Gchil2996.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2996.t1
Unique NameGchil2996.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length433
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:807334..808632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2996Gchil2996Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 807334..808632 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2996.t1.start1Gchil2996.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 807334..807336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2996.t1.CDS1Gchil2996.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 807334..808632 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2996.t1.exon1Gchil2996.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 807334..808632 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2996.t1.stop1Gchil2996.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 808630..808632 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2996.t1Gchil2996.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 807334..808632 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2996.t1 ID=Gchil2996.t1|Name=Gchil2996.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=433bp
MVDPMIVLGAAATAKLTGDRLVREFVEYIRRNTRVREHALRTPIPLQRNR
QRLSRTMKQSATTGSSSSRKRQPSRRSKRLSLLTDADLEAELENRRRRRA
KERSNYSRAMPSDKLATLESELLRLRRELSRIDGSNAVSRSQPLRPVTSN
VPRLSPCIPNTSLSPPSQTTHIIPTTPLPPSSVTPALAAPSKAPRSGGPP
PPPPPPPPMASGNVSSSIDPERQKQEKIERQKRREAKKKEREEAQSKQKL
TLADIIRSAGPDPTRHLKPASKKAADEEREKYEQELKEREEREKTEEQQR
VEAEKKALLDMSKRLSPSPVQGDKGKSMEKEISTDEESSRGKEKIITLIE
DKQEQNDWSKNSGKPKDTPAKTTKQEMDKTKRDVGVSIEEKRISDSTARS
EARGSSTRVTKDEKSSGTAPSTKRTATSTKPP*
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spliced messenger RNA

>Gchil2996.t1 ID=Gchil2996.t1|Name=Gchil2996.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1299bp|location=Sequence derived from alignment at tig00000106_pilon:807334..808632+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGACCCCATGATTGTTCTGGGCGCCGCTGCTACCGCCAAGCTGAC
TGGTGATCGTTTGGTCCGAGAATTCGTCGAGTATATCCGTCGCAACACTC
GGGTGCGCGAGCATGCTCTGCGTACTCCCATTCCTCTCCAGCGAAACCGT
CAACGTCTCTCTCGCACCATGAAGCAATCAGCCACAACTGGCTCTTCCTC
CAGCAGAAAACGACAACCGTCTCGTCGCTCAAAGAGACTTTCCCTTCTCA
CGGACGCTGACCTTGAGGCAGAGCTTGAGAATCGCCGCCGCCGCCGTGCT
AAAGAGCGTTCTAATTATTCCCGTGCAATGCCGTCTGACAAGCTGGCGAC
TTTGGAATCTGAATTGCTTCGCCTACGTCGCGAGCTGTCCCGCATCGATG
GCTCCAACGCTGTATCTCGCTCGCAGCCACTGCGTCCAGTTACTAGCAAT
GTACCACGTCTTTCGCCTTGCATCCCAAACACCTCCTTATCGCCGCCATC
ACAAACAACTCACATAATCCCAACGACACCACTACCGCCATCCTCAGTGA
CCCCGGCCCTCGCGGCTCCTTCTAAAGCTCCCCGTTCCGGGGGTCCACCT
CCACCCCCGCCTCCGCCTCCGCCGATGGCTAGCGGAAATGTATCTTCTTC
AATTGATCCAGAACGCCAAAAACAAGAGAAGATAGAACGACAAAAAAGAC
GTGAAGCAAAGAAAAAAGAGCGGGAAGAAGCGCAATCCAAACAGAAGCTG
ACGCTTGCAGATATTATTCGCTCTGCTGGACCAGACCCTACACGGCACCT
CAAACCAGCGTCAAAGAAGGCTGCTGACGAAGAGCGAGAAAAATATGAGC
AGGAATTGAAGGAAAGAGAAGAGAGGGAAAAAACAGAAGAACAGCAGCGA
GTCGAAGCTGAGAAGAAAGCACTCTTGGACATGAGCAAACGATTATCCCC
GAGTCCGGTTCAAGGAGATAAGGGGAAATCTATGGAAAAAGAAATCTCGA
CTGATGAGGAGTCTTCCAGGGGAAAGGAAAAAATCATAACACTCATTGAA
GACAAACAAGAACAGAATGACTGGTCGAAAAACAGCGGAAAGCCAAAGGA
TACGCCAGCTAAAACAACAAAGCAAGAGATGGATAAAACGAAGAGAGATG
TAGGTGTTTCAATAGAAGAAAAGAGAATCAGTGACTCCACCGCTAGATCA
GAGGCACGTGGTTCGTCCACAAGGGTTACAAAGGATGAAAAAAGCTCAGG
AACTGCTCCATCTACGAAGAGGACGGCGACTTCCACCAAACCCCCGTAG
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protein sequence of Gchil2996.t1

>Gchil2996.t1 ID=Gchil2996.t1|Name=Gchil2996.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=433bp
MVDPMIVLGAAATAKLTGDRLVREFVEYIRRNTRVREHALRTPIPLQRNR
QRLSRTMKQSATTGSSSSRKRQPSRRSKRLSLLTDADLEAELENRRRRRA
KERSNYSRAMPSDKLATLESELLRLRRELSRIDGSNAVSRSQPLRPVTSN
VPRLSPCIPNTSLSPPSQTTHIIPTTPLPPSSVTPALAAPSKAPRSGGPP
PPPPPPPPMASGNVSSSIDPERQKQEKIERQKRREAKKKEREEAQSKQKL
TLADIIRSAGPDPTRHLKPASKKAADEEREKYEQELKEREEREKTEEQQR
VEAEKKALLDMSKRLSPSPVQGDKGKSMEKEISTDEESSRGKEKIITLIE
DKQEQNDWSKNSGKPKDTPAKTTKQEMDKTKRDVGVSIEEKRISDSTARS
EARGSSTRVTKDEKSSGTAPSTKRTATSTKPP*
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mRNA from alignment at tig00000106_pilon:807334..808632+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2996.t1 ID=Gchil2996.t1|Name=Gchil2996.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1299bp|location=Sequence derived from alignment at tig00000106_pilon:807334..808632+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGACCCCATGATTGTTCTGGGCGCCGCTGCTACCGCCAAGCTGAC
TGGTGATCGTTTGGTCCGAGAATTCGTCGAGTATATCCGTCGCAACACTC
GGGTGCGCGAGCATGCTCTGCGTACTCCCATTCCTCTCCAGCGAAACCGT
CAACGTCTCTCTCGCACCATGAAGCAATCAGCCACAACTGGCTCTTCCTC
CAGCAGAAAACGACAACCGTCTCGTCGCTCAAAGAGACTTTCCCTTCTCA
CGGACGCTGACCTTGAGGCAGAGCTTGAGAATCGCCGCCGCCGCCGTGCT
AAAGAGCGTTCTAATTATTCCCGTGCAATGCCGTCTGACAAGCTGGCGAC
TTTGGAATCTGAATTGCTTCGCCTACGTCGCGAGCTGTCCCGCATCGATG
GCTCCAACGCTGTATCTCGCTCGCAGCCACTGCGTCCAGTTACTAGCAAT
GTACCACGTCTTTCGCCTTGCATCCCAAACACCTCCTTATCGCCGCCATC
ACAAACAACTCACATAATCCCAACGACACCACTACCGCCATCCTCAGTGA
CCCCGGCCCTCGCGGCTCCTTCTAAAGCTCCCCGTTCCGGGGGTCCACCT
CCACCCCCGCCTCCGCCTCCGCCGATGGCTAGCGGAAATGTATCTTCTTC
AATTGATCCAGAACGCCAAAAACAAGAGAAGATAGAACGACAAAAAAGAC
GTGAAGCAAAGAAAAAAGAGCGGGAAGAAGCGCAATCCAAACAGAAGCTG
ACGCTTGCAGATATTATTCGCTCTGCTGGACCAGACCCTACACGGCACCT
CAAACCAGCGTCAAAGAAGGCTGCTGACGAAGAGCGAGAAAAATATGAGC
AGGAATTGAAGGAAAGAGAAGAGAGGGAAAAAACAGAAGAACAGCAGCGA
GTCGAAGCTGAGAAGAAAGCACTCTTGGACATGAGCAAACGATTATCCCC
GAGTCCGGTTCAAGGAGATAAGGGGAAATCTATGGAAAAAGAAATCTCGA
CTGATGAGGAGTCTTCCAGGGGAAAGGAAAAAATCATAACACTCATTGAA
GACAAACAAGAACAGAATGACTGGTCGAAAAACAGCGGAAAGCCAAAGGA
TACGCCAGCTAAAACAACAAAGCAAGAGATGGATAAAACGAAGAGAGATG
TAGGTGTTTCAATAGAAGAAAAGAGAATCAGTGACTCCACCGCTAGATCA
GAGGCACGTGGTTCGTCCACAAGGGTTACAAAGGATGAAAAAAGCTCAGG
AACTGCTCCATCTACGAAGAGGACGGCGACTTCCACCAAACCCCCGTAG
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Coding sequence (CDS) from alignment at tig00000106_pilon:807334..808632+

>Gchil2996.t1 ID=Gchil2996.t1|Name=Gchil2996.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1299bp|location=Sequence derived from alignment at tig00000106_pilon:807334..808632+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGACCCCATGATTGTTCTGGGCGCCGCTGCTACCGCCAAGCTGAC
TGGTGATCGTTTGGTCCGAGAATTCGTCGAGTATATCCGTCGCAACACTC
GGGTGCGCGAGCATGCTCTGCGTACTCCCATTCCTCTCCAGCGAAACCGT
CAACGTCTCTCTCGCACCATGAAGCAATCAGCCACAACTGGCTCTTCCTC
CAGCAGAAAACGACAACCGTCTCGTCGCTCAAAGAGACTTTCCCTTCTCA
CGGACGCTGACCTTGAGGCAGAGCTTGAGAATCGCCGCCGCCGCCGTGCT
AAAGAGCGTTCTAATTATTCCCGTGCAATGCCGTCTGACAAGCTGGCGAC
TTTGGAATCTGAATTGCTTCGCCTACGTCGCGAGCTGTCCCGCATCGATG
GCTCCAACGCTGTATCTCGCTCGCAGCCACTGCGTCCAGTTACTAGCAAT
GTACCACGTCTTTCGCCTTGCATCCCAAACACCTCCTTATCGCCGCCATC
ACAAACAACTCACATAATCCCAACGACACCACTACCGCCATCCTCAGTGA
CCCCGGCCCTCGCGGCTCCTTCTAAAGCTCCCCGTTCCGGGGGTCCACCT
CCACCCCCGCCTCCGCCTCCGCCGATGGCTAGCGGAAATGTATCTTCTTC
AATTGATCCAGAACGCCAAAAACAAGAGAAGATAGAACGACAAAAAAGAC
GTGAAGCAAAGAAAAAAGAGCGGGAAGAAGCGCAATCCAAACAGAAGCTG
ACGCTTGCAGATATTATTCGCTCTGCTGGACCAGACCCTACACGGCACCT
CAAACCAGCGTCAAAGAAGGCTGCTGACGAAGAGCGAGAAAAATATGAGC
AGGAATTGAAGGAAAGAGAAGAGAGGGAAAAAACAGAAGAACAGCAGCGA
GTCGAAGCTGAGAAGAAAGCACTCTTGGACATGAGCAAACGATTATCCCC
GAGTCCGGTTCAAGGAGATAAGGGGAAATCTATGGAAAAAGAAATCTCGA
CTGATGAGGAGTCTTCCAGGGGAAAGGAAAAAATCATAACACTCATTGAA
GACAAACAAGAACAGAATGACTGGTCGAAAAACAGCGGAAAGCCAAAGGA
TACGCCAGCTAAAACAACAAAGCAAGAGATGGATAAAACGAAGAGAGATG
TAGGTGTTTCAATAGAAGAAAAGAGAATCAGTGACTCCACCGCTAGATCA
GAGGCACGTGGTTCGTCCACAAGGGTTACAAAGGATGAAAAAAGCTCAGG
AACTGCTCCATCTACGAAGAGGACGGCGACTTCCACCAAACCCCCGTAG
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