Gchil2926.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2926.t1
Unique NameGchil2926.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length560
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:313163..314842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2926Gchil2926Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 313163..314842 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2926.t1.stop1Gchil2926.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 313163..313165 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2926.t1.CDS1Gchil2926.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 313163..314842 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2926.t1.exon1Gchil2926.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 313163..314842 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2926.t1.start1Gchil2926.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 314840..314842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2926.t1Gchil2926.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 313163..314842 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2926.t1 ID=Gchil2926.t1|Name=Gchil2926.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=560bp
MADETYDVDQVDTAENDVEFNGGGYVDDDIEIDDDEDDDDPILKIGKASA
PSTPKVVKKRIRAPTATEAPQAKRLKGSDAHHNDYFLKAAGNKADREFVI
AKFMDRAPDLSSLPNMRVFRDGEGTVKSRKAGLDADKKQIESYNSFTGSR
KVERYRNLGIINVRDRAKKGWTMEVAPRDVADQLAEKKRSRMLKKASRAA
QEKNDEEPDSPEPVDEQELLAKVDTFNGVFEGRNTRTSYAFLVMQKGSRT
VEVYPVDDTSWFTFRAKRNLPPSVRNIVNEPKPKKDKLEARLQKYQDRYE
INRAWREHDMGDDSRLQKHTDGIASFGIKRKKASSADDGDAEALDFDQVF
DDDDVAQVDLELVEKPEKYIHVDAKRRHDLEKMLKDDPMLSPPKSPVSDD
EDASKSQGTRSPSPTSSRPPSGPRTSPKSRNIPQSKLSQNETSPRPTSSL
RISPSPNRSSRGNTPKRIDLSHLLPPPGVLPTEEHVRSVLLALIEGKRRI
TLKKVCSYFEIDKPDKKTNLSDHLKRVANFTKDPNNPRKVFLVPKAREAP
TANASNASG*
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spliced messenger RNA

>Gchil2926.t1 ID=Gchil2926.t1|Name=Gchil2926.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1680bp|location=Sequence derived from alignment at tig00000106_pilon:313163..314842- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGATGAGACTTATGACGTAGACCAGGTCGACACTGCCGAAAATGA
CGTTGAGTTTAACGGCGGAGGGTATGTTGATGATGATATTGAAATCGATG
ATGACGAAGATGATGATGACCCCATTTTAAAGATCGGAAAGGCATCCGCG
CCGTCCACTCCGAAGGTAGTCAAGAAGAGAATAAGGGCTCCAACAGCTAC
CGAAGCCCCGCAGGCAAAACGTTTGAAAGGGTCTGACGCTCACCACAACG
ATTATTTTCTAAAAGCCGCTGGAAATAAGGCGGACAGAGAATTTGTTATT
GCTAAGTTCATGGATCGCGCACCGGACCTTTCTAGCCTTCCGAACATGCG
TGTTTTCCGCGATGGCGAAGGGACCGTCAAGTCTAGAAAAGCCGGACTGG
ATGCGGATAAGAAGCAAATAGAGAGTTATAACTCCTTCACTGGAAGTCGA
AAGGTGGAGAGATATCGAAACCTTGGAATCATAAACGTCCGTGATCGAGC
TAAAAAAGGATGGACCATGGAGGTTGCTCCTCGCGACGTAGCAGATCAAC
TTGCTGAGAAAAAGCGGTCCAGAATGCTGAAGAAGGCATCAAGAGCTGCA
CAGGAGAAGAATGATGAAGAACCGGACTCTCCAGAGCCCGTTGATGAGCA
AGAGCTTCTAGCAAAAGTCGATACCTTCAACGGAGTTTTCGAGGGAAGGA
ATACGAGGACAAGTTATGCGTTCTTGGTGATGCAGAAGGGAAGCAGAACA
GTGGAGGTGTACCCAGTTGACGATACGTCTTGGTTCACTTTTCGTGCAAA
GAGAAATTTGCCACCCAGTGTTCGCAATATTGTGAATGAACCCAAACCAA
AGAAAGACAAACTCGAGGCCAGGCTTCAGAAATACCAAGATCGATATGAA
ATCAATCGGGCGTGGCGTGAGCACGATATGGGTGATGACAGTCGCCTTCA
GAAGCATACCGACGGAATAGCGAGTTTCGGCATAAAGAGAAAGAAAGCGT
CTAGCGCTGATGATGGTGATGCCGAAGCTTTAGACTTTGACCAAGTATTT
GATGATGACGATGTTGCTCAAGTTGATCTTGAATTGGTAGAGAAGCCTGA
AAAATATATTCACGTTGATGCAAAGAGACGTCATGACCTCGAGAAGATGT
TAAAGGATGACCCGATGTTATCTCCACCCAAGTCCCCTGTTTCAGACGAT
GAAGACGCATCTAAAAGCCAAGGGACAAGGAGCCCGTCTCCGACCTCGTC
CCGTCCTCCATCGGGACCAAGGACATCGCCCAAAAGTCGCAATATTCCTC
AGTCAAAACTGTCCCAAAACGAAACATCTCCGCGACCAACGTCCTCATTG
CGTATCAGTCCGTCTCCGAACAGAAGTTCTCGGGGCAATACGCCGAAGAG
AATAGATCTTTCCCACCTGTTACCACCACCCGGAGTTTTACCCACGGAAG
AACACGTTAGAAGTGTTCTTCTTGCTCTCATTGAAGGCAAGAGACGGATA
ACACTGAAGAAAGTGTGCAGCTACTTTGAGATTGACAAACCCGATAAGAA
GACGAACCTCAGTGATCACCTTAAGCGGGTTGCAAACTTCACAAAAGACC
CTAACAACCCAAGAAAGGTTTTTCTCGTACCTAAAGCAAGGGAAGCACCG
ACCGCGAATGCATCGAATGCATCAGGCTGA
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protein sequence of Gchil2926.t1

>Gchil2926.t1 ID=Gchil2926.t1|Name=Gchil2926.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=560bp
MADETYDVDQVDTAENDVEFNGGGYVDDDIEIDDDEDDDDPILKIGKASA
PSTPKVVKKRIRAPTATEAPQAKRLKGSDAHHNDYFLKAAGNKADREFVI
AKFMDRAPDLSSLPNMRVFRDGEGTVKSRKAGLDADKKQIESYNSFTGSR
KVERYRNLGIINVRDRAKKGWTMEVAPRDVADQLAEKKRSRMLKKASRAA
QEKNDEEPDSPEPVDEQELLAKVDTFNGVFEGRNTRTSYAFLVMQKGSRT
VEVYPVDDTSWFTFRAKRNLPPSVRNIVNEPKPKKDKLEARLQKYQDRYE
INRAWREHDMGDDSRLQKHTDGIASFGIKRKKASSADDGDAEALDFDQVF
