVQDKKIEKSIIRFVSAAMCTAKMREVIKPANSCALGS
NMGEKTVWDIVMTSKRIRSLGCLLTNKFYVVHTASGLKAFEVTSVSTTAR
HTNWKEIGEEMVGIIELNHVILG*
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spliced messenger RNA

>Gchil2904.t1 ID=Gchil2904.t1|Name=Gchil2904.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at tig00000106_pilon:115908..117179- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTAGACCAACACGGTACAGACGGCACCGAATTCCAGTTGGTTCACG
AAAGTGTTACGATCGATTTGCAACAGGCTGGACAGAATTCGCCAAAGAGG
CGGTAAATTTGAGGTTCCAGGGAACCGTTCCTCTTATCAAAGTCGAAGAT
CCCGATATTTCCCCCGGCCTCAGTTACGCGACTCCAAAACAAACCACCGA
AGTTATTGAAAACCATGACATGGAAACGAATGAGAATTCATCACTCGCCT
TATCAGTTATGTTATACAACACAAACGAAGAGTGGAAAGAAGGGGACTTG
GTGGACGTAAGAACGTGTGCAACCGGTATTGACAGGTTAACGAGAGTACA
AGTGACACGGCAACTGCTGATGGTGTACAACGAGGACCTGCAAAGCATCG
CCAAGGGCTATACGAGAACAATAACTGATAACAAGGGGTACTGTTACAAG
AGGGGGCAACGGAATAGCATCTTCGTTGCATGCCATTCAGCTCTAATATC
TGAGGGTATGGTGGTCTGTTGCCGATGTGTGTACAACTCCTTAGAGAGAA
ATGTAAGTGTTAATGAGATGGATGTCCGAACACAGATTGCTCTGAAAAGC
GTGATCACCAAACGAAGTTGGTATTCCAACAAAGATACGGTCATCAGAAC
TTCACTGTTGTACATTCTTTTCTTCTTGTCTACTGTTGCGTCAAGCGTAC
TGATACATGTGGGACAATACGAAGTTGCCGTGTCTGTGTTAATCTCCGGG
CTGACTTCTTGGTATTATCTGCTGACATGGGTTGCTGGAAACGATACCGG
AGTGACATATGCCCTGACCTTTCGTGGTTCGGCAGAGTGTGTCCGCAGTC
ACATAAACATGTCTCTCGGAAATCATGGCAAACCGATTATGGATCCGGGA
TCTCAGGGAAAACATGACCATTTAGTAGGCACCTATATCGTCCAAGACAA
GAAAATAGAAAAGTCAATAATAAGGTTTGTCAGTGCAGCTATGTGCACGG
CCAAGATGAGGGAAGTGATCAAACCAGCGAACTCATGTGCTCTGGGAAGC
AACATGGGTGAGAAGACTGTTTGGGATATTGTGATGACGAGTAAACGTAT
TCGCAGTCTTGGCTGTTTACTAACAAACAAGTTTTACGTCGTACACACCG
CATCGGGCCTAAAAGCGTTTGAAGTCACGAGTGTGTCAACTACTGCTAGA
CACACAAATTGGAAGGAGATAGGCGAAGAAATGGTAGGAATCATTGAGCT
GAATCACGTCATCCTGGGATAA
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protein sequence of Gchil2904.t1

