Gchil3044.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3044.t1
Unique NameGchil3044.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1324920..1325780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5811.TGME49_078990
PFAMsMito_carr
Max annot lvl5794|Apicomplexa
KEGG koko:K15102
KEGG TC2.A.29.4
Evalue2.52e-56
EggNOG OGsKOG0767@1|root,KOG0767@2759|Eukaryota,3Y9WV@5794|Apicomplexa,3YIT5@5796|Coccidia,3YQMC@5809|Sarcocystidae
DescriptionBelongs to the mitochondrial carrier (TC 2.A.29) family
COG categoryC
BRITEko00000,ko02000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3044Gchil3044Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1324920..1325780 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3044.t1.stop1Gchil3044.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1324920..1324922 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3044.t1.CDS1Gchil3044.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1324920..1325780 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3044.t1.exon1Gchil3044.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1324920..1325780 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3044.t1.start1Gchil3044.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1325778..1325780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3044.t1Gchil3044.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1324920..1325780 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3044.t1 ID=Gchil3044.t1|Name=Gchil3044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=287bp
MASVLPQALLLQLDVIKCNMQTNANKYKSVSSTYHSLLATGGNKTFRRGF
VPTLIGYSLHGFVKFPMFDWFKDLYGRRLGVKMEEKHKEAIRWLSVASAE
FIAVIFLCPFAMVKLKVETSAPGSWPTSFVPAMVKMYRNRAQTGFPFRPI
GAMWLRQIPLAVTQLYLFDLIRSRLSGLVEPEVRYGKYGLETELGIMILS
GYGVGLVSTPLSQPADYILSRFTLPRNRGKSGLMIIAEDGLKKAVMRGLG
PRFAMVGLATGLHFFTFEAAFRLMHLSTANVSKPLQ*
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spliced messenger RNA

>Gchil3044.t1 ID=Gchil3044.t1|Name=Gchil3044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00000106_pilon:1324920..1325780- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAGTGTATTACCCCAAGCTTTATTGCTACAATTGGATGTCATCAA
ATGCAATATGCAAACAAATGCAAACAAGTATAAAAGCGTATCGTCCACGT
ACCATTCGTTGCTTGCCACGGGCGGCAATAAAACTTTTCGAAGAGGATTC
GTTCCGACACTCATTGGATACTCTCTGCACGGGTTTGTGAAGTTTCCGAT
GTTTGATTGGTTTAAAGACTTGTACGGTAGACGCCTTGGTGTGAAAATGG
AAGAAAAGCATAAGGAAGCTATAAGGTGGTTGAGTGTGGCCAGTGCAGAG
TTCATTGCCGTGATATTTCTATGTCCTTTCGCAATGGTAAAGCTCAAAGT
TGAGACTAGCGCGCCTGGTTCATGGCCAACAAGTTTTGTTCCCGCGATGG
TGAAAATGTACAGAAACCGCGCTCAGACAGGATTCCCTTTTCGTCCAATT
GGTGCTATGTGGCTGCGGCAAATCCCGCTTGCCGTGACTCAGCTGTATCT
TTTCGACTTAATCAGATCTAGGCTTTCAGGACTGGTAGAACCAGAAGTGC
GGTACGGAAAGTATGGGTTGGAGACAGAGTTAGGTATTATGATACTTAGT
GGGTATGGGGTCGGTTTGGTATCTACTCCTCTATCTCAACCAGCCGACTA
CATTCTTTCACGATTTACTTTGCCTAGAAATCGAGGAAAGTCTGGCTTGA
TGATCATAGCGGAAGATGGGCTAAAAAAGGCGGTTATGCGTGGATTGGGA
CCTCGATTTGCTATGGTGGGTTTGGCGACGGGGTTGCATTTCTTTACATT
TGAAGCGGCGTTCCGTTTGATGCATCTATCTACAGCCAACGTATCGAAAC
CGCTACAATAA
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protein sequence of Gchil3044.t1

