Gchil2964.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2964.t1
Unique NameGchil2964.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length346
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:515027..516252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704063.1
PFAMsPDZ_2,Trypsin_2
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006091,GO:0006508,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009507,GO:0009526,GO:0009532,GO:0009533,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009658,GO:0009765,GO:0009941,GO:0009987,GO:0010206,GO:0015979,GO:0016020,GO:0016043,GO:0016787,GO:0017171,GO:0019538,GO:0019684,GO:0030091,GO:0030163,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031981,GO:0031984,GO:0034357,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0070011,GO:0070013,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue1.75e-88
EggNOG OGsCOG0265@1|root,KOG1320@2759|Eukaryota
Descriptionserine-type endopeptidase activity
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2964Gchil2964Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 515027..516252 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2964.t1Gchil2964.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 515027..516252 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2964.t1.stop1Gchil2964.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 515027..515029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2964.t1.CDS1Gchil2964.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 515027..515952 -
Gchil2964.t1.CDS2Gchil2964.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 516048..516102 -
Gchil2964.t1.CDS3Gchil2964.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 516196..516252 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2964.t1.exon1Gchil2964.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 515027..515952 -
Gchil2964.t1.exon2Gchil2964.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 516048..516102 -
Gchil2964.t1.exon3Gchil2964.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 516196..516252 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2964.t1.intron1Gchil2964.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 515953..516047 -
Gchil2964.t1.intron2Gchil2964.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 516103..516195 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2964.t1.start1Gchil2964.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 516250..516252 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2964.t1 ID=Gchil2964.t1|Name=Gchil2964.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=346bp
MQHYVHGQDELLAVQIDAAINSGSSGGPVINEQLQVIGIAFQSVDPSQAD
SVGYFIPFSVVNHFLDDIEQHQKYTGFPFCGFHWQKMENPYIRRAYGMQA
CTSGILVKWVAETVDAARVLKKGDVVTHIDGISISNAGTIPFRHGERIDL
DYMVTNKFSDDTVTVTFQRGGKEHEESYKLSRMQEHCLVPIHDARHLERR
QPEYMICGGLVFQSLSEPFLRSVYGRCWLFEAPVPLIELYYNGTKTRAGR
VEVVLLTQILSASCTSGYENDSAPEIKVLLRLNTQPINSLKHLASLVDAC
PREVRDLRFELDRDDTIIIDRRAAFGEEREILATYCIPAARSLGS*
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spliced messenger RNA

>Gchil2964.t1 ID=Gchil2964.t1|Name=Gchil2964.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1038bp|location=Sequence derived from alignment at tig00000106_pilon:515027..516252- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCATTACGTTCACGGCCAGGATGAATTGCTCGCTGTTCAGATTGA
TGCGGCCATTAACTCGGGTAGTAGCGGAGGCCCAGTGATTAACGAACAAT
TGCAAGTAATCGGGATTGCCTTCCAATCAGTTGACCCGTCTCAGGCGGAT
TCCGTTGGTTACTTCATTCCGTTCTCTGTCGTCAACCATTTCCTCGATGA
TATAGAGCAACACCAAAAATATACAGGGTTTCCATTTTGTGGGTTTCATT
GGCAAAAAATGGAGAACCCATATATCCGTCGAGCTTATGGAATGCAGGCT
TGTACATCAGGAATCCTCGTGAAGTGGGTTGCAGAGACAGTCGATGCAGC
TCGAGTCCTTAAGAAGGGCGATGTTGTAACACATATAGATGGAATCAGTA
TATCAAACGCTGGGACGATACCTTTCCGGCATGGAGAAAGAATTGATCTT
GATTATATGGTGACAAACAAATTCTCTGATGACACCGTTACCGTAACGTT
CCAGAGGGGTGGAAAAGAGCATGAAGAATCGTACAAACTGTCCAGAATGC
AAGAACATTGTCTTGTCCCCATTCACGATGCTCGTCACCTGGAAAGGCGG
CAACCCGAATATATGATCTGTGGAGGTCTCGTATTCCAATCACTCAGTGA
ACCGTTTCTGCGATCTGTTTACGGGCGGTGTTGGCTGTTTGAAGCTCCGG
TTCCTTTGATAGAGCTCTATTACAATGGAACCAAGACACGGGCAGGACGT
GTCGAAGTGGTGCTGCTTACACAGATCTTATCGGCAAGCTGTACCAGCGG
GTATGAGAACGATAGTGCACCTGAAATTAAGGTGTTGCTGAGGCTGAACA
CCCAACCAATTAACAGCCTGAAGCACCTTGCAAGCTTGGTAGATGCTTGT
CCTCGTGAAGTCCGGGATCTTCGCTTTGAGCTCGACAGGGATGATACTAT
AATCATCGACAGACGCGCCGCATTTGGCGAAGAGCGCGAAATATTGGCGA
CATATTGCATACCGGCCGCACGCTCATTGGGATCATAA
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protein sequence of Gchil2964.t1

>Gchil2964.t1 ID=Gchil2964.t1|Name=Gchil2964.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=346bp
MQHYVHGQDELLAVQIDAAINSGSSGGPVINEQLQVIGIAFQSVDPSQAD
SVGYFIPFSVVNHFLDDIEQHQKYTGFPFCGFHWQKMENPYIRRAYGMQA
CTSGILVKWVAETVDAARVLKKGDVVTHIDGISISNAGTIPFRHGERIDL
DYMVTNKFSDDTVTVTFQRGGKEHEESYKLSRMQEHCLVPIHDARHLERR
QPEYMICGGLVFQSLSEPFLRSVYGRCWLFEAPVPLIELYYNGTKTRAGR
VEVVLLTQILSASCTSGYENDSAPEIKVLLRLNTQPINSLKHLASLVDAC
PREVRDLRFELDRDDTIIIDRRAAFGEEREILATYCIPAARSLGS*
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mRNA from alignment at tig00000106_pilon:515027..516252-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2964.t1 ID=Gchil2964.t1|Name=Gchil2964.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1226bp|location=Sequence derived from alignment at tig00000106_pilon:515027..516252- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCATTACGTTCACGGCCAGGATGAATTGCTCGCTGTTCAGATTGA
TGCGGCCGTAAGTATTTTGGACTTCTTAACGCACCAGCGATTTTGAATAG
CCCATGGTTCTAACCCTGCTCGACAACGTTTTTCTATCGTAACCACGCAG
ATTAACTCGGGTAGTAGCGGAGGCCCAGTGATTAACGAACAATTGCAAGT
AATCGGTAATACATCATTTCTCCTTAACCATCATGATGACAATGCGCACA
GCCACTTGTTTTAGAGTTCTAACATCGAAGCTCTTTTTGCATCTTTGCAG
GGATTGCCTTCCAATCAGTTGACCCGTCTCAGGCGGATTCCGTTGGTTAC
TTCATTCCGTTCTCTGTCGTCAACCATTTCCTCGATGATATAGAGCAACA
CCAAAAATATACAGGGTTTCCATTTTGTGGGTTTCATTGGCAAAAAATGG
AGAACCCATATATCCGTCGAGCTTATGGAATGCAGGCTTGTACATCAGGA
ATCCTCGTGAAGTGGGTTGCAGAGACAGTCGATGCAGCTCGAGTCCTTAA
GAAGGGCGATGTTGTAACACATATAGATGGAATCAGTATATCAAACGCTG
GGACGATACCTTTCCGGCATGGAGAAAGAATTGATCTTGATTATATGGTG
ACAAACAAATTCTCTGATGACACCGTTACCGTAACGTTCCAGAGGGGTGG
AAAAGAGCATGAAGAATCGTACAAACTGTCCAGAATGCAAGAACATTGTC
TTGTCCCCATTCACGATGCTCGTCACCTGGAAAGGCGGCAACCCGAATAT
ATGATCTGTGGAGGTCTCGTATTCCAATCACTCAGTGAACCGTTTCTGCG
ATCTGTTTACGGGCGGTGTTGGCTGTTTGAAGCTCCGGTTCCTTTGATAG
AGCTCTATTACAATGGAACCAAGACACGGGCAGGACGTGTCGAAGTGGTG
CTGCTTACACAGATCTTATCGGCAAGCTGTACCAGCGGGTATGAGAACGA
TAGTGCACCTGAAATTAAGGTGTTGCTGAGGCTGAACACCCAACCAATTA
ACAGCCTGAAGCACCTTGCAAGCTTGGTAGATGCTTGTCCTCGTGAAGTC
CGGGATCTTCGCTTTGAGCTCGACAGGGATGATACTATAATCATCGACAG
ACGCGCCGCATTTGGCGAAGAGCGCGAAATATTGGCGACATATTGCATAC
CGGCCGCACGCTCATTGGGATCATAA
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Coding sequence (CDS) from alignment at tig00000106_pilon:515027..516252-

>Gchil2964.t1 ID=Gchil2964.t1|Name=Gchil2964.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1038bp|location=Sequence derived from alignment at tig00000106_pilon:515027..516252- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCATTACGTTCACGGCCAGGATGAATTGCTCGCTGTTCAGATTGA
TGCGGCCATTAACTCGGGTAGTAGCGGAGGCCCAGTGATTAACGAACAAT
TGCAAGTAATCGGGATTGCCTTCCAATCAGTTGACCCGTCTCAGGCGGAT
TCCGTTGGTTACTTCATTCCGTTCTCTGTCGTCAACCATTTCCTCGATGA
TATAGAGCAACACCAAAAATATACAGGGTTTCCATTTTGTGGGTTTCATT
GGCAAAAAATGGAGAACCCATATATCCGTCGAGCTTATGGAATGCAGGCT
TGTACATCAGGAATCCTCGTGAAGTGGGTTGCAGAGACAGTCGATGCAGC
TCGAGTCCTTAAGAAGGGCGATGTTGTAACACATATAGATGGAATCAGTA
TATCAAACGCTGGGACGATACCTTTCCGGCATGGAGAAAGAATTGATCTT
GATTATATGGTGACAAACAAATTCTCTGATGACACCGTTACCGTAACGTT
CCAGAGGGGTGGAAAAGAGCATGAAGAATCGTACAAACTGTCCAGAATGC
AAGAACATTGTCTTGTCCCCATTCACGATGCTCGTCACCTGGAAAGGCGG
CAACCCGAATATATGATCTGTGGAGGTCTCGTATTCCAATCACTCAGTGA
ACCGTTTCTGCGATCTGTTTACGGGCGGTGTTGGCTGTTTGAAGCTCCGG
TTCCTTTGATAGAGCTCTATTACAATGGAACCAAGACACGGGCAGGACGT
GTCGAAGTGGTGCTGCTTACACAGATCTTATCGGCAAGCTGTACCAGCGG
GTATGAGAACGATAGTGCACCTGAAATTAAGGTGTTGCTGAGGCTGAACA
CCCAACCAATTAACAGCCTGAAGCACCTTGCAAGCTTGGTAGATGCTTGT
CCTCGTGAAGTCCGGGATCTTCGCTTTGAGCTCGACAGGGATGATACTAT
AATCATCGACAGACGCGCCGCATTTGGCGAAGAGCGCGAAATATTGGCGA
CATATTGCATACCGGCCGCACGCTCATTGGGATCATAA
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