Gchil3058.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3058.t1
Unique NameGchil3058.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length124
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1564793..1565363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO48565
Preferred nameCOX20
PFAMsDUF3767
Max annot lvl33208|Metazoa
KEGG koko:K18184
KEGG Pathwayko04714,map04714
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006091,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008535,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0016043,GO:0017004,GO:0019866,GO:0022607,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0033108,GO:0033617,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0055114,GO:0065003,GO:0071840
Evalue1.43e-07
EggNOG OGs2CBZQ@1|root,2S3BD@2759|Eukaryota,3ACAC@33154|Opisthokonta,3BVKR@33208|Metazoa
Descriptioncytochrome C oxidase
COG categoryS
BRITEko00000,ko00001,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3058Gchil3058Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1564793..1565363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3058.t1Gchil3058.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1564793..1565363 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3058.t1.start1Gchil3058.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1564793..1564795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3058.t1.CDS1Gchil3058.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1564793..1564946 +
Gchil3058.t1.CDS2Gchil3058.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1565081..1565144 +
Gchil3058.t1.CDS3Gchil3058.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1565210..1565363 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3058.t1.exon1Gchil3058.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1564793..1564946 +
Gchil3058.t1.exon2Gchil3058.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1565081..1565144 +
Gchil3058.t1.exon3Gchil3058.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1565210..1565363 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3058.t1.intron1Gchil3058.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 1564947..1565080 +
Gchil3058.t1.intron2Gchil3058.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 1565145..1565209 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3058.t1.stop1Gchil3058.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1565361..1565363 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3058.t1 ID=Gchil3058.t1|Name=Gchil3058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=124bp
MSANDRSDVGDEEQGNYSFLFELWSAPCFRESTMYGIGGGVAIGSMQMLR
SKAIMESAETMVKTGCAISLLSWMICRRRYYQEREATYETMEKLKRRQAQ
AAAARANKHRPQRERSSKQGDSY*
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spliced messenger RNA

>Gchil3058.t1 ID=Gchil3058.t1|Name=Gchil3058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=372bp|location=Sequence derived from alignment at tig00000106_pilon:1564793..1565363+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCGAATGATAGGAGCGACGTAGGTGATGAAGAACAGGGAAATTA
CTCGTTCTTATTTGAGTTGTGGTCGGCACCCTGTTTTAGAGAGAGTACCA
TGTATGGTATCGGGGGTGGCGTTGCAATTGGTTCTATGCAAATGTTGCGG
AGCAAGGCGATTATGGAGTCTGCCGAAACAATGGTGAAGACAGGTTGTGC
AATTTCGTTACTGAGTTGGATGATATGTCGACGTCGATACTATCAGGAAA
GAGAAGCCACTTACGAAACAATGGAAAAGCTGAAGAGGAGACAGGCGCAG
GCAGCGGCGGCGCGTGCGAATAAACATCGTCCACAAAGGGAACGTTCCAG
CAAGCAAGGTGACAGTTATTGA
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protein sequence of Gchil3058.t1

>Gchil3058.t1 ID=Gchil3058.t1|Name=Gchil3058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=124bp
MSANDRSDVGDEEQGNYSFLFELWSAPCFRESTMYGIGGGVAIGSMQMLR
SKAIMESAETMVKTGCAISLLSWMICRRRYYQEREATYETMEKLKRRQAQ
AAAARANKHRPQRERSSKQGDSY*
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mRNA from alignment at tig00000106_pilon:1564793..1565363+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3058.t1 ID=Gchil3058.t1|Name=Gchil3058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=571bp|location=Sequence derived from alignment at tig00000106_pilon:1564793..1565363+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCGAATGATAGGAGCGACGTAGGTGATGAAGAACAGGGAAATTA
CTCGTTCTTATTTGAGTTGTGGTCGGCACCCTGTTTTAGAGAGAGTACCA
TGTATGGTATCGGGGGTGGCGTTGCAATTGGTTCTATGCAAATGTTGCGG
AGCAGTGCGTTGCCTTTCGTCTAGTTCGCTTTGTTTTGTCTTAAGGTCGG
TATAGAGAGGAGATATGAAGCTAACTGTCTTCTGGTGTGAGCTGCTTGAT
ACATTATTCCTCTTGGCTCGGGTTTTGTATTTTTACAGAGGCGATTATGG
AGTCTGCCGAAACAATGGTGAAGACAGGTTGTGCAATTTCGTTACTGAGT
TGGTATGTTTGTTTGTTGGATCTTGGTGTGAAACGTTGCTGACCAATTGC
TGTTGTTTGCACGACAGGATGATATGTCGACGTCGATACTATCAGGAAAG
AGAAGCCACTTACGAAACAATGGAAAAGCTGAAGAGGAGACAGGCGCAGG
CAGCGGCGGCGCGTGCGAATAAACATCGTCCACAAAGGGAACGTTCCAGC
AAGCAAGGTGACAGTTATTGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:1564793..1565363+

>Gchil3058.t1 ID=Gchil3058.t1|Name=Gchil3058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=372bp|location=Sequence derived from alignment at tig00000106_pilon:1564793..1565363+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCGAATGATAGGAGCGACGTAGGTGATGAAGAACAGGGAAATTA
CTCGTTCTTATTTGAGTTGTGGTCGGCACCCTGTTTTAGAGAGAGTACCA
TGTATGGTATCGGGGGTGGCGTTGCAATTGGTTCTATGCAAATGTTGCGG
AGCAAGGCGATTATGGAGTCTGCCGAAACAATGGTGAAGACAGGTTGTGC
AATTTCGTTACTGAGTTGGATGATATGTCGACGTCGATACTATCAGGAAA
GAGAAGCCACTTACGAAACAATGGAAAAGCTGAAGAGGAGACAGGCGCAG
GCAGCGGCGGCGCGTGCGAATAAACATCGTCCACAAAGGGAACGTTCCAG
CAAGCAAGGTGACAGTTATTGA
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