Gchil2914.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2914.t1
Unique NameGchil2914.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length597
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:199054..200844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_50588
Preferred nameNIR
PFAMsNIR_SIR,NIR_SIR_ferr
Max annot lvl2759|Eukaryota
KEGG rclassRC00176
KEGG koko:K00366
KEGG ReactionR00790
KEGG Pathwayko00910,ko01120,map00910,map01120
KEGG ModuleM00531
GOsGO:0001101,GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0010035,GO:0010167,GO:0016020,GO:0016491,GO:0016661,GO:0016662,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048046,GO:0050421,GO:0050896,GO:0055114,GO:0098809,GO:1901698,GO:1901700
Evalue5.97e-211
EggNOG OGsCOG0155@1|root,KOG0560@2759|Eukaryota
EC1.7.7.1
Descriptionsulfite reductase (ferredoxin) activity
COG categoryP
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2914Gchil2914Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 199054..200844 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2914.t1.stop1Gchil2914.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 199054..199056 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2914.t1.CDS1Gchil2914.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 199054..200844 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2914.t1.exon1Gchil2914.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 199054..200844 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2914.t1.start1Gchil2914.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 200842..200844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2914.t1Gchil2914.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 199054..200844 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2914.t1 ID=Gchil2914.t1|Name=Gchil2914.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=597bp
MSFVAPFAVPCCSPSPSLSSPLPRLAPSRRFLQRHSLDTSLSLVPLRRHV
SCVALRAPEDGEHNLGGDRYLSPDALERAKKGNKFEKLKLEKDGSAMWSE
IHELAALLREGRTSWQDIHVDDIDVRLKWAGLFHRRKRTPGRFMMRLKVP
NGILSSSQLRYFAAVLRPYAEQGCADITTRMNIQLRGITLDDAAAVCDGL
YHHGLTSYMSGMDNVRNMVGSPIAGIDPVELIDTRPLCHQINDMITNNRK
GRPQLTNLPRKFNIAVSGSRDDFAHTHINDIGLVPIPHDQTHQIGFNVVI
GGFFSIKRNEEAISMDVWLPPSQVVRFCETVLLWFRDNGDRKLRQATRLM
YMVDQLGMDAFRAQIQSAMHTELQRAMRGDESYATPVPRRNVLGVHAQKQ
PGLSWVGACVPAGRLHVPDIEALAAVADKYCAGELRLTVEQNVIFPNVTT
DLVPNMLKEPIFEKFAVHPGRITGNLVSCTGAQFCGLALIETKNRAIALA
DELERAVHVPRDVRIHWTGCPNSCGQVQVADIGLMGCPARLDGKAVEGVR
VFVGGLIGEEARLGEEIMKGVPATSEHLVPVLADILVERFGATRRL*
back to top

