Gchil3042.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil3042.t1
Unique NameGchil3042.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length370
Homology
BLAST of Gchil3042.t1 vs. uniprot
Match: A0A2V3IGS2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGS2_9FLOR)

HSP 1 Score: 464 bits (1193), Expect = 1.220e-160
Identity = 239/366 (65.30%), Postives = 290/366 (79.23%), Query Frame = 0
Query:    3 SRRNLQKRSVIALRGLSDLGGMTILHELAARLLLPTTLSASMAADTQLLFGGLVGVWTAALFAERLRFETMSLIRETEQLPDRWDASIIYTPSFEENEVDDAVAWLYAFEELDGIAAADLLTALASTANPIMRLRLAEALTKYPVPSNVSTSVLTVLQQDNNPLVRRAAHNALQTLQTPLLVASSSERTDAVQQSVACAEHTYARAVLDRIYEQSANPYSMPFDNDPMPLSVHDGSTSGWLRDLVSERLEYMGKAALSKPDLRRLHASVVRDADSAQAAIDVDAFNSTNISVPLFEGLKWSEIHGLCALAMIPAGYELLSLLDGVNLPLRFVGLGWLLAFGGLVAYPQSGELWRKLKKLIDDRTIS 368
            S+ NL+KRSVIALRGLSDLGGMT+LHE++AR+LLPTT +AS AADTQLL GGL+GVWTAALFAER+RFET SLIRE+EQLPDRWD+SII+TPS E+ EV DAVAWLYAF+ELDGIAAADLL  +A+T +P MR+RLAEALT YPV SN+ TSVL+ LQQD +PLVR AAH AL+T Q+P   +     T+ +QQ+V  A+  + RAVLDR++EQ    Y    D   + +   + S   WLR+LV+ER+ YM  AALS PDL +L ASVV   D A+  +DV   NS  ++VPLFEGLKWSEIHGL  LA++PAGYELLS+LDGV+LPLRFVGLGWLL  GG++AYPQSG +WR+LKKLIDDR +S
Sbjct:   11 SQANLEKRSVIALRGLSDLGGMTVLHEMSARILLPTTAAASGAADTQLLLGGLIGVWTAALFAERMRFETHSLIRESEQLPDRWDSSIIHTPSLEDTEVADAVAWLYAFDELDGIAAADLLRTVAATGSPKMRIRLAEALTAYPVRSNICTSVLSSLQQDGHPLVREAAHTALKTFQSPPSFSPVPTSTEPLQQAVLEADEQHVRAVLDRLFEQPT--YPTLDDQQLVHIPADEQSNHAWLRELVAERVNYMRDAALSTPDLCQLRASVVGSHDHAEHVVDVSQLNSAKVNVPLFEGLKWSEIHGLATLALLPAGYELLSVLDGVDLPLRFVGLGWLLTVGGMIAYPQSGGIWRRLKKLIDDRVVS 374          
BLAST of Gchil3042.t1 vs. uniprot
Match: M2WUV1_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WUV1_GALSU)

HSP 1 Score: 86.3 bits (212), Expect = 5.760e-15
Identity = 90/367 (24.52%), Postives = 156/367 (42.51%), Query Frame = 0
Query:    8 QKRSVIALRGLSDLGGMTILHELAARLLLPTTLSAS--MAADTQLLFGGLVGVWTAALF--------AERLRFETMSLIRETEQLPDRWDASIIYTP---SFEENEVDDAVAWLYAFEELDGIAAADLLTALASTANPIMRLRLAEALTKYPVPSNVSTSVLTVL-QQDNNPLVRRAAHNALQTLQTPLLVASSSERTDAVQQSVACAEHTYARAVLDRIYEQSANPYSMPFDNDPMPLSVHDGSTSGWLRDLVSERLEYMGKAALSKPDLRRLHASVVRDADSAQAAIDVDAFNSTNISVPLFEGLKWSEIHGLCALAMIPAGYELLSLLDGVNLPLRFVGLGWLLAFGGLVAYPQSGELWRKLKK 360
            +K+S+ A R +SD    TI+ E  +R L  +   AS  +   ++L  G L+G+++            AE  R +   L   + QL   WD S        SF+  E+++ V W    EEL+G  A      +  + +   R+ LA  L +    SN+    L  L  +D+N LVR  A N+++ L    ++ S           +   E+    ++L+   EQS    S+ ++  P                  S      GK+ +++                + +  ++D+F   + +   F+ +   +I   C L+ +  G +   L   V+LP RFV LGW+   GGL+ YP+SG LW+ L++
Sbjct:   79 KKQSLYAFRAVSDSAFSTIIFEFFSRGLRVSCFQASPLLFVGSELFVGSLLGIFSVVANIIGIVERRAEESRKQQQFLENASAQLVADWDFSDSVEADLTSFDTFEIEEMVRWFEVLEELEGPGAMQFFQEVLLSDSVEKRVTLARCLGRCQTRSNILLCTLQQLAMKDSNSLVRNVARNSIRELIRHNVIPSPP---------LHLPENLSVFSMLNE--EQSLRELSISYEKIP------------------SGVFHVSGKSRITE----------------SNSDANLDSFLENSFTP--FDRMDVLDIVTFCGLSSVIMGLQFYCLSHSVDLPFRFVALGWVFGVGGLIVYPRSGRLWQYLRR 398          
The following BLAST results are available for this feature:
BLAST of Gchil3042.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IGS2_9FLOR1.220e-16065.30Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
M2WUV1_GALSU5.760e-1524.52Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 94..209
e-value: 2.0E-5
score: 26.2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 37..47
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 48..65
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 349..369
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..36
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 325..329
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 66..304
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 330..348
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 305..324
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 118..205

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1321073..1322182 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3042.t1Gchil3042.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000106_pilon 1321073..1322182 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil3042.t1 ID=Gchil3042.t1|Name=Gchil3042.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=370bp
MPSRRNLQKRSVIALRGLSDLGGMTILHELAARLLLPTTLSASMAADTQL
LFGGLVGVWTAALFAERLRFETMSLIRETEQLPDRWDASIIYTPSFEENE
VDDAVAWLYAFEELDGIAAADLLTALASTANPIMRLRLAEALTKYPVPSN
VSTSVLTVLQQDNNPLVRRAAHNALQTLQTPLLVASSSERTDAVQQSVAC
AEHTYARAVLDRIYEQSANPYSMPFDNDPMPLSVHDGSTSGWLRDLVSER
LEYMGKAALSKPDLRRLHASVVRDADSAQAAIDVDAFNSTNISVPLFEGL
KWSEIHGLCALAMIPAGYELLSLLDGVNLPLRFVGLGWLLAFGGLVAYPQ
SGELWRKLKKLIDDRTISR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold