Gchil3042.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3042.t1
Unique NameGchil3042.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length370
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1321073..1322182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3042Gchil3042Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1321073..1322182 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3042.t1.start1Gchil3042.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1321073..1321075 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3042.t1.CDS1Gchil3042.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1321073..1322182 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3042.t1.exon1Gchil3042.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1321073..1322182 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3042.t1.stop1Gchil3042.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1322180..1322182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3042.t1Gchil3042.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1321073..1322182 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3042.t1 ID=Gchil3042.t1|Name=Gchil3042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=370bp
MPSRRNLQKRSVIALRGLSDLGGMTILHELAARLLLPTTLSASMAADTQL
LFGGLVGVWTAALFAERLRFETMSLIRETEQLPDRWDASIIYTPSFEENE
VDDAVAWLYAFEELDGIAAADLLTALASTANPIMRLRLAEALTKYPVPSN
VSTSVLTVLQQDNNPLVRRAAHNALQTLQTPLLVASSSERTDAVQQSVAC
AEHTYARAVLDRIYEQSANPYSMPFDNDPMPLSVHDGSTSGWLRDLVSER
LEYMGKAALSKPDLRRLHASVVRDADSAQAAIDVDAFNSTNISVPLFEGL
KWSEIHGLCALAMIPAGYELLSLLDGVNLPLRFVGLGWLLAFGGLVAYPQ
SGELWRKLKKLIDDRTISR*
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spliced messenger RNA

>Gchil3042.t1 ID=Gchil3042.t1|Name=Gchil3042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000106_pilon:1321073..1322182+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAGTCGCCGAAACCTACAAAAACGCTCCGTCATTGCCCTAAGAGG
CCTTTCCGACCTGGGCGGTATGACCATTCTGCACGAGCTCGCAGCACGGC
TTCTGCTTCCAACAACGCTCTCAGCCTCCATGGCTGCCGACACTCAGCTC
TTGTTCGGCGGACTTGTCGGTGTATGGACTGCGGCCCTATTTGCGGAGCG
CTTGCGGTTTGAAACAATGTCTCTCATTCGAGAAACAGAACAGCTCCCTG
ATCGTTGGGATGCTTCTATCATATATACACCTTCTTTTGAGGAGAATGAA
GTAGACGATGCCGTGGCGTGGCTGTATGCCTTTGAGGAACTTGATGGTAT
TGCCGCCGCGGATTTACTCACCGCTTTGGCTTCCACGGCCAATCCTATCA
TGCGTCTCCGTCTCGCAGAGGCTCTCACAAAATATCCAGTACCCTCAAAT
GTTTCCACATCGGTTCTCACTGTTTTACAACAAGACAACAACCCTCTCGT
CCGGCGCGCCGCTCACAATGCCTTGCAGACACTGCAAACGCCCTTACTCG
TTGCATCCTCTTCGGAGAGAACCGACGCTGTACAACAATCAGTCGCATGT
GCCGAACATACATACGCGCGCGCTGTTTTGGACAGAATCTACGAACAATC
TGCCAATCCGTACTCGATGCCATTCGACAATGATCCTATGCCACTTTCCG
TGCATGATGGCTCCACCTCAGGATGGCTTCGAGATCTCGTGTCTGAGAGA
TTGGAATACATGGGCAAGGCTGCGCTTTCAAAACCTGACCTCCGTCGTTT
GCATGCATCCGTTGTTCGAGATGCCGATAGTGCACAAGCTGCAATTGATG
TCGATGCATTCAACTCGACAAATATTAGCGTTCCCTTATTTGAGGGTCTC
AAATGGTCAGAGATACATGGGCTATGTGCGCTCGCAATGATTCCCGCGGG
ATATGAGCTACTTTCTTTACTTGACGGTGTCAATCTTCCGCTTCGATTTG
TTGGGCTTGGATGGCTTCTCGCGTTTGGCGGTTTGGTAGCTTATCCTCAG
AGTGGGGAATTGTGGCGAAAGCTCAAGAAGCTTATCGATGACAGAACGAT
TTCGAGATGA
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protein sequence of Gchil3042.t1

>Gchil3042.t1 ID=Gchil3042.t1|Name=Gchil3042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=370bp
MPSRRNLQKRSVIALRGLSDLGGMTILHELAARLLLPTTLSASMAADTQL
LFGGLVGVWTAALFAERLRFETMSLIRETEQLPDRWDASIIYTPSFEENE
VDDAVAWLYAFEELDGIAAADLLTALASTANPIMRLRLAEALTKYPVPSN
VSTSVLTVLQQDNNPLVRRAAHNALQTLQTPLLVASSSERTDAVQQSVAC
AEHTYARAVLDRIYEQSANPYSMPFDNDPMPLSVHDGSTSGWLRDLVSER
LEYMGKAALSKPDLRRLHASVVRDADSAQAAIDVDAFNSTNISVPLFEGL
KWSEIHGLCALAMIPAGYELLSLLDGVNLPLRFVGLGWLLAFGGLVAYPQ
SGELWRKLKKLIDDRTISR*
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mRNA from alignment at tig00000106_pilon:1321073..1322182+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3042.t1 ID=Gchil3042.t1|Name=Gchil3042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000106_pilon:1321073..1322182+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCAGTCGCCGAAACCTACAAAAACGCTCCGTCATTGCCCTAAGAGG
CCTTTCCGACCTGGGCGGTATGACCATTCTGCACGAGCTCGCAGCACGGC
TTCTGCTTCCAACAACGCTCTCAGCCTCCATGGCTGCCGACACTCAGCTC
TTGTTCGGCGGACTTGTCGGTGTATGGACTGCGGCCCTATTTGCGGAGCG
CTTGCGGTTTGAAACAATGTCTCTCATTCGAGAAACAGAACAGCTCCCTG
ATCGTTGGGATGCTTCTATCATATATACACCTTCTTTTGAGGAGAATGAA
GTAGACGATGCCGTGGCGTGGCTGTATGCCTTTGAGGAACTTGATGGTAT
TGCCGCCGCGGATTTACTCACCGCTTTGGCTTCCACGGCCAATCCTATCA
TGCGTCTCCGTCTCGCAGAGGCTCTCACAAAATATCCAGTACCCTCAAAT
GTTTCCACATCGGTTCTCACTGTTTTACAACAAGACAACAACCCTCTCGT
CCGGCGCGCCGCTCACAATGCCTTGCAGACACTGCAAACGCCCTTACTCG
TTGCATCCTCTTCGGAGAGAACCGACGCTGTACAACAATCAGTCGCATGT
GCCGAACATACATACGCGCGCGCTGTTTTGGACAGAATCTACGAACAATC
TGCCAATCCGTACTCGATGCCATTCGACAATGATCCTATGCCACTTTCCG
TGCATGATGGCTCCACCTCAGGATGGCTTCGAGATCTCGTGTCTGAGAGA
TTGGAATACATGGGCAAGGCTGCGCTTTCAAAACCTGACCTCCGTCGTTT
GCATGCATCCGTTGTTCGAGATGCCGATAGTGCACAAGCTGCAATTGATG
TCGATGCATTCAACTCGACAAATATTAGCGTTCCCTTATTTGAGGGTCTC
AAATGGTCAGAGATACATGGGCTATGTGCGCTCGCAATGATTCCCGCGGG
ATATGAGCTACTTTCTTTACTTGACGGTGTCAATCTTCCGCTTCGATTTG
TTGGGCTTGGATGGCTTCTCGCGTTTGGCGGTTTGGTAGCTTATCCTCAG
AGTGGGGAATTGTGGCGAAAGCTCAAGAAGCTTATCGATGACAGAACGAT
TTCGAGATGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:1321073..1322182+

>Gchil3042.t1 ID=Gchil3042.t1|Name=Gchil3042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1110bp|location=Sequence derived from alignment at tig00000106_pilon:1321073..1322182+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCAGTCGCCGAAACCTACAAAAACGCTCCGTCATTGCCCTAAGAGG
CCTTTCCGACCTGGGCGGTATGACCATTCTGCACGAGCTCGCAGCACGGC
TTCTGCTTCCAACAACGCTCTCAGCCTCCATGGCTGCCGACACTCAGCTC
TTGTTCGGCGGACTTGTCGGTGTATGGACTGCGGCCCTATTTGCGGAGCG
CTTGCGGTTTGAAACAATGTCTCTCATTCGAGAAACAGAACAGCTCCCTG
ATCGTTGGGATGCTTCTATCATATATACACCTTCTTTTGAGGAGAATGAA
GTAGACGATGCCGTGGCGTGGCTGTATGCCTTTGAGGAACTTGATGGTAT
TGCCGCCGCGGATTTACTCACCGCTTTGGCTTCCACGGCCAATCCTATCA
TGCGTCTCCGTCTCGCAGAGGCTCTCACAAAATATCCAGTACCCTCAAAT
GTTTCCACATCGGTTCTCACTGTTTTACAACAAGACAACAACCCTCTCGT
CCGGCGCGCCGCTCACAATGCCTTGCAGACACTGCAAACGCCCTTACTCG
TTGCATCCTCTTCGGAGAGAACCGACGCTGTACAACAATCAGTCGCATGT
GCCGAACATACATACGCGCGCGCTGTTTTGGACAGAATCTACGAACAATC
TGCCAATCCGTACTCGATGCCATTCGACAATGATCCTATGCCACTTTCCG
TGCATGATGGCTCCACCTCAGGATGGCTTCGAGATCTCGTGTCTGAGAGA
TTGGAATACATGGGCAAGGCTGCGCTTTCAAAACCTGACCTCCGTCGTTT
GCATGCATCCGTTGTTCGAGATGCCGATAGTGCACAAGCTGCAATTGATG
TCGATGCATTCAACTCGACAAATATTAGCGTTCCCTTATTTGAGGGTCTC
AAATGGTCAGAGATACATGGGCTATGTGCGCTCGCAATGATTCCCGCGGG
ATATGAGCTACTTTCTTTACTTGACGGTGTCAATCTTCCGCTTCGATTTG
TTGGGCTTGGATGGCTTCTCGCGTTTGGCGGTTTGGTAGCTTATCCTCAG
AGTGGGGAATTGTGGCGAAAGCTCAAGAAGCTTATCGATGACAGAACGAT
TTCGAGATGA
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