Gchil3001.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3001.t1
Unique NameGchil3001.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length80
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:897827..898139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002505679.1
PFAMsCostars
Max annot lvl33090|Viridiplantae
Evalue3.28e-29
EggNOG OGsKOG3376@1|root,KOG3376@2759|Eukaryota,37W0W@33090|Viridiplantae
Descriptioncostars family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3001Gchil3001Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 897827..898139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3001.t1Gchil3001.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 897827..898139 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3001.t1.start1Gchil3001.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 897827..897829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3001.t1.CDS1Gchil3001.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 897827..897906 +
Gchil3001.t1.CDS2Gchil3001.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 897980..898139 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3001.t1.exon1Gchil3001.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 897827..897906 +
Gchil3001.t1.exon2Gchil3001.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 897980..898139 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3001.t1.intron1Gchil3001.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 897907..897979 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3001.t1.stop1Gchil3001.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 898137..898139 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3001.t1 ID=Gchil3001.t1|Name=Gchil3001.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=80bp
MDVGGEVKQLIEEIKRLGDVGPDGKVSVKFVKLIDDERCGNIFEAIIGTL
KAARKTRVLDFEGEFLLKGVHDDVDIKLL*
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spliced messenger RNA

>Gchil3001.t1 ID=Gchil3001.t1|Name=Gchil3001.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=240bp|location=Sequence derived from alignment at tig00000106_pilon:897827..898139+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTCGGCGGTGAAGTCAAGCAGCTGATAGAGGAAATCAAGAGACT
CGGGGACGTTGGCCCAGATGGAAAAGTATCTGTCAAATTCGTTAAGCTTA
TTGATGATGAACGATGTGGGAACATCTTTGAAGCTATAATTGGAACTCTC
AAAGCCGCCCGTAAGACCAGGGTGCTCGATTTTGAAGGAGAATTCCTACT
CAAGGGTGTTCATGATGACGTTGATATAAAGTTGCTTTGA
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protein sequence of Gchil3001.t1

>Gchil3001.t1 ID=Gchil3001.t1|Name=Gchil3001.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=80bp
MDVGGEVKQLIEEIKRLGDVGPDGKVSVKFVKLIDDERCGNIFEAIIGTL
KAARKTRVLDFEGEFLLKGVHDDVDIKLL*
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mRNA from alignment at tig00000106_pilon:897827..898139+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3001.t1 ID=Gchil3001.t1|Name=Gchil3001.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=313bp|location=Sequence derived from alignment at tig00000106_pilon:897827..898139+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGTCGGCGGTGAAGTCAAGCAGCTGATAGAGGAAATCAAGAGACT
CGGGGACGTTGGCCCAGATGGAAAAGTATCGTAAGTTGAGCTATGATTCT
GTGAAACACTCCCTCCCATTAACAACATCTAACCTTTCCAAACCTGTTCT
AAGTGTCAAATTCGTTAAGCTTATTGATGATGAACGATGTGGGAACATCT
TTGAAGCTATAATTGGAACTCTCAAAGCCGCCCGTAAGACCAGGGTGCTC
GATTTTGAAGGAGAATTCCTACTCAAGGGTGTTCATGATGACGTTGATAT
AAAGTTGCTTTGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:897827..898139+

>Gchil3001.t1 ID=Gchil3001.t1|Name=Gchil3001.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=240bp|location=Sequence derived from alignment at tig00000106_pilon:897827..898139+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGTCGGCGGTGAAGTCAAGCAGCTGATAGAGGAAATCAAGAGACT
CGGGGACGTTGGCCCAGATGGAAAAGTATCTGTCAAATTCGTTAAGCTTA
TTGATGATGAACGATGTGGGAACATCTTTGAAGCTATAATTGGAACTCTC
AAAGCCGCCCGTAAGACCAGGGTGCTCGATTTTGAAGGAGAATTCCTACT
CAAGGGTGTTCATGATGACGTTGATATAAAGTTGCTTTGA
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