spliced messenger RNA

>Gchil2914.t1 ID=Gchil2914.t1|Name=Gchil2914.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at tig00000106_pilon:199054..200844- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTTTGTCGCGCCGTTTGCGGTGCCTTGCTGCTCGCCGTCGCCATC
GCTGTCGTCGCCACTGCCGCGTCTCGCCCCGTCGCGTCGCTTCTTGCAGC
GCCACTCGTTGGATACGTCGCTCTCGCTTGTGCCGTTGCGGCGTCACGTT
TCGTGCGTCGCACTGCGTGCGCCCGAGGATGGTGAACACAACCTTGGCGG
CGATCGTTATCTATCACCAGATGCTTTGGAGCGCGCAAAGAAAGGAAATA
AGTTTGAGAAGCTAAAGCTTGAGAAGGACGGCTCTGCTATGTGGTCCGAG
ATCCATGAGCTGGCTGCTTTGCTCAGAGAGGGGCGTACCTCGTGGCAGGA
TATTCATGTGGATGACATTGACGTGCGTCTCAAGTGGGCCGGTCTCTTTC
ACCGCCGCAAGAGGACCCCGGGTCGCTTCATGATGCGACTTAAGGTTCCA
AACGGCATTCTGTCCTCTTCTCAACTGCGTTACTTTGCCGCTGTGCTCCG
CCCTTACGCCGAGCAAGGCTGTGCGGACATCACCACCAGGATGAACATCC
AGCTCCGTGGAATCACTTTGGATGATGCCGCTGCCGTGTGTGACGGGCTC
TACCACCATGGGCTCACCAGCTACATGAGCGGCATGGACAACGTCAGAAA
CATGGTGGGAAGCCCCATCGCAGGTATTGACCCCGTGGAACTCATCGACA
CGCGCCCCCTGTGCCACCAAATCAACGACATGATCACCAACAACCGCAAG
GGCCGTCCACAACTGACCAATCTCCCACGCAAGTTCAACATCGCCGTGTC
GGGTTCGAGGGACGATTTTGCCCACACCCACATCAATGACATTGGTTTGG
TGCCCATCCCGCACGACCAAACGCACCAAATTGGTTTCAACGTCGTCATC
GGTGGCTTTTTCTCCATCAAACGCAACGAAGAGGCCATTTCCATGGACGT
GTGGCTGCCGCCGTCACAAGTGGTGCGGTTTTGCGAAACCGTTCTGCTGT
GGTTTCGAGACAATGGCGATCGAAAGCTTCGTCAAGCCACGCGCCTCATG
TACATGGTGGATCAACTCGGCATGGACGCCTTTCGCGCCCAGATTCAAAG
TGCCATGCACACCGAGCTACAGCGCGCCATGCGTGGCGACGAGTCGTATG
CCACGCCCGTCCCGCGACGAAACGTGCTCGGTGTGCACGCCCAGAAACAA
CCCGGCCTCAGCTGGGTGGGCGCATGCGTGCCGGCCGGCCGACTCCATGT
GCCCGACATCGAGGCGCTCGCCGCCGTCGCCGACAAGTACTGCGCCGGCG
AACTGCGCCTCACCGTGGAGCAGAACGTCATCTTCCCCAACGTCACCACC
GACCTCGTGCCCAACATGCTCAAGGAACCTATCTTTGAAAAGTTCGCCGT
TCATCCGGGACGCATCACAGGCAACTTGGTGTCGTGCACGGGCGCACAAT
TCTGTGGATTGGCGCTCATCGAGACCAAGAATCGCGCCATTGCTCTAGCC
GACGAGCTGGAGCGCGCCGTGCACGTGCCTCGCGACGTGCGCATTCACTG
GACTGGTTGCCCAAACAGCTGTGGACAGGTGCAAGTGGCCGACATCGGGC
TCATGGGCTGCCCCGCCCGCCTGGACGGGAAGGCAGTGGAGGGCGTGCGT
GTGTTTGTGGGCGGTCTCATCGGTGAGGAAGCGCGCCTTGGCGAGGAGAT
CATGAAGGGCGTGCCGGCCACAAGCGAGCACCTCGTGCCCGTGTTGGCGG
ACATTTTGGTTGAGCGCTTCGGCGCTACGCGCAGGCTCTGA
back to top

protein sequence of Gchil2914.t1

>Gchil2914.t1 ID=Gchil2914.t1|Name=Gchil2914.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=597bp
MSFVAPFAVPCCSPSPSLSSPLPRLAPSRRFLQRHSLDTSLSLVPLRRHV
SCVALRAPEDGEHNLGGDRYLSPDALERAKKGNKFEKLKLEKDGSAMWSE
IHELAALLREGRTSWQDIHVDDIDVRLKWAGLFHRRKRTPGRFMMRLKVP
NGILSSSQLRYFAAVLRPYAEQGCADITTRMNIQLRGITLDDAAAVCDGL
YHHGLTSYMSGMDNVRNMVGSPIAGIDPVELIDTRPLCHQINDMITNNRK
GRPQLTNLPRKFNIAVSGSRDDFAHTHINDIGLVPIPHDQTHQIGFNVVI
GGFFSIKRNEEAISMDVWLPPSQVVRFCETVLLWFRDNGDRKLRQATRLM
YMVDQLGMDAFRAQIQSAMHTELQRAMRGDESYATPVPRRNVLGVHAQKQ
PGLSWVGACVPAGRLHVPDIEALAAVADKYCAGELRLTVEQNVIFPNVTT
DLVPNMLKEPIFEKFAVHPGRITGNLVSCTGAQFCGLALIETKNRAIALA
DELERAVHVPRDVRIHWTGCPNSCGQVQVADIGLMGCPARLDGKAVEGVR
VFVGGLIGEEARLGEEIMKGVPATSEHLVPVLADILVERFGATRRL*
back to top

mRNA from alignment at tig00000106_pilon:199054..200844-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2914.t1 ID=Gchil2914.t1|Name=Gchil2914.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at tig00000106_pilon:199054..200844- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTTTGTCGCGCCGTTTGCGGTGCCTTGCTGCTCGCCGTCGCCATC
GCTGTCGTCGCCACTGCCGCGTCTCGCCCCGTCGCGTCGCTTCTTGCAGC
GCCACTCGTTGGATACGTCGCTCTCGCTTGTGCCGTTGCGGCGTCACGTT
TCGTGCGTCGCACTGCGTGCGCCCGAGGATGGTGAACACAACCTTGGCGG
CGATCGTTATCTATCACCAGATGCTTTGGAGCGCGCAAAGAAAGGAAATA
AGTTTGAGAAGCTAAAGCTTGAGAAGGACGGCTCTGCTATGTGGTCCGAG
ATCCATGAGCTGGCTGCTTTGCTCAGAGAGGGGCGTACCTCGTGGCAGGA
TATTCATGTGGATGACATTGACGTGCGTCTCAAGTGGGCCGGTCTCTTTC
ACCGCCGCAAGAGGACCCCGGGTCGCTTCATGATGCGACTTAAGGTTCCA
AACGGCATTCTGTCCTCTTCTCAACTGCGTTACTTTGCCGCTGTGCTCCG
CCCTTACGCCGAGCAAGGCTGTGCGGACATCACCACCAGGATGAACATCC
AGCTCCGTGGAATCACTTTGGATGATGCCGCTGCCGTGTGTGACGGGCTC
TACCACCATGGGCTCACCAGCTACATGAGCGGCATGGACAACGTCAGAAA
CATGGTGGGAAGCCCCATCGCAGGTATTGACCCCGTGGAACTCATCGACA
CGCGCCCCCTGTGCCACCAAATCAACGACATGATCACCAACAACCGCAAG
GGCCGTCCACAACTGACCAATCTCCCACGCAAGTTCAACATCGCCGTGTC
GGGTTCGAGGGACGATTTTGCCCACACCCACATCAATGACATTGGTTTGG
TGCCCATCCCGCACGACCAAACGCACCAAATTGGTTTCAACGTCGTCATC
GGTGGCTTTTTCTCCATCAAACGCAACGAAGAGGCCATTTCCATGGACGT
GTGGCTGCCGCCGTCACAAGTGGTGCGGTTTTGCGAAACCGTTCTGCTGT
GGTTTCGAGACAATGGCGATCGAAAGCTTCGTCAAGCCACGCGCCTCATG
TACATGGTGGATCAACTCGGCATGGACGCCTTTCGCGCCCAGATTCAAAG
TGCCATGCACACCGAGCTACAGCGCGCCATGCGTGGCGACGAGTCGTATG
CCACGCCCGTCCCGCGACGAAACGTGCTCGGTGTGCACGCCCAGAAACAA
CCCGGCCTCAGCTGGGTGGGCGCATGCGTGCCGGCCGGCCGACTCCATGT
GCCCGACATCGAGGCGCTCGCCGCCGTCGCCGACAAGTACTGCGCCGGCG
AACTGCGCCTCACCGTGGAGCAGAACGTCATCTTCCCCAACGTCACCACC
GACCTCGTGCCCAACATGCTCAAGGAACCTATCTTTGAAAAGTTCGCCGT
TCATCCGGGACGCATCACAGGCAACTTGGTGTCGTGCACGGGCGCACAAT
TCTGTGGATTGGCGCTCATCGAGACCAAGAATCGCGCCATTGCTCTAGCC
GACGAGCTGGAGCGCGCCGTGCACGTGCCTCGCGACGTGCGCATTCACTG
GACTGGTTGCCCAAACAGCTGTGGACAGGTGCAAGTGGCCGACATCGGGC
TCATGGGCTGCCCCGCCCGCCTGGACGGGAAGGCAGTGGAGGGCGTGCGT
GTGTTTGTGGGCGGTCTCATCGGTGAGGAAGCGCGCCTTGGCGAGGAGAT
CATGAAGGGCGTGCCGGCCACAAGCGAGCACCTCGTGCCCGTGTTGGCGG
ACATTTTGGTTGAGCGCTTCGGCGCTACGCGCAGGCTCTGA
back to top

Coding sequence (CDS) from alignment at tig00000106_pilon:199054..200844-

>Gchil2914.t1 ID=Gchil2914.t1|Name=Gchil2914.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1791bp|location=Sequence derived from alignment at tig00000106_pilon:199054..200844- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTTTGTCGCGCCGTTTGCGGTGCCTTGCTGCTCGCCGTCGCCATC
GCTGTCGTCGCCACTGCCGCGTCTCGCCCCGTCGCGTCGCTTCTTGCAGC
GCCACTCGTTGGATACGTCGCTCTCGCTTGTGCCGTTGCGGCGTCACGTT
TCGTGCGTCGCACTGCGTGCGCCCGAGGATGGTGAACACAACCTTGGCGG
CGATCGTTATCTATCACCAGATGCTTTGGAGCGCGCAAAGAAAGGAAATA
AGTTTGAGAAGCTAAAGCTTGAGAAGGACGGCTCTGCTATGTGGTCCGAG
ATCCATGAGCTGGCTGCTTTGCTCAGAGAGGGGCGTACCTCGTGGCAGGA
TATTCATGTGGATGACATTGACGTGCGTCTCAAGTGGGCCGGTCTCTTTC
ACCGCCGCAAGAGGACCCCGGGTCGCTTCATGATGCGACTTAAGGTTCCA
AACGGCATTCTGTCCTCTTCTCAACTGCGTTACTTTGCCGCTGTGCTCCG
CCCTTACGCCGAGCAAGGCTGTGCGGACATCACCACCAGGATGAACATCC
AGCTCCGTGGAATCACTTTGGATGATGCCGCTGCCGTGTGTGACGGGCTC
TACCACCATGGGCTCACCAGCTACATGAGCGGCATGGACAACGTCAGAAA
CATGGTGGGAAGCCCCATCGCAGGTATTGACCCCGTGGAACTCATCGACA
CGCGCCCCCTGTGCCACCAAATCAACGACATGATCACCAACAACCGCAAG
GGCCGTCCACAACTGACCAATCTCCCACGCAAGTTCAACATCGCCGTGTC
GGGTTCGAGGGACGATTTTGCCCACACCCACATCAATGACATTGGTTTGG
TGCCCATCCCGCACGACCAAACGCACCAAATTGGTTTCAACGTCGTCATC
GGTGGCTTTTTCTCCATCAAACGCAACGAAGAGGCCATTTCCATGGACGT
GTGGCTGCCGCCGTCACAAGTGGTGCGGTTTTGCGAAACCGTTCTGCTGT
GGTTTCGAGACAATGGCGATCGAAAGCTTCGTCAAGCCACGCGCCTCATG
TACATGGTGGATCAACTCGGCATGGACGCCTTTCGCGCCCAGATTCAAAG
TGCCATGCACACCGAGCTACAGCGCGCCATGCGTGGCGACGAGTCGTATG
CCACGCCCGTCCCGCGACGAAACGTGCTCGGTGTGCACGCCCAGAAACAA
CCCGGCCTCAGCTGGGTGGGCGCATGCGTGCCGGCCGGCCGACTCCATGT
GCCCGACATCGAGGCGCTCGCCGCCGTCGCCGACAAGTACTGCGCCGGCG
AACTGCGCCTCACCGTGGAGCAGAACGTCATCTTCCCCAACGTCACCACC
GACCTCGTGCCCAACATGCTCAAGGAACCTATCTTTGAAAAGTTCGCCGT
TCATCCGGGACGCATCACAGGCAACTTGGTGTCGTGCACGGGCGCACAAT
TCTGTGGATTGGCGCTCATCGAGACCAAGAATCGCGCCATTGCTCTAGCC
GACGAGCTGGAGCGCGCCGTGCACGTGCCTCGCGACGTGCGCATTCACTG
GACTGGTTGCCCAAACAGCTGTGGACAGGTGCAAGTGGCCGACATCGGGC
TCATGGGCTGCCCCGCCCGCCTGGACGGGAAGGCAGTGGAGGGCGTGCGT
GTGTTTGTGGGCGGTCTCATCGGTGAGGAAGCGCGCCTTGGCGAGGAGAT
CATGAAGGGCGTGCCGGCCACAAGCGAGCACCTCGTGCCCGTGTTGGCGG
ACATTTTGGTTGAGCGCTTCGGCGCTACGCGCAGGCTCTGA
back to top