>Gchil2904.t1 ID=Gchil2904.t1|Name=Gchil2904.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=424bp
MVRPTRYRRHRIPVGSRKCYDRFATGWTEFAKEAVNLRFQGTVPLIKVED
PDISPGLSYATPKQTTEVIENHDMETNENSSLALSVMLYNTNEEWKEGDL
VDVRTCATGIDRLTRVQVTRQLLMVYNEDLQSIAKGYTRTITDNKGYCYK
RGQRNSIFVACHSALISEGMVVCCRCVYNSLERNVSVNEMDVRTQIALKS
VITKRSWYSNKDTVIRTSLLYILFFLSTVASSVLIHVGQYEVAVSVLISG
LTSWYYLLTWVAGNDTGVTYALTFRGSAECVRSHINMSLGNHGKPIMDPG
SQGKHDHLVGTYIVQDKKIEKSIIRFVSAAMCTAKMREVIKPANSCALGS
NMGEKTVWDIVMTSKRIRSLGCLLTNKFYVVHTASGLKAFEVTSVSTTAR
HTNWKEIGEEMVGIIELNHVILG*
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mRNA from alignment at tig00000106_pilon:115908..117179-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2904.t1 ID=Gchil2904.t1|Name=Gchil2904.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at tig00000106_pilon:115908..117179- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTAGACCAACACGGTACAGACGGCACCGAATTCCAGTTGGTTCACG
AAAGTGTTACGATCGATTTGCAACAGGCTGGACAGAATTCGCCAAAGAGG
CGGTAAATTTGAGGTTCCAGGGAACCGTTCCTCTTATCAAAGTCGAAGAT
CCCGATATTTCCCCCGGCCTCAGTTACGCGACTCCAAAACAAACCACCGA
AGTTATTGAAAACCATGACATGGAAACGAATGAGAATTCATCACTCGCCT
TATCAGTTATGTTATACAACACAAACGAAGAGTGGAAAGAAGGGGACTTG
GTGGACGTAAGAACGTGTGCAACCGGTATTGACAGGTTAACGAGAGTACA
AGTGACACGGCAACTGCTGATGGTGTACAACGAGGACCTGCAAAGCATCG
CCAAGGGCTATACGAGAACAATAACTGATAACAAGGGGTACTGTTACAAG
AGGGGGCAACGGAATAGCATCTTCGTTGCATGCCATTCAGCTCTAATATC
TGAGGGTATGGTGGTCTGTTGCCGATGTGTGTACAACTCCTTAGAGAGAA
ATGTAAGTGTTAATGAGATGGATGTCCGAACACAGATTGCTCTGAAAAGC
GTGATCACCAAACGAAGTTGGTATTCCAACAAAGATACGGTCATCAGAAC
TTCACTGTTGTACATTCTTTTCTTCTTGTCTACTGTTGCGTCAAGCGTAC
TGATACATGTGGGACAATACGAAGTTGCCGTGTCTGTGTTAATCTCCGGG
CTGACTTCTTGGTATTATCTGCTGACATGGGTTGCTGGAAACGATACCGG
AGTGACATATGCCCTGACCTTTCGTGGTTCGGCAGAGTGTGTCCGCAGTC
ACATAAACATGTCTCTCGGAAATCATGGCAAACCGATTATGGATCCGGGA
TCTCAGGGAAAACATGACCATTTAGTAGGCACCTATATCGTCCAAGACAA
GAAAATAGAAAAGTCAATAATAAGGTTTGTCAGTGCAGCTATGTGCACGG
CCAAGATGAGGGAAGTGATCAAACCAGCGAACTCATGTGCTCTGGGAAGC
AACATGGGTGAGAAGACTGTTTGGGATATTGTGATGACGAGTAAACGTAT
TCGCAGTCTTGGCTGTTTACTAACAAACAAGTTTTACGTCGTACACACCG
CATCGGGCCTAAAAGCGTTTGAAGTCACGAGTGTGTCAACTACTGCTAGA
CACACAAATTGGAAGGAGATAGGCGAAGAAATGGTAGGAATCATTGAGCT
GAATCACGTCATCCTGGGATAA
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Coding sequence (CDS) from alignment at tig00000106_pilon:115908..117179-

>Gchil2904.t1 ID=Gchil2904.t1|Name=Gchil2904.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1272bp|location=Sequence derived from alignment at tig00000106_pilon:115908..117179- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTAGACCAACACGGTACAGACGGCACCGAATTCCAGTTGGTTCACG
AAAGTGTTACGATCGATTTGCAACAGGCTGGACAGAATTCGCCAAAGAGG
CGGTAAATTTGAGGTTCCAGGGAACCGTTCCTCTTATCAAAGTCGAAGAT
CCCGATATTTCCCCCGGCCTCAGTTACGCGACTCCAAAACAAACCACCGA
AGTTATTGAAAACCATGACATGGAAACGAATGAGAATTCATCACTCGCCT
TATCAGTTATGTTATACAACACAAACGAAGAGTGGAAAGAAGGGGACTTG
GTGGACGTAAGAACGTGTGCAACCGGTATTGACAGGTTAACGAGAGTACA
AGTGACACGGCAACTGCTGATGGTGTACAACGAGGACCTGCAAAGCATCG
CCAAGGGCTATACGAGAACAATAACTGATAACAAGGGGTACTGTTACAAG
AGGGGGCAACGGAATAGCATCTTCGTTGCATGCCATTCAGCTCTAATATC
TGAGGGTATGGTGGTCTGTTGCCGATGTGTGTACAACTCCTTAGAGAGAA
ATGTAAGTGTTAATGAGATGGATGTCCGAACACAGATTGCTCTGAAAAGC
GTGATCACCAAACGAAGTTGGTATTCCAACAAAGATACGGTCATCAGAAC
TTCACTGTTGTACATTCTTTTCTTCTTGTCTACTGTTGCGTCAAGCGTAC
TGATACATGTGGGACAATACGAAGTTGCCGTGTCTGTGTTAATCTCCGGG
CTGACTTCTTGGTATTATCTGCTGACATGGGTTGCTGGAAACGATACCGG
AGTGACATATGCCCTGACCTTTCGTGGTTCGGCAGAGTGTGTCCGCAGTC
ACATAAACATGTCTCTCGGAAATCATGGCAAACCGATTATGGATCCGGGA
TCTCAGGGAAAACATGACCATTTAGTAGGCACCTATATCGTCCAAGACAA
GAAAATAGAAAAGTCAATAATAAGGTTTGTCAGTGCAGCTATGTGCACGG
CCAAGATGAGGGAAGTGATCAAACCAGCGAACTCATGTGCTCTGGGAAGC
AACATGGGTGAGAAGACTGTTTGGGATATTGTGATGACGAGTAAACGTAT
TCGCAGTCTTGGCTGTTTACTAACAAACAAGTTTTACGTCGTACACACCG
CATCGGGCCTAAAAGCGTTTGAAGTCACGAGTGTGTCAACTACTGCTAGA
CACACAAATTGGAAGGAGATAGGCGAAGAAATGGTAGGAATCATTGAGCT
GAATCACGTCATCCTGGGATAA
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