Gchil2927.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2927.t1
Unique NameGchil2927.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length183
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:315362..315910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7209.EFO25175.1
Preferred nameRPL11
PFAMsRibosomal_L5,Ribosomal_L5_C
Max annot lvl33208|Metazoa
KEGG koko:K02868,ko:K10523
KEGG Pathwayko03010,ko04340,ko04341,map03010,map04340,map04341
KEGG ModuleM00177,M00384
GOsGO:0000027,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0004857,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0023051,GO:0023056,GO:0030162,GO:0030234,GO:0030867,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031625,GO:0031647,GO:0031974,GO:0031981,GO:0031984,GO:0032092,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042176,GO:0042177,GO:0042254,GO:0042255,GO:0042273,GO:0042788,GO:0042886,GO:0042975,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043433,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044389,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045861,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0051090,GO:0051098,GO:0051099,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0051641,GO:0051649,GO:0055105,GO:0055106,GO:0060255,GO:0061136,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098772,GO:0098827,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901796,GO:1901798,GO:1901799,GO:1902253,GO:1902255,GO:1902531,GO:1902533,GO:1903050,GO:1903051,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1903506,GO:1904666,GO:1904667,GO:1990904,GO:1990948,GO:2000058,GO:2000059,GO:2000112,GO:2000434,GO:2000435,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Evalue3.89e-83
EggNOG OGsCOG0094@1|root,KOG0397@2759|Eukaryota,38BMT@33154|Opisthokonta,3BDSE@33208|Metazoa,3CXGD@33213|Bilateria,40CDW@6231|Nematoda,1KUJX@119089|Chromadorea
DescriptionComponent of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl- transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through a tunnel in the LSU and interact with protein factors that function in enzymatic processing, targeting, and the membrane insertion of nascent chains at the exit of the ribosomal tunnel
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2927Gchil2927Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 315362..315910 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2927.t1.start1Gchil2927.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 315362..315364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2927.t1.CDS1Gchil2927.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 315362..315910 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2927.t1.exon1Gchil2927.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 315362..315910 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2927.t1.stop1Gchil2927.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 315908..315910 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2927.t1Gchil2927.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 315362..315910 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2927.t1 ID=Gchil2927.t1|Name=Gchil2927.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=183bp
MVSGQKNAANPMRELKVHKLVLNICVGESGDRLTRAARVLEQLTGQQPVY
SKSRLTIRTFGIRRNEKISTHVTIRGPKADEILERALKVKEYELRESNFS
DGGAATRAAGGFGFGINEHIDLGLKYDPTTGIYGMDVYVVLKRAGDRVSK
RRRAPQRIGKLQTVSKDDAIKWFQTKHEGIVL*
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spliced messenger RNA

>Gchil2927.t1 ID=Gchil2927.t1|Name=Gchil2927.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=549bp|location=Sequence derived from alignment at tig00000106_pilon:315362..315910+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTCGGGTCAGAAAAACGCTGCCAACCCTATGCGTGAGCTCAAGGT
ACACAAGCTGGTTCTCAACATTTGCGTCGGGGAATCTGGAGATAGGCTGA
CCAGAGCTGCCCGAGTGCTCGAGCAGCTCACCGGACAGCAACCGGTTTAC
TCTAAGTCCAGGCTTACAATTCGTACTTTTGGAATCCGCCGAAATGAGAA
GATCTCGACACATGTGACTATCCGTGGACCGAAGGCTGATGAGATTTTGG
AACGCGCGCTCAAAGTCAAAGAATACGAGCTCCGTGAGTCTAATTTCAGT
GACGGCGGTGCCGCCACTCGCGCCGCTGGTGGTTTCGGGTTTGGCATCAA
TGAGCACATTGATCTAGGTTTGAAATACGATCCGACTACTGGCATCTACG
GTATGGACGTCTACGTCGTTCTTAAGCGTGCCGGTGATCGTGTCTCAAAG
CGTCGCCGAGCTCCGCAAAGGATTGGAAAGCTCCAGACCGTCTCAAAAGA
TGACGCCATTAAGTGGTTCCAGACCAAGCATGAAGGCATCGTGTTGTAA
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protein sequence of Gchil2927.t1

>Gchil2927.t1 ID=Gchil2927.t1|Name=Gchil2927.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=183bp
MVSGQKNAANPMRELKVHKLVLNICVGESGDRLTRAARVLEQLTGQQPVY
SKSRLTIRTFGIRRNEKISTHVTIRGPKADEILERALKVKEYELRESNFS
DGGAATRAAGGFGFGINEHIDLGLKYDPTTGIYGMDVYVVLKRAGDRVSK
RRRAPQRIGKLQTVSKDDAIKWFQTKHEGIVL*
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mRNA from alignment at tig00000106_pilon:315362..315910+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2927.t1 ID=Gchil2927.t1|Name=Gchil2927.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=549bp|location=Sequence derived from alignment at tig00000106_pilon:315362..315910+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGTCGGGTCAGAAAAACGCTGCCAACCCTATGCGTGAGCTCAAGGT
ACACAAGCTGGTTCTCAACATTTGCGTCGGGGAATCTGGAGATAGGCTGA
CCAGAGCTGCCCGAGTGCTCGAGCAGCTCACCGGACAGCAACCGGTTTAC
TCTAAGTCCAGGCTTACAATTCGTACTTTTGGAATCCGCCGAAATGAGAA
GATCTCGACACATGTGACTATCCGTGGACCGAAGGCTGATGAGATTTTGG
AACGCGCGCTCAAAGTCAAAGAATACGAGCTCCGTGAGTCTAATTTCAGT
GACGGCGGTGCCGCCACTCGCGCCGCTGGTGGTTTCGGGTTTGGCATCAA
TGAGCACATTGATCTAGGTTTGAAATACGATCCGACTACTGGCATCTACG
GTATGGACGTCTACGTCGTTCTTAAGCGTGCCGGTGATCGTGTCTCAAAG
CGTCGCCGAGCTCCGCAAAGGATTGGAAAGCTCCAGACCGTCTCAAAAGA
TGACGCCATTAAGTGGTTCCAGACCAAGCATGAAGGCATCGTGTTGTAA
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Coding sequence (CDS) from alignment at tig00000106_pilon:315362..315910+

>Gchil2927.t1 ID=Gchil2927.t1|Name=Gchil2927.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=549bp|location=Sequence derived from alignment at tig00000106_pilon:315362..315910+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGTCGGGTCAGAAAAACGCTGCCAACCCTATGCGTGAGCTCAAGGT
ACACAAGCTGGTTCTCAACATTTGCGTCGGGGAATCTGGAGATAGGCTGA
CCAGAGCTGCCCGAGTGCTCGAGCAGCTCACCGGACAGCAACCGGTTTAC
TCTAAGTCCAGGCTTACAATTCGTACTTTTGGAATCCGCCGAAATGAGAA
GATCTCGACACATGTGACTATCCGTGGACCGAAGGCTGATGAGATTTTGG
AACGCGCGCTCAAAGTCAAAGAATACGAGCTCCGTGAGTCTAATTTCAGT
GACGGCGGTGCCGCCACTCGCGCCGCTGGTGGTTTCGGGTTTGGCATCAA
TGAGCACATTGATCTAGGTTTGAAATACGATCCGACTACTGGCATCTACG
GTATGGACGTCTACGTCGTTCTTAAGCGTGCCGGTGATCGTGTCTCAAAG
CGTCGCCGAGCTCCGCAAAGGATTGGAAAGCTCCAGACCGTCTCAAAAGA
TGACGCCATTAAGTGGTTCCAGACCAAGCATGAAGGCATCGTGTTGTAA
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