Gchil2992.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2992.t1
Unique NameGchil2992.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length123
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:710636..711107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2992Gchil2992Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 710636..711107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2992.t1Gchil2992.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 710636..711107 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2992.t1.start1Gchil2992.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 710636..710638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2992.t1.CDS1Gchil2992.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 710636..710908 +
Gchil2992.t1.CDS2Gchil2992.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 711012..711107 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2992.t1.exon1Gchil2992.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 710636..710908 +
Gchil2992.t1.exon2Gchil2992.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 711012..711107 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2992.t1.intron1Gchil2992.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 710909..711011 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2992.t1.stop1Gchil2992.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 711105..711107 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2992.t1 ID=Gchil2992.t1|Name=Gchil2992.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=123bp
MFAFVGFCPSPFRASAFTGAQCKGFRRLNRTYPRRSTSAVVVAVTQPITS
TALLLTENITRRIFLGGISIVVSGILGVVFVAYFVARNYDEMEAEFQNRD
GAVERLKALEELKAARKREKQS*
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spliced messenger RNA

>Gchil2992.t1 ID=Gchil2992.t1|Name=Gchil2992.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=369bp|location=Sequence derived from alignment at tig00000106_pilon:710636..711107+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCTTTTGTCGGTTTCTGTCCTTCTCCGTTTCGTGCATCGGCTTT
CACAGGAGCCCAATGCAAGGGTTTCCGAAGATTGAATAGAACTTATCCTC
GACGATCCACGTCCGCAGTGGTTGTGGCTGTCACGCAACCTATTACTTCT
ACAGCGCTCTTGCTGACGGAAAACATTACTCGCAGGATCTTTCTCGGCGG
AATAAGTATTGTGGTGTCGGGTATTTTGGGCGTGGTTTTTGTCGCATACT
TTGTTGCGAGAAATTATGACGAAATGGAAGCAGAATTTCAGAACCGTGAC
GGAGCTGTGGAACGATTAAAAGCTCTAGAGGAGCTTAAAGCTGCGAGGAA
ACGCGAGAAACAGTCATGA
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protein sequence of Gchil2992.t1

>Gchil2992.t1 ID=Gchil2992.t1|Name=Gchil2992.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=123bp
MFAFVGFCPSPFRASAFTGAQCKGFRRLNRTYPRRSTSAVVVAVTQPITS
TALLLTENITRRIFLGGISIVVSGILGVVFVAYFVARNYDEMEAEFQNRD
GAVERLKALEELKAARKREKQS*
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mRNA from alignment at tig00000106_pilon:710636..711107+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2992.t1 ID=Gchil2992.t1|Name=Gchil2992.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=472bp|location=Sequence derived from alignment at tig00000106_pilon:710636..711107+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCGCTTTTGTCGGTTTCTGTCCTTCTCCGTTTCGTGCATCGGCTTT
CACAGGAGCCCAATGCAAGGGTTTCCGAAGATTGAATAGAACTTATCCTC
GACGATCCACGTCCGCAGTGGTTGTGGCTGTCACGCAACCTATTACTTCT
ACAGCGCTCTTGCTGACGGAAAACATTACTCGCAGGATCTTTCTCGGCGG
AATAAGTATTGTGGTGTCGGGTATTTTGGGCGTGGTTTTTGTCGCATACT
TTGTTGCGAGAAATTATGACGAAGTACGTTGATTAAAAAAGCGTTCTCGA
CCTACTTGAAGAACTCACTAACAGTTTCCTCTTATCATGTGTGTCTGTAT
CACTGTTTTTGCTGTAATGGACATAGATGGAAGCAGAATTTCAGAACCGT
GACGGAGCTGTGGAACGATTAAAAGCTCTAGAGGAGCTTAAAGCTGCGAG
GAAACGCGAGAAACAGTCATGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:710636..711107+

>Gchil2992.t1 ID=Gchil2992.t1|Name=Gchil2992.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=369bp|location=Sequence derived from alignment at tig00000106_pilon:710636..711107+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCGCTTTTGTCGGTTTCTGTCCTTCTCCGTTTCGTGCATCGGCTTT
CACAGGAGCCCAATGCAAGGGTTTCCGAAGATTGAATAGAACTTATCCTC
GACGATCCACGTCCGCAGTGGTTGTGGCTGTCACGCAACCTATTACTTCT
ACAGCGCTCTTGCTGACGGAAAACATTACTCGCAGGATCTTTCTCGGCGG
AATAAGTATTGTGGTGTCGGGTATTTTGGGCGTGGTTTTTGTCGCATACT
TTGTTGCGAGAAATTATGACGAAATGGAAGCAGAATTTCAGAACCGTGAC
GGAGCTGTGGAACGATTAAAAGCTCTAGAGGAGCTTAAAGCTGCGAGGAA
ACGCGAGAAACAGTCATGA
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