DDDDVAQVDLELVEKPEKYIHVDAKRRHDLEKMLKDDPMLSPPKSPVSDD
EDASKSQGTRSPSPTSSRPPSGPRTSPKSRNIPQSKLSQNETSPRPTSSL
RISPSPNRSSRGNTPKRIDLSHLLPPPGVLPTEEHVRSVLLALIEGKRRI
TLKKVCSYFEIDKPDKKTNLSDHLKRVANFTKDPNNPRKVFLVPKAREAP
TANASNASG*
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mRNA from alignment at tig00000106_pilon:313163..314842-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2926.t1 ID=Gchil2926.t1|Name=Gchil2926.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1680bp|location=Sequence derived from alignment at tig00000106_pilon:313163..314842- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGATGAGACTTATGACGTAGACCAGGTCGACACTGCCGAAAATGA
CGTTGAGTTTAACGGCGGAGGGTATGTTGATGATGATATTGAAATCGATG
ATGACGAAGATGATGATGACCCCATTTTAAAGATCGGAAAGGCATCCGCG
CCGTCCACTCCGAAGGTAGTCAAGAAGAGAATAAGGGCTCCAACAGCTAC
CGAAGCCCCGCAGGCAAAACGTTTGAAAGGGTCTGACGCTCACCACAACG
ATTATTTTCTAAAAGCCGCTGGAAATAAGGCGGACAGAGAATTTGTTATT
GCTAAGTTCATGGATCGCGCACCGGACCTTTCTAGCCTTCCGAACATGCG
TGTTTTCCGCGATGGCGAAGGGACCGTCAAGTCTAGAAAAGCCGGACTGG
ATGCGGATAAGAAGCAAATAGAGAGTTATAACTCCTTCACTGGAAGTCGA
AAGGTGGAGAGATATCGAAACCTTGGAATCATAAACGTCCGTGATCGAGC
TAAAAAAGGATGGACCATGGAGGTTGCTCCTCGCGACGTAGCAGATCAAC
TTGCTGAGAAAAAGCGGTCCAGAATGCTGAAGAAGGCATCAAGAGCTGCA
CAGGAGAAGAATGATGAAGAACCGGACTCTCCAGAGCCCGTTGATGAGCA
AGAGCTTCTAGCAAAAGTCGATACCTTCAACGGAGTTTTCGAGGGAAGGA
ATACGAGGACAAGTTATGCGTTCTTGGTGATGCAGAAGGGAAGCAGAACA
GTGGAGGTGTACCCAGTTGACGATACGTCTTGGTTCACTTTTCGTGCAAA
GAGAAATTTGCCACCCAGTGTTCGCAATATTGTGAATGAACCCAAACCAA
AGAAAGACAAACTCGAGGCCAGGCTTCAGAAATACCAAGATCGATATGAA
ATCAATCGGGCGTGGCGTGAGCACGATATGGGTGATGACAGTCGCCTTCA
GAAGCATACCGACGGAATAGCGAGTTTCGGCATAAAGAGAAAGAAAGCGT
CTAGCGCTGATGATGGTGATGCCGAAGCTTTAGACTTTGACCAAGTATTT
GATGATGACGATGTTGCTCAAGTTGATCTTGAATTGGTAGAGAAGCCTGA
AAAATATATTCACGTTGATGCAAAGAGACGTCATGACCTCGAGAAGATGT
TAAAGGATGACCCGATGTTATCTCCACCCAAGTCCCCTGTTTCAGACGAT
GAAGACGCATCTAAAAGCCAAGGGACAAGGAGCCCGTCTCCGACCTCGTC
CCGTCCTCCATCGGGACCAAGGACATCGCCCAAAAGTCGCAATATTCCTC
AGTCAAAACTGTCCCAAAACGAAACATCTCCGCGACCAACGTCCTCATTG
CGTATCAGTCCGTCTCCGAACAGAAGTTCTCGGGGCAATACGCCGAAGAG
AATAGATCTTTCCCACCTGTTACCACCACCCGGAGTTTTACCCACGGAAG
AACACGTTAGAAGTGTTCTTCTTGCTCTCATTGAAGGCAAGAGACGGATA
ACACTGAAGAAAGTGTGCAGCTACTTTGAGATTGACAAACCCGATAAGAA
GACGAACCTCAGTGATCACCTTAAGCGGGTTGCAAACTTCACAAAAGACC
CTAACAACCCAAGAAAGGTTTTTCTCGTACCTAAAGCAAGGGAAGCACCG
ACCGCGAATGCATCGAATGCATCAGGCTGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:313163..314842-

>Gchil2926.t1 ID=Gchil2926.t1|Name=Gchil2926.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1680bp|location=Sequence derived from alignment at tig00000106_pilon:313163..314842- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGATGAGACTTATGACGTAGACCAGGTCGACACTGCCGAAAATGA
CGTTGAGTTTAACGGCGGAGGGTATGTTGATGATGATATTGAAATCGATG
ATGACGAAGATGATGATGACCCCATTTTAAAGATCGGAAAGGCATCCGCG
CCGTCCACTCCGAAGGTAGTCAAGAAGAGAATAAGGGCTCCAACAGCTAC
CGAAGCCCCGCAGGCAAAACGTTTGAAAGGGTCTGACGCTCACCACAACG
ATTATTTTCTAAAAGCCGCTGGAAATAAGGCGGACAGAGAATTTGTTATT
GCTAAGTTCATGGATCGCGCACCGGACCTTTCTAGCCTTCCGAACATGCG
TGTTTTCCGCGATGGCGAAGGGACCGTCAAGTCTAGAAAAGCCGGACTGG
ATGCGGATAAGAAGCAAATAGAGAGTTATAACTCCTTCACTGGAAGTCGA
AAGGTGGAGAGATATCGAAACCTTGGAATCATAAACGTCCGTGATCGAGC
TAAAAAAGGATGGACCATGGAGGTTGCTCCTCGCGACGTAGCAGATCAAC
TTGCTGAGAAAAAGCGGTCCAGAATGCTGAAGAAGGCATCAAGAGCTGCA
CAGGAGAAGAATGATGAAGAACCGGACTCTCCAGAGCCCGTTGATGAGCA
AGAGCTTCTAGCAAAAGTCGATACCTTCAACGGAGTTTTCGAGGGAAGGA
ATACGAGGACAAGTTATGCGTTCTTGGTGATGCAGAAGGGAAGCAGAACA
GTGGAGGTGTACCCAGTTGACGATACGTCTTGGTTCACTTTTCGTGCAAA
GAGAAATTTGCCACCCAGTGTTCGCAATATTGTGAATGAACCCAAACCAA
AGAAAGACAAACTCGAGGCCAGGCTTCAGAAATACCAAGATCGATATGAA
ATCAATCGGGCGTGGCGTGAGCACGATATGGGTGATGACAGTCGCCTTCA
GAAGCATACCGACGGAATAGCGAGTTTCGGCATAAAGAGAAAGAAAGCGT
CTAGCGCTGATGATGGTGATGCCGAAGCTTTAGACTTTGACCAAGTATTT
GATGATGACGATGTTGCTCAAGTTGATCTTGAATTGGTAGAGAAGCCTGA
AAAATATATTCACGTTGATGCAAAGAGACGTCATGACCTCGAGAAGATGT
TAAAGGATGACCCGATGTTATCTCCACCCAAGTCCCCTGTTTCAGACGAT
GAAGACGCATCTAAAAGCCAAGGGACAAGGAGCCCGTCTCCGACCTCGTC
CCGTCCTCCATCGGGACCAAGGACATCGCCCAAAAGTCGCAATATTCCTC
AGTCAAAACTGTCCCAAAACGAAACATCTCCGCGACCAACGTCCTCATTG
CGTATCAGTCCGTCTCCGAACAGAAGTTCTCGGGGCAATACGCCGAAGAG
AATAGATCTTTCCCACCTGTTACCACCACCCGGAGTTTTACCCACGGAAG
AACACGTTAGAAGTGTTCTTCTTGCTCTCATTGAAGGCAAGAGACGGATA
ACACTGAAGAAAGTGTGCAGCTACTTTGAGATTGACAAACCCGATAAGAA
GACGAACCTCAGTGATCACCTTAAGCGGGTTGCAAACTTCACAAAAGACC
CTAACAACCCAAGAAAGGTTTTTCTCGTACCTAAAGCAAGGGAAGCACCG
ACCGCGAATGCATCGAATGCATCAGGCTGA
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