Gchil2980.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2980.t1
Unique NameGchil2980.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length577
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:667604..669334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42345.XP_008798021.1
PFAMsABC1
Max annot lvl35493|Streptophyta
KEGG koko:K08869
Evalue3.71e-67
EggNOG OGsCOG0661@1|root,KOG1235@2759|Eukaryota,37NM6@33090|Viridiplantae,3GAIU@35493|Streptophyta,3KUDS@4447|Liliopsida
DescriptionABC1 family
COG categoryS
BRITEko00000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2980Gchil2980Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 667604..669334 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2980.t1.start1Gchil2980.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 667604..667606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2980.t1.CDS1Gchil2980.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 667604..669334 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2980.t1.exon1Gchil2980.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 667604..669334 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2980.t1.stop1Gchil2980.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 669332..669334 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2980.t1Gchil2980.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 667604..669334 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2980.t1 ID=Gchil2980.t1|Name=Gchil2980.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=577bp
MKLARRRRAVAKGVGCAVVAATAAALGVERTPGAADSEWGAVATVAAGAI
ATVRFVRSAGVAAFVMGDYATLFAQHDGRYHSAEYRDARARVDARCADRV
ARLCRTQGAVYVKVAQHVANLRHGGVPHEFRVALRALEDRAAPRPEWQMR
RALARELLPHGGVAAVFSRFDAAPVAAASLAQVHRATLRADGAHVAVKVQ
FPGLEPLIRSDLLTIDVLARVASALFPLFDMRWAVRQFDANLRRELDYSV
EAACAARTAALFGEHERVRVPRVYAQLSTARLLVMQWVDGFRADDVARLR
DAHIDAALVAHTAVDAFAQMTFVHGFVHCDPHAGNLMVLPNATRRGAFEL
YLLDHGLYRELPDAFRHSYCRLWRALVLGDARGVERACVQLRAPQLPPDV
LSIALLNRAWTREHGGEQDGHLRGERLEAARRHATAVALRHSRALRHVPD
ELLLLLKTDALLRSVAAALHVRVNRLKLYARYAVRGLRVRHHHRHQQQQH
QQQQGADVVACAALERGARALWRVVATLARAAALAADVAAIDLRLLLLDA
VSAACRVWRAAVARLAQKTPRRAAAL*
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spliced messenger RNA

>Gchil2980.t1 ID=Gchil2980.t1|Name=Gchil2980.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1731bp|location=Sequence derived from alignment at tig00000106_pilon:667604..669334+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTGGCGAGGCGGAGGAGGGCTGTGGCGAAGGGGGTGGGGTGCGC
AGTGGTGGCGGCGACGGCGGCGGCGCTGGGCGTGGAGCGTACGCCGGGCG
CAGCCGACAGCGAATGGGGCGCGGTGGCGACGGTGGCGGCGGGCGCCATA
GCGACGGTGCGCTTTGTGCGGTCGGCGGGTGTGGCGGCGTTCGTGATGGG
CGACTACGCTACGCTGTTTGCGCAGCACGACGGGCGCTACCACAGCGCCG
AGTACcgcgacgcgcgcgcgcgcgttgacgcgcgctgcgccgaccgcgtg
gcgcgTTTGTGTCGCACACAGGGCGCCGTGTACGTGAAGGTGGCGCAACA
TGTAGCCAATCTGCGGCACGGCGGCGTACCACACGAGTTCCGCGTGGCGC
TACGCGCGCTGGAGGATCGCGCCGCGCCGCGCCCCGAGTGGCAGATGCGA
CGCGCGTTGGCGCGCGAGCTGCTGCCGCACGGCGGCGTGGCGGCTGTGTT
CAGTCGCTTCGACGCAGCGCCCGTGGCGGCCGCGTCGCTGGCGCAGGTGC
ATCGCGCTACGCTGCGCGCCGACGGGGCGCACGTGGCCGTCAAGGTGCAG
TTTCCCGGGTTAGAGCCGCTCATTCGCAGCGACTTGCTGACCATCGACGT
GCTGGCGCGCGTGGCCTCCGCGCTGTTTCCCTTGTTCGACATGCGCTGGG
CCGTGCGTCAGTTCGATGCCAATCTGCGTCGCGAACTGGACTATTCGGTG
GAGGCGGCGTGTGCAGCGCGCACGGCGGCTCTGTTTGGTGAgcacgagcg
cgtgcgcgtgccgcgggtgtacgcgCAGCTCAGCACGGCGCGACTGCTGG
TGATGCAGTGGGTGGATGGGTTTCGCGCCGACGATGTAGCGCGACTGCGC
GACGCGCACATCGATGCGGCACTGGTGGCGCACACGGCCGTGGACGCGTT
TGCGCAGATGACGTTTGTACACGGCTTCGTGCACTGCGACCCGCATGCGG
GCAATCTCATGGTGTTGCCGAACGCCACGCGCCGCGGCGCCTTCGAGCTG
TATCTGCTGGACCACGGGCTGTACCGCGAACTGCCGGACGCGTTCCGTCA
CTCGTACTGCCGACTGTGgcgcgcgctggtgcttggcgacgcgcgcggcg
tggagcgcgcgtgcgtgcaactgcgcgcCCCGCAGCTGCCGCCCGACGTG
CTGTCCATTGCGCTGCTCAACCGTGCGTGGACGCGCGAGCACGGTGGTGA
ACAAGACGGCCATCTACGCGGCGAGCGACTGGAGGCGGCGCGCCGCCACG
CCACCGCCGTGGCTCTGCGTCACTCGCGCGCGCTGCGTCATGTGCCCGAC
GAACTGTTGCTGCTGCTCAAGACGGACGCGCTGCTACGGTCGGTTGCGGC
CGCGCTTCACGTGCGCGTCAATCGTCTCAAGCTATACGCGCGCTACGCCG
TCCGCGGGCTGCGCGTGCGacaccaccaccgccatcaacaacaacagcat
caacaacaacaaGGCGCGGACGTGGTGGCCTGCGCCGCCTTGGAgcgcgg
cgcgcgcgctctgtggcgcgtggtggcgacgctggcgcgcgccgctgcgc
TGGCCGCCGACGTGGCCGCCATCGACCTTCGCCTGCTGCTGCTGGACGCC
GTGTCGGCTGCGTGCCGCGTGTGGCGCGCCGCCGTCGCGCGTCTCGCACA
AAAGACACCCCGCCGCGCCGCCGCGCTGTAA
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protein sequence of Gchil2980.t1

>Gchil2980.t1 ID=Gchil2980.t1|Name=Gchil2980.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=577bp
MKLARRRRAVAKGVGCAVVAATAAALGVERTPGAADSEWGAVATVAAGAI
ATVRFVRSAGVAAFVMGDYATLFAQHDGRYHSAEYRDARARVDARCADRV
ARLCRTQGAVYVKVAQHVANLRHGGVPHEFRVALRALEDRAