Gchil2911.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2911.t1
Unique Name	Gchil2911.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	326

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000106_pilon	contig	tig00000106_pilon:187933..188910 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72664.XP_006413227.1
PFAMs	NAP
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K11279
GOs	GO:0000724,GO:0000725,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008283,GO:0009987,GO:0016020,GO:0016444,GO:0030154,GO:0032502,GO:0033554,GO:0034641,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048869,GO:0050896,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:1901360
Evalue	3.67e-29
EggNOG OGs	KOG1507@1\|root,KOG1507@2759\|Eukaryota,37P8A@33090\|Viridiplantae,3GEGH@35493\|Streptophyta,3HNTC@3699\|Brassicales
Description	Nucleosome assembly protein
COG category	BD
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2911	Gchil2911	Gracilaria chilensis NLEC103_M9 male	gene	tig00000106_pilon 187933..188910 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2911.t1.start1	Gchil2911.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000106_pilon 187933..187935 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2911.t1.CDS1	Gchil2911.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000106_pilon 187933..188910 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2911.t1.exon1	Gchil2911.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000106_pilon 187933..188910 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2911.t1.stop1	Gchil2911.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000106_pilon 188908..188910 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2911.t1	Gchil2911.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000106_pilon 187933..188910 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000106_pilon:187933..188910+
coding sequence from alignment at tig00000106_pilon:187933..188910+

mRNA sequence

>Gchil2911.t1 ID=Gchil2911.t1|Name=Gchil2911.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=326bp
MSSTQDSHSEQGESEALSDENLRRLAPDLFDNESKKTHLLQLRDFHRRYD
ELYDDYMMKKMQLEEQLMTQLKPVLQERKLCIQKSGLDDFWSTVFEHCET
LSENITTRDALALRYLEDVSCEVATSQHKIRNKPKWPTGSFILYFTFRNN
PFFENQTLTKSYIMCEQDFEHASQTLGCSIKWKGGKDLTVKTLRKKGQNG
KTLVKKQKTDSFFNFFDPPKMACCEEDEGRMEEIEEVLDADFELAECLKD
DVIPRALLYYVDVAQDSECQSANCACEEDGTHAAEGHAAEGHAAEGHAAE
GHAAEGEAAEGEAAEGEAAGVRDSA*

spliced messenger RNA

>Gchil2911.t1 ID=Gchil2911.t1|Name=Gchil2911.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00000106_pilon:187933..188910+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTCAACACAAGATTCGCACTCGGAACAAGGCGAGAGTGAAGCGCT
GAGTGACGAAAACCTGCGGCGACTGGCACCCGATCTGTTTGATAACGAGT
CCAAAAAGACACATCTTTTGCAACTGCGAGACTTTCATCGCAGGTACGAT
GAGCTTTACGACGACTATATGATGAAGAAAATGCAGCTGGAGGAGCAGTT
GATGACACAATTGAAGCCCGTGTTACAGGAGCGGAAGCTGTGTATACAGA
AAAGCGGCCTTGATGACTTTTGGAGCACGGTGTTTGAGCATTGTGAAACG
CTTTCAGAGAACATTACAACGCGAGACGCATTGGCTTTGAGATACCTGGA
GGACGTGAGCTGCGAGGTGGCAACAAGCCAACACAAGATACGCAACAAGC
CGAAATGGCCCACAGGATCGTTCATTCTGTACTTTACGTTTCGCAACAAC
CCGTTCTTCGAGAATCAAACGTTGACAAAAAGCTACATCATGTGTGAACA
AGACTTTGAACACGCGTCGCAAACACTGGGCTGTAGCATAAAGTGGAAAG
GCGGCAAGGATCTAACGGTGAAAACGCTGCGTAAAAAGGGTCAAAACGGC
AAGACGCTGGTGAAAAAACAAAAGACGGACTCGTTCTTCAACTTTTTCGA
CCCGCCAAAAATGGCGTGCTGTGAGGAAGATGAGGGGCGAATGGAAGAGA
TTGAAGAAGTGTTGGACGCGGACTTTGAGCTGGCCGAGTGCCTCAAAGAC
GACGTGATTCCGCGCGCGTTGCTGTACTATGTTGACGTGGCACAGGACAG
CGAATGCCAAAGCGCCAACTGCGCGTGCGAGGAAGATGGGACGCATGCAG
CGGAAGGGCATGCAGCGGAAGGGCATGCAGCGGAAGGGCATGCAGCGGAA
GGGCATGCagcggaaggggaagcggcggaaggggaagcggcggaagggga
agcggCGGGAGTGAGGGACAGTGCGTGA

protein sequence of Gchil2911.t1

>Gchil2911.t1 ID=Gchil2911.t1|Name=Gchil2911.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=326bp
MSSTQDSHSEQGESEALSDENLRRLAPDLFDNESKKTHLLQLRDFHRRYD
ELYDDYMMKKMQLEEQLMTQLKPVLQERKLCIQKSGLDDFWSTVFEHCET
LSENITTRDALALRYLEDVSCEVATSQHKIRNKPKWPTGSFILYFTFRNN
PFFENQTLTKSYIMCEQDFEHASQTLGCSIKWKGGKDLTVKTLRKKGQNG
KTLVKKQKTDSFFNFFDPPKMACCEEDEGRMEEIEEVLDADFELAECLKD
DVIPRALLYYVDVAQDSECQSANCACEEDGTHAAEGHAAEGHAAEGHAAE
GHAAEGEAAEGEAAEGEAAGVRDSA*

mRNA from alignment at tig00000106_pilon:187933..188910+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2911.t1 ID=Gchil2911.t1|Name=Gchil2911.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00000106_pilon:187933..188910+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTTCAACACAAGATTCGCACTCGGAACAAGGCGAGAGTGAAGCGCT
GAGTGACGAAAACCTGCGGCGACTGGCACCCGATCTGTTTGATAACGAGT
CCAAAAAGACACATCTTTTGCAACTGCGAGACTTTCATCGCAGGTACGAT
GAGCTTTACGACGACTATATGATGAAGAAAATGCAGCTGGAGGAGCAGTT
GATGACACAATTGAAGCCCGTGTTACAGGAGCGGAAGCTGTGTATACAGA
AAAGCGGCCTTGATGACTTTTGGAGCACGGTGTTTGAGCATTGTGAAACG
CTTTCAGAGAACATTACAACGCGAGACGCATTGGCTTTGAGATACCTGGA
GGACGTGAGCTGCGAGGTGGCAACAAGCCAACACAAGATACGCAACAAGC
CGAAATGGCCCACAGGATCGTTCATTCTGTACTTTACGTTTCGCAACAAC
CCGTTCTTCGAGAATCAAACGTTGACAAAAAGCTACATCATGTGTGAACA
AGACTTTGAACACGCGTCGCAAACACTGGGCTGTAGCATAAAGTGGAAAG
GCGGCAAGGATCTAACGGTGAAAACGCTGCGTAAAAAGGGTCAAAACGGC
AAGACGCTGGTGAAAAAACAAAAGACGGACTCGTTCTTCAACTTTTTCGA
CCCGCCAAAAATGGCGTGCTGTGAGGAAGATGAGGGGCGAATGGAAGAGA
TTGAAGAAGTGTTGGACGCGGACTTTGAGCTGGCCGAGTGCCTCAAAGAC
GACGTGATTCCGCGCGCGTTGCTGTACTATGTTGACGTGGCACAGGACAG
CGAATGCCAAAGCGCCAACTGCGCGTGCGAGGAAGATGGGACGCATGCAG
CGGAAGGGCATGCAGCGGAAGGGCATGCAGCGGAAGGGCATGCAGCGGAA
GGGCATGCagcggaaggggaagcggcggaaggggaagcggcggaagggga
agcggCGGGAGTGAGGGACAGTGCGTGA

Coding sequence (CDS) from alignment at tig00000106_pilon:187933..188910+

>Gchil2911.t1 ID=Gchil2911.t1|Name=Gchil2911.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=978bp|location=Sequence derived from alignment at tig00000106_pilon:187933..188910+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTTCAACACAAGATTCGCACTCGGAACAAGGCGAGAGTGAAGCGCT
GAGTGACGAAAACCTGCGGCGACTGGCACCCGATCTGTTTGATAACGAGT
CCAAAAAGACACATCTTTTGCAACTGCGAGACTTTCATCGCAGGTACGAT
GAGCTTTACGACGACTATATGATGAAGAAAATGCAGCTGGAGGAGCAGTT
GATGACACAATTGAAGCCCGTGTTACAGGAGCGGAAGCTGTGTATACAGA
AAAGCGGCCTTGATGACTTTTGGAGCACGGTGTTTGAGCATTGTGAAACG
CTTTCAGAGAACATTACAACGCGAGACGCATTGGCTTTGAGATACCTGGA
GGACGTGAGCTGCGAGGTGGCAACAAGCCAACACAAGATACGCAACAAGC
CGAAATGGCCCACAGGATCGTTCATTCTGTACTTTACGTTTCGCAACAAC
CCGTTCTTCGAGAATCAAACGTTGACAAAAAGCTACATCATGTGTGAACA
AGACTTTGAACACGCGTCGCAAACACTGGGCTGTAGCATAAAGTGGAAAG
GCGGCAAGGATCTAACGGTGAAAACGCTGCGTAAAAAGGGTCAAAACGGC
AAGACGCTGGTGAAAAAACAAAAGACGGACTCGTTCTTCAACTTTTTCGA
CCCGCCAAAAATGGCGTGCTGTGAGGAAGATGAGGGGCGAATGGAAGAGA
TTGAAGAAGTGTTGGACGCGGACTTTGAGCTGGCCGAGTGCCTCAAAGAC
GACGTGATTCCGCGCGCGTTGCTGTACTATGTTGACGTGGCACAGGACAG
CGAATGCCAAAGCGCCAACTGCGCGTGCGAGGAAGATGGGACGCATGCAG
CGGAAGGGCATGCAGCGGAAGGGCATGCAGCGGAAGGGCATGCAGCGGAA
GGGCATGCagcggaaggggaagcggcggaaggggaagcggcggaagggga
agcggCGGGAGTGAGGGACAGTGCGTGA