>Gchil3044.t1 ID=Gchil3044.t1|Name=Gchil3044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=287bp
MASVLPQALLLQLDVIKCNMQTNANKYKSVSSTYHSLLATGGNKTFRRGF
VPTLIGYSLHGFVKFPMFDWFKDLYGRRLGVKMEEKHKEAIRWLSVASAE
FIAVIFLCPFAMVKLKVETSAPGSWPTSFVPAMVKMYRNRAQTGFPFRPI
GAMWLRQIPLAVTQLYLFDLIRSRLSGLVEPEVRYGKYGLETELGIMILS
GYGVGLVSTPLSQPADYILSRFTLPRNRGKSGLMIIAEDGLKKAVMRGLG
PRFAMVGLATGLHFFTFEAAFRLMHLSTANVSKPLQ*
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mRNA from alignment at tig00000106_pilon:1324920..1325780-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3044.t1 ID=Gchil3044.t1|Name=Gchil3044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00000106_pilon:1324920..1325780- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCAGTGTATTACCCCAAGCTTTATTGCTACAATTGGATGTCATCAA
ATGCAATATGCAAACAAATGCAAACAAGTATAAAAGCGTATCGTCCACGT
ACCATTCGTTGCTTGCCACGGGCGGCAATAAAACTTTTCGAAGAGGATTC
GTTCCGACACTCATTGGATACTCTCTGCACGGGTTTGTGAAGTTTCCGAT
GTTTGATTGGTTTAAAGACTTGTACGGTAGACGCCTTGGTGTGAAAATGG
AAGAAAAGCATAAGGAAGCTATAAGGTGGTTGAGTGTGGCCAGTGCAGAG
TTCATTGCCGTGATATTTCTATGTCCTTTCGCAATGGTAAAGCTCAAAGT
TGAGACTAGCGCGCCTGGTTCATGGCCAACAAGTTTTGTTCCCGCGATGG
TGAAAATGTACAGAAACCGCGCTCAGACAGGATTCCCTTTTCGTCCAATT
GGTGCTATGTGGCTGCGGCAAATCCCGCTTGCCGTGACTCAGCTGTATCT
TTTCGACTTAATCAGATCTAGGCTTTCAGGACTGGTAGAACCAGAAGTGC
GGTACGGAAAGTATGGGTTGGAGACAGAGTTAGGTATTATGATACTTAGT
GGGTATGGGGTCGGTTTGGTATCTACTCCTCTATCTCAACCAGCCGACTA
CATTCTTTCACGATTTACTTTGCCTAGAAATCGAGGAAAGTCTGGCTTGA
TGATCATAGCGGAAGATGGGCTAAAAAAGGCGGTTATGCGTGGATTGGGA
CCTCGATTTGCTATGGTGGGTTTGGCGACGGGGTTGCATTTCTTTACATT
TGAAGCGGCGTTCCGTTTGATGCATCTATCTACAGCCAACGTATCGAAAC
CGCTACAATAA
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Coding sequence (CDS) from alignment at tig00000106_pilon:1324920..1325780-

>Gchil3044.t1 ID=Gchil3044.t1|Name=Gchil3044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=861bp|location=Sequence derived from alignment at tig00000106_pilon:1324920..1325780- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCAGTGTATTACCCCAAGCTTTATTGCTACAATTGGATGTCATCAA
ATGCAATATGCAAACAAATGCAAACAAGTATAAAAGCGTATCGTCCACGT
ACCATTCGTTGCTTGCCACGGGCGGCAATAAAACTTTTCGAAGAGGATTC
GTTCCGACACTCATTGGATACTCTCTGCACGGGTTTGTGAAGTTTCCGAT
GTTTGATTGGTTTAAAGACTTGTACGGTAGACGCCTTGGTGTGAAAATGG
AAGAAAAGCATAAGGAAGCTATAAGGTGGTTGAGTGTGGCCAGTGCAGAG
TTCATTGCCGTGATATTTCTATGTCCTTTCGCAATGGTAAAGCTCAAAGT
TGAGACTAGCGCGCCTGGTTCATGGCCAACAAGTTTTGTTCCCGCGATGG
TGAAAATGTACAGAAACCGCGCTCAGACAGGATTCCCTTTTCGTCCAATT
GGTGCTATGTGGCTGCGGCAAATCCCGCTTGCCGTGACTCAGCTGTATCT
TTTCGACTTAATCAGATCTAGGCTTTCAGGACTGGTAGAACCAGAAGTGC
GGTACGGAAAGTATGGGTTGGAGACAGAGTTAGGTATTATGATACTTAGT
GGGTATGGGGTCGGTTTGGTATCTACTCCTCTATCTCAACCAGCCGACTA
CATTCTTTCACGATTTACTTTGCCTAGAAATCGAGGAAAGTCTGGCTTGA
TGATCATAGCGGAAGATGGGCTAAAAAAGGCGGTTATGCGTGGATTGGGA
CCTCGATTTGCTATGGTGGGTTTGGCGACGGGGTTGCATTTCTTTACATT
TGAAGCGGCGTTCCGTTTGATGCATCTATCTACAGCCAACGTATCGAAAC
CGCTACAATAA
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