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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 269797.Mbar_A0545 |
| PFAMs | DUF4062,WD40 |
| Max annot lvl | 2157|Archaea |
| Evalue | 3.95e-16 |
| EggNOG OGs | COG2319@1|root,arCOG02561@2157|Archaea |
| Description | Tetratricopeptide repeat |
| COG category | E |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil3038.t1 ID=Gchil3038.t1|Name=Gchil3038.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=931bp MSFFDITGLIGSLVTLRDELEKLRDRYKTLKNDIPRAISEITSSIAECSS DLENLNAQLAHTKHIENQTLKHIERQLKQISSLCSESFETLCDVNQKLSS RLYGFFRARKIADFTLGPLQSRFATAVGELNELNGMFAIIHVVEGSKDEV VCKMNEQHPRAIEDVFKIWFMERSGPDLSCQMETKDSYESLAKTAVLEAE LRKQRLVVLQGGPGMGKTSTLCALSRDKDVRFRFVDGVYWISLGMSATVC EFIHRLSGIVASAGGKSVSKRINRSLDEAIAVEEACSWFHAKRFLFLVDD VWKGKDFDASFISLLHDLALAGSGSALVYTTRQVAMIGNSMHIQFCPRNT YGLHSQSILNSSAGVEVDGVIAMNQTYQKLLCLCGGIPFPLAVAGRALSR LCLRNLTFLEAVEEFVRRLDIEEDILTARIDGYRSLTVQFKAALGILDEN LESLTCVPQDSSLARLYISLAVLEKQQFVPLSMLQHLWGVSFQNTYDIAN GFDGVGIAHLRYESTDIGAMKIPGLRLNDLAHDFILSEGKGFITTFHREL VESYRSLLTNEFPHGKMLSPWWQLVNELKDEGYFSRNLVRHLDESGMRTE LAILLSHPNWFFCQLNSGGILQIESEIARIYPNIDGVLNQGSDVPLVLNS KGLEYLSWAARLSWSAIADNPREKWFQIHGRLLHLAENNKTISEYIHKIQ KHASKPWLKSILNCLSSPGGKRKSFVSIATGLCCMVQLNDDEVVCGCVGG EVSIINLRYAKVMRQWTADQSRMNVYEVVIPRDRSALLLGLWDGTFQLLE GPNWTLKKTLSRHESFVCSMGLTDDKRFMLSTGYEFSMRLWDMEKGIQLG NAINAYEGGSEGINGGAKPFCITAVPGDHSFIVSGDDHILRRLDVRLGTP GENEVIIPAFSSTDDLSFYLSSAWRIESGD* back to topspliced messenger RNA >Gchil3038.t1 ID=Gchil3038.t1|Name=Gchil3038.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2793bp|location=Sequence derived from alignment at tig00000106_pilon:1308867..1311659+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCATTCTTTGATATAACTGGACTTATAGGAAGTCTGGTTACACTTCG AGACGAACTAGAGAAGCTCCGAGATCGTTACAAAACTTTAAAGAACGATA TACCCCGTGCCATATCGGAGATCACCTCTTCCATTGCCGAGTGTTCTTCC GATTTAGAGAACCTAAATGCCCAGCTTGCCCATACAAAGCATATTGAAAA CCAGACATTGAAACATATTGAAAGGCAACTTAAACAGATATCTTCACTTT GTTCCGAATCGTTCGAAACACTCTGCGATGTCAATCAGAAACTTAGCTCT CGCCTGTACGGGTTTTTCCGTGCCAGGAAGATTGCTGATTTTACTCTCGG TCCTTTGCAATCCCGTTTCGCAACAGCAGTGGGAGAATTAAACGAACTGA ACGGCATGTTTGCAATTATACATGTTGTTGAAGGCTCAAAAGACGAAGTG GTTTGTAAAATGAATGAACAACACCCAAGAGCGATCGAGGACGTCTTTAA AATTTGGTTCATGGAACGATCTGGACCAGACCTTTCCTGTCAAATGGAGA CTAAGGATTCATATGAGTCGCTCGCGAAAACCGCAGTTCTGGAAGCAGAA TTAAGGAAACAACGTCTTGTAGTTCTCCAAGGTGGGCCTGGTATGGGAAA GACATCAACACTATGTGCGCTTTCTCGGGACAAAGATGTTCGATTTCGAT TTGTGGATGGCGTATACTGGATTTCGTTAGGCATGTCCGCAACTGTTTGC GAGTTTATTCACCGCCTTTCCGGAATAGTCGCATCGGCAGGAGGAAAATC TGTCTCCAAAAGAATCAATAGATCATTAGATGAGGCTATTGCTGTTGAAG AAGCATGCAGCTGGTTTCATGCCAAGCGATTCCTATTTCTGGTCGATGAC GTTTGGAAAGGAAAAGACTTCGATGCAAGTTTTATATCCCTACTTCATGA TCTTGCTCTCGCTGGGTCCGGAAGCGCTCTGGTTTACACCACCCGTCAAG TAGCGATGATTGGAAATAGCATGCACATTCAATTTTGCCCTAGAAATACA TATGGATTGCATTCTCAATCAATACTAAATTCATCAGCAGGTGTAGAAGT CGATGGTGTAATTGCCATGAATCAGACCTACCAAAAACTACTCTGCCTTT GTGGTGGAATCCCATTCCCTTTAGCAGTGGCCGGAAGGGCGTTGTCCAGA TTGTGTCTCAGAAACCTAACGTTCTTAGAGGCTGTGGAAGAATTTGTACG ACGCTTAGATATCGAAGAAGACATTTTGACTGCTCGCATTGATGGATACA GGAGCTTGACCGTCCAATTCAAGGCTGCCCTCGGGATCCTCGACGAAAAC CTCGAAAGCCTCACATGCGTACCGCAAGATAGTTCTTTGGCTAGACTTTA TATTTCCTTAGCTGTGCTTGAGAAACAGCAGTTTGTTCCTCTTTCTATGC TGCAGCATCTCTGGGGTGTATCGTTTCAAAACACTTACGACATAGCAAAT GGGTTTGATGGTGTTGGAATAGCCCATCTGCGATATGAGTCTACGGATAT TGGTGCCATGAAAATTCCTGGTTTGCGTTTGAACGATTTGGCTCATGATT TTATTCTTTCTGAAGGCAAGGGTTTTATTACAACCTTTCATAGAGAACTT GTTGAGTCGTATCGCTCTCTTCTAACCAATGAGTTTCCGCATGGAAAAAT GTTGAGCCCCTGGTGGCAGTTGGTGAACGAACTGAAAGACGAGGGATATT TTTCGCGAAACTTAGTTCGTCACCTTGATGAATCCGGAATGCGCACTGAA CTTGCAATACTATTGTCGCATCCAAACTGGTTTTTTTGTCAGCTCAACTC AGGCGGTATACTCCAGATTGAATCCGAAATCGCTAGGATTTATCCAAATA TCGACGGCGTATTGAATCAGGGCTCTGATGTGCCATTAGTTCTAAATTCA AAGGGGCTTGAATATCTTAGTTGGGCTGCTCGCCTTTCGTGGTCTGCTAT TGCCGACAATCCCAGGGAAAAATGGTTTCAAATCCATGGGCGCTTACTTC ATCTTGCTGAAAATAACAAAACTATCAGCGAATACATACACAAAATCCAA AAACATGCGTCCAAGCCTTGGCTTAAATCAATTCTCAACTGTTTGTCGTC GCCTGGAGGCAAGCGTAAGAGTTTTGTGAGCATTGCGACTGGTTTATGTT GTATGGTGCAACTGAATGATGACGAAGTAGTGTGCGGCTGCGTCGGAGGA GAAGTTTCCATAATCAATCTTCGCTATGCAAAAGTCATGCGGCAGTGGAC CGCGGACCAAAGCAGAATGAATGTATATGAAGTTGTCATTCCTCGTGACC GTAGCGCCCTGCTCCTTGGTTTGTGGGATGGCACGTTTCAGCTCTTGGAA GGACCCAATTGGACTTTGAAGAAGACATTGTCTCGTCATGAGAGTTTTGT TTGTAGCATGGGACTAACAGATGACAAGAGGTTCATGCTCTCTACGGGAT ATGAATTCTCTATGCGGTTATGGGACATGGAAAAGGGCATTCAACTGGGA AACGCGATAAATGCTTATGAAGGAGGATCTGAGGGGATAAATGGAGGAGC AAAACCTTTTTGTATAACAGCTGTCCCTGGCGATCATAGCTTCATTGTGA GCGGTGATGACCACATTCTACGGAGATTGGATGTCCGCTTGGGAACTCCG GGTGAAAATGAAGTAATCATACCTGCATTCAGTTCAACTGACGATCTAAG TTTCTATTTGTCTTCTGCATGGAGGATAGAGTCTGGAGATTGA back to topprotein sequence of Gchil3038.t1 >Gchil3038.t1 ID=Gchil3038.t1|Name=Gchil3038.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=931bp
MSFFDITGLIGSLVTLRDELEKLRDRYKTLKNDIPRAISEITSSIAECSS DLENLNAQLAHTKHIENQTLKHIERQLKQISSLCSESFETLCDVNQKLSS RLYGFFRARKIADFTLGPLQSRFATAVGELNELNGMFAIIHVVEGSKDEV VCKMNEQHPRAIEDVFKIWFMERSGPDLSCQMETKDSYESLAKTAVLEAE LRKQRLVVLQGGPGMGKTSTLCALSRDKDVRFRFVDGVYWISLGMSATVC EFIHRLSGIVASAGGKSVSKRINRSLDEAIAVEEACSWFHAKRFLFLVDD VWKGKDFDASFISLLHDLALAGSGSALVYTTRQVAMIGNSMHIQFCPRNT YGLHSQSILNSSAGVEVDGVIAMNQTYQKLLCLCGGIPFPLAVAGRALSR LCLRNLTFLEAVEEFVRRLDIEEDILTARIDGYRSLTVQFKAALGILDEN LESLTCVPQDSSLARLYISLAVLEKQQFVPLSMLQHLWGVSFQNTYDIAN GFDGVGIAHLRYESTDIGAMKIPGLRLNDLAHDFILSEGKGFITTFHREL VESYRSLLTNEFPHGKMLSPWWQLVNELKDEGYFSRNLVRHLDESGMRTE LAILLSHPNWFFCQLNSGGILQIESEIARIYPNIDGVLNQGSDVPLVLNS KGLEYLSWAARLSWSAIADNPREKWFQIHGRLLHLAENNKTISEYIHKIQ KHASKPWLKSILNCLSSPGGKRKSFVSIATGLCCMVQLNDDEVVCGCVGG EVSIINLRYAKVMRQWTADQSRMNVYEVVIPRDRSALLLGLWDGTFQLLE GPNWTLKKTLSRHESFVCSMGLTDDKRFMLSTGYEFSMRLWDMEKGIQLG NAINAYEGGSEGINGGAKPFCITAVPGDHSFIVSGDDHILRRLDVRLGTP GENEVIIPAFSSTDDLSFYLSSAWRIESGD* back to topmRNA from alignment at tig00000106_pilon:1308867..1311659+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil3038.t1 ID=Gchil3038.t1|Name=Gchil3038.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2793bp|location=Sequence derived from alignment at tig00000106_pilon:1308867..1311659+ (Gracilaria chilensis NLEC103_M9 male) ATGTCATTCTTTGATATAACTGGACTTATAGGAAGTCTGGTTACACTTCG
AGACGAACTAGAGAAGCTCCGAGATCGTTACAAAACTTTAAAGAACGATA
TACCCCGTGCCATATCGGAGATCACCTCTTCCATTGCCGAGTGTTCTTCC
GATTTAGAGAACCTAAATGCCCAGCTTGCCCATACAAAGCATATTGAAAA
CCAGACATTGAAACATATTGAAAGGCAACTTAAACAGATATCTTCACTTT
GTTCCGAATCGTTCGAAACACTCTGCGATGTCAATCAGAAACTTAGCTCT
CGCCTGTACGGGTTTTTCCGTGCCAGGAAGATTGCTGATTTTACTCTCGG
TCCTTTGCAATCCCGTTTCGCAACAGCAGTGGGAGAATTAAACGAACTGA
ACGGCATGTTTGCAATTATACATGTTGTTGAAGGCTCAAAAGACGAAGTG
GTTTGTAAAATGAATGAACAACACCCAAGAGCGATCGAGGACGTCTTTAA
AATTTGGTTCATGGAACGATCTGGACCAGACCTTTCCTGTCAAATGGAGA
CTAAGGATTCATATGAGTCGCTCGCGAAAACCGCAGTTCTGGAAGCAGAA
TTAAGGAAACAACGTCTTGTAGTTCTCCAAGGTGGGCCTGGTATGGGAAA
GACATCAACACTATGTGCGCTTTCTCGGGACAAAGATGTTCGATTTCGAT
TTGTGGATGGCGTATACTGGATTTCGTTAGGCATGTCCGCAACTGTTTGC
GAGTTTATTCACCGCCTTTCCGGAATAGTCGCATCGGCAGGAGGAAAATC
TGTCTCCAAAAGAATCAATAGATCATTAGATGAGGCTATTGCTGTTGAAG
AAGCATGCAGCTGGTTTCATGCCAAGCGATTCCTATTTCTGGTCGATGAC
GTTTGGAAAGGAAAAGACTTCGATGCAAGTTTTATATCCCTACTTCATGA
TCTTGCTCTCGCTGGGTCCGGAAGCGCTCTGGTTTACACCACCCGTCAAG
TAGCGATGATTGGAAATAGCATGCACATTCAATTTTGCCCTAGAAATACA
TATGGATTGCATTCTCAATCAATACTAAATTCATCAGCAGGTGTAGAAGT
CGATGGTGTAATTGCCATGAATCAGACCTACCAAAAACTACTCTGCCTTT
GTGGTGGAATCCCATTCCCTTTAGCAGTGGCCGGAAGGGCGTTGTCCAGA
TTGTGTCTCAGAAACCTAACGTTCTTAGAGGCTGTGGAAGAATTTGTACG
ACGCTTAGATATCGAAGAAGACATTTTGACTGCTCGCATTGATGGATACA
GGAGCTTGACCGTCCAATTCAAGGCTGCCCTCGGGATCCTCGACGAAAAC
CTCGAAAGCCTCACATGCGTACCGCAAGATAGTTCTTTGGCTAGACTTTA
TATTTCCTTAGCTGTGCTTGAGAAACAGCAGTTTGTTCCTCTTTCTATGC
TGCAGCATCTCTGGGGTGTATCGTTTCAAAACACTTACGACATAGCAAAT
GGGTTTGATGGTGTTGGAATAGCCCATCTGCGATATGAGTCTACGGATAT
TGGTGCCATGAAAATTCCTGGTTTGCGTTTGAACGATTTGGCTCATGATT
TTATTCTTTCTGAAGGCAAGGGTTTTATTACAACCTTTCATAGAGAACTT
GTTGAGTCGTATCGCTCTCTTCTAACCAATGAGTTTCCGCATGGAAAAAT
GTTGAGCCCCTGGTGGCAGTTGGTGAACGAACTGAAAGACGAGGGATATT
TTTCGCGAAACTTAGTTCGTCACCTTGATGAATCCGGAATGCGCACTGAA
CTTGCAATACTATTGTCGCATCCAAACTGGTTTTTTTGTCAGCTCAACTC
AGGCGGTATACTCCAGATTGAATCCGAAATCGCTAGGATTTATCCAAATA
TCGACGGCGTATTGAATCAGGGCTCTGATGTGCCATTAGTTCTAAATTCA
AAGGGGCTTGAATATCTTAGTTGGGCTGCTCGCCTTTCGTGGTCTGCTAT
TGCCGACAATCCCAGGGAAAAATGGTTTCAAATCCATGGGCGCTTACTTC
ATCTTGCTGAAAATAACAAAACTATCAGCGAATACATACACAAAATCCAA
AAACATGCGTCCAAGCCTTGGCTTAAATCAATTCTCAACTGTTTGTCGTC
GCCTGGAGGCAAGCGTAAGAGTTTTGTGAGCATTGCGACTGGTTTATGTT
GTATGGTGCAACTGAATGATGACGAAGTAGTGTGCGGCTGCGTCGGAGGA
GAAGTTTCCATAATCAATCTTCGCTATGCAAAAGTCATGCGGCAGTGGAC
CGCGGACCAAAGCAGAATGAATGTATATGAAGTTGTCATTCCTCGTGACC
GTAGCGCCCTGCTCCTTGGTTTGTGGGATGGCACGTTTCAGCTCTTGGAA
GGACCCAATTGGACTTTGAAGAAGACATTGTCTCGTCATGAGAGTTTTGT
TTGTAGCATGGGACTAACAGATGACAAGAGGTTCATGCTCTCTACGGGAT
ATGAATTCTCTATGCGGTTATGGGACATGGAAAAGGGCATTCAACTGGGA
AACGCGATAAATGCTTATGAAGGAGGATCTGAGGGGATAAATGGAGGAGC
AAAACCTTTTTGTATAACAGCTGTCCCTGGCGATCATAGCTTCATTGTGA
GCGGTGATGACCACATTCTACGGAGATTGGATGTCCGCTTGGGAACTCCG
GGTGAAAATGAAGTAATCATACCTGCATTCAGTTCAACTGACGATCTAAG
TTTCTATTTGTCTTCTGCATGGAGGATAGAGTCTGGAGATTGA back to topCoding sequence (CDS) from alignment at tig00000106_pilon:1308867..1311659+ >Gchil3038.t1 ID=Gchil3038.t1|Name=Gchil3038.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2793bp|location=Sequence derived from alignment at tig00000106_pilon:1308867..1311659+ (Gracilaria chilensis NLEC103_M9 male) ATGTCATTCTTTGATATAACTGGACTTATAGGAAGTCTGGTTACACTTCG AGACGAACTAGAGAAGCTCCGAGATCGTTACAAAACTTTAAAGAACGATA TACCCCGTGCCATATCGGAGATCACCTCTTCCATTGCCGAGTGTTCTTCC GATTTAGAGAACCTAAATGCCCAGCTTGCCCATACAAAGCATATTGAAAA CCAGACATTGAAACATATTGAAAGGCAACTTAAACAGATATCTTCACTTT GTTCCGAATCGTTCGAAACACTCTGCGATGTCAATCAGAAACTTAGCTCT CGCCTGTACGGGTTTTTCCGTGCCAGGAAGATTGCTGATTTTACTCTCGG TCCTTTGCAATCCCGTTTCGCAACAGCAGTGGGAGAATTAAACGAACTGA ACGGCATGTTTGCAATTATACATGTTGTTGAAGGCTCAAAAGACGAAGTG GTTTGTAAAATGAATGAACAACACCCAAGAGCGATCGAGGACGTCTTTAA AATTTGGTTCATGGAACGATCTGGACCAGACCTTTCCTGTCAAATGGAGA CTAAGGATTCATATGAGTCGCTCGCGAAAACCGCAGTTCTGGAAGCAGAA TTAAGGAAACAACGTCTTGTAGTTCTCCAAGGTGGGCCTGGTATGGGAAA GACATCAACACTATGTGCGCTTTCTCGGGACAAAGATGTTCGATTTCGAT TTGTGGATGGCGTATACTGGATTTCGTTAGGCATGTCCGCAACTGTTTGC GAGTTTATTCACCGCCTTTCCGGAATAGTCGCATCGGCAGGAGGAAAATC TGTCTCCAAAAGAATCAATAGATCATTAGATGAGGCTATTGCTGTTGAAG AAGCATGCAGCTGGTTTCATGCCAAGCGATTCCTATTTCTGGTCGATGAC GTTTGGAAAGGAAAAGACTTCGATGCAAGTTTTATATCCCTACTTCATGA TCTTGCTCTCGCTGGGTCCGGAAGCGCTCTGGTTTACACCACCCGTCAAG TAGCGATGATTGGAAATAGCATGCACATTCAATTTTGCCCTAGAAATACA TATGGATTGCATTCTCAATCAATACTAAATTCATCAGCAGGTGTAGAAGT CGATGGTGTAATTGCCATGAATCAGACCTACCAAAAACTACTCTGCCTTT GTGGTGGAATCCCATTCCCTTTAGCAGTGGCCGGAAGGGCGTTGTCCAGA TTGTGTCTCAGAAACCTAACGTTCTTAGAGGCTGTGGAAGAATTTGTACG ACGCTTAGATATCGAAGAAGACATTTTGACTGCTCGCATTGATGGATACA GGAGCTTGACCGTCCAATTCAAGGCTGCCCTCGGGATCCTCGACGAAAAC CTCGAAAGCCTCACATGCGTACCGCAAGATAGTTCTTTGGCTAGACTTTA TATTTCCTTAGCTGTGCTTGAGAAACAGCAGTTTGTTCCTCTTTCTATGC TGCAGCATCTCTGGGGTGTATCGTTTCAAAACACTTACGACATAGCAAAT GGGTTTGATGGTGTTGGAATAGCCCATCTGCGATATGAGTCTACGGATAT TGGTGCCATGAAAATTCCTGGTTTGCGTTTGAACGATTTGGCTCATGATT TTATTCTTTCTGAAGGCAAGGGTTTTATTACAACCTTTCATAGAGAACTT GTTGAGTCGTATCGCTCTCTTCTAACCAATGAGTTTCCGCATGGAAAAAT GTTGAGCCCCTGGTGGCAGTTGGTGAACGAACTGAAAGACGAGGGATATT TTTCGCGAAACTTAGTTCGTCACCTTGATGAATCCGGAATGCGCACTGAA CTTGCAATACTATTGTCGCATCCAAACTGGTTTTTTTGTCAGCTCAACTC AGGCGGTATACTCCAGATTGAATCCGAAATCGCTAGGATTTATCCAAATA TCGACGGCGTATTGAATCAGGGCTCTGATGTGCCATTAGTTCTAAATTCA AAGGGGCTTGAATATCTTAGTTGGGCTGCTCGCCTTTCGTGGTCTGCTAT TGCCGACAATCCCAGGGAAAAATGGTTTCAAATCCATGGGCGCTTACTTC ATCTTGCTGAAAATAACAAAACTATCAGCGAATACATACACAAAATCCAA AAACATGCGTCCAAGCCTTGGCTTAAATCAATTCTCAACTGTTTGTCGTC GCCTGGAGGCAAGCGTAAGAGTTTTGTGAGCATTGCGACTGGTTTATGTT GTATGGTGCAACTGAATGATGACGAAGTAGTGTGCGGCTGCGTCGGAGGA GAAGTTTCCATAATCAATCTTCGCTATGCAAAAGTCATGCGGCAGTGGAC CGCGGACCAAAGCAGAATGAATGTATATGAAGTTGTCATTCCTCGTGACC GTAGCGCCCTGCTCCTTGGTTTGTGGGATGGCACGTTTCAGCTCTTGGAA GGACCCAATTGGACTTTGAAGAAGACATTGTCTCGTCATGAGAGTTTTGT TTGTAGCATGGGACTAACAGATGACAAGAGGTTCATGCTCTCTACGGGAT ATGAATTCTCTATGCGGTTATGGGACATGGAAAAGGGCATTCAACTGGGA AACGCGATAAATGCTTATGAAGGAGGATCTGAGGGGATAAATGGAGGAGC AAAACCTTTTTGTATAACAGCTGTCCCTGGCGATCATAGCTTCATTGTGA GCGGTGATGACCACATTCTACGGAGATTGGATGTCCGCTTGGGAACTCCG GGTGAAAATGAAGTAATCATACCTGCATTCAGTTCAACTGACGATCTAAG TTTCTATTTGTCTTCTGCATGGAGGATAGAGTCTGGAGATTGA back to top
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