Gchil3058.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil3058.t1
Unique NameGchil3058.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length124
Homology
BLAST of Gchil3058.t1 vs. uniprot
Match: A0A2V3J4D4_9FLOR (Cytochrome c oxidase assembly protein COX20, mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4D4_9FLOR)

HSP 1 Score: 137 bits (344), Expect = 2.590e-39
Identity = 67/110 (60.91%), Postives = 88/110 (80.00%), Query Frame = 0
Query:    5 DRSDVG-DEEQGNYSFLFELWSAPCFRESTMYGIGGGVAIGSMQMLRSKAIMESAETMVKTGCAISLLSWMICRRRYYQEREATYETMEKLKRRQAQAAAARANKHRPQR 113
            D+ +V  D  +   SF+++L SAPCFR ST+YGIGGG AIG+M +LR++++M SAETMVKTGCAISLLSW++CR++YY ERE TY  ME+L++RQA AAA RA + R QR
Sbjct:    3 DKKEVSSDGARSEMSFMYDLTSAPCFRRSTLYGIGGGAAIGAMHLLRTRSVMPSAETMVKTGCAISLLSWVVCRKQYYDEREVTYGAMEQLRKRQAAAAAKRAQQLRTQR 112          
BLAST of Gchil3058.t1 vs. uniprot
Match: A0A1X6NLZ9_PORUM (Cytochrome c oxidase assembly protein COX20, mitochondrial n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NLZ9_PORUM)

HSP 1 Score: 65.1 bits (157), Expect = 1.310e-10
Identity = 29/91 (31.87%), Postives = 53/91 (58.24%), Query Frame = 0
Query:   13 EQGNYSFLFELWSAPCFRESTMYGIGGGVAIGSMQMLRSKAIMESAETMVKTGCAISLLSWMICRRRYYQEREATYETMEKLKRRQAQAAA 103
            ++ +++FL EL   PCFRES +YG GGG  +G++   R+++   +A+  VK     +   W++CRR Y  +R +   +++ + R  A+  A
Sbjct:   40 DEDSFAFLHELHRVPCFRESVLYGGGGGALLGALHFQRTRSGERAADVAVKASLVFASAYWLMCRRNYRAQRASVRTSIDAVGRAAAEGVA 130          
BLAST of Gchil3058.t1 vs. uniprot
Match: A0A7S0YK55_9CRYP (Cytochrome c oxidase assembly protein COX20, mitochondrial n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YK55_9CRYP)

HSP 1 Score: 57.4 bits (137), Expect = 4.750e-8
Identity = 34/96 (35.42%), Postives = 53/96 (55.21%), Query Frame = 0
Query:   21 FELWSAPCFRESTMYGIGGGVAIGSMQMLRSKAIMESAETMVKTGCAISLLSWMICRRRYYQEREATYETMEKLKRRQAQAAAARANKHRPQRERS 116
            + L SAPCFRE+ M+ IGG   +GS+Q++R +  M+     V T   +SL  W +CR       +A  E + +   RQAQ    RAN+ +  +E++
Sbjct:   35 WNLRSAPCFRETMMWSIGGSSLMGSLQIIRRRPAMQIGNVFVGTFTFLSLACWGVCRYETSMRHKAVSEAIVEQNSRQAQIE--RANREQAAKEKA 128          
BLAST of Gchil3058.t1 vs. uniprot
Match: A0A7S0ZEF4_9RHOD (Cytochrome c oxidase assembly protein COX20, mitochondrial n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZEF4_9RHOD)

HSP 1 Score: 56.6 bits (135), Expect = 1.120e-7
Identity = 27/86 (31.40%), Postives = 46/86 (53.49%), Query Frame = 0
Query:   11 DEEQGNYSFLFELWSAPCFRESTMYGIGGGVAIGSMQMLRSKAIMESAETMVKTGCAISLLSWMICRRRYYQEREATYETMEKLKR 96
            D +    +FLF+L   PCFR+S ++G+  G A+G+ +  R +   ++A+  VK     S  +W  CR  Y Q R+   E  ++ +R
Sbjct:   31 DIDASQLNFLFQLAKVPCFRDSLLFGMPAGFALGAFRFYRIRDADKAADLTVKGMLLFSAAAWTACRYEYRQRRKTIREAFDEQQR 116          
BLAST of Gchil3058.t1 vs. uniprot
Match: A0A0G4IHL0_PLABS (Cytochrome c oxidase assembly protein COX20, mitochondrial n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IHL0_PLABS)

HSP 1 Score: 53.1 bits (126), Expect = 1.810e-6
Identity = 21/74 (28.38%), Postives = 48/74 (64.86%), Query Frame = 0
Query:   20 LFELWSAPCFRESTMYGIGGGVAIGSMQMLRSKAIMESAETMVKTGCAISLLSWMICRRRYYQEREATYETMEK 93
            +F +   PCFR + ++GI  G+A+G+ +  R++++  + +  +KT   +SL++W++CRR +++ + A    M++
Sbjct:   37 MFSVKRMPCFRNACLWGIFTGLAMGAHRYRRTQSLWLATDRGIKTMLGMSLVTWVMCRRSFFERKAAIDSIMKR 110          
The following BLAST results are available for this feature:
BLAST of Gchil3058.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3J4D4_9FLOR2.590e-3960.91Cytochrome c oxidase assembly protein COX20, mitoc... [more]
A0A1X6NLZ9_PORUM1.310e-1031.87Cytochrome c oxidase assembly protein COX20, mitoc... [more]
A0A7S0YK55_9CRYP4.750e-835.42Cytochrome c oxidase assembly protein COX20, mitoc... [more]
A0A7S0ZEF4_9RHOD1.120e-731.40Cytochrome c oxidase assembly protein COX20, mitoc... [more]
A0A0G4IHL0_PLABS1.810e-628.38Cytochrome c oxidase assembly protein COX20, mitoc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 77..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..123
NoneNo IPR availablePANTHERPTHR31586:SF1CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX20, MITOCHONDRIALcoord: 21..117
IPR022533Cox20PFAMPF12597DUF3767coord: 20..102
e-value: 3.3E-15
score: 55.7
IPR022533Cox20PANTHERPTHR31586CYTOCHROME C OXIDASE PROTEIN 20coord: 21..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1564793..1565363 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3058.t1Gchil3058.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000106_pilon 1564793..1565363 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil3058.t1 ID=Gchil3058.t1|Name=Gchil3058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=124bp
MSANDRSDVGDEEQGNYSFLFELWSAPCFRESTMYGIGGGVAIGSMQMLR
SKAIMESAETMVKTGCAISLLSWMICRRRYYQEREATYETMEKLKRRQAQ
AAAARANKHRPQRERSSKQGDSY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022533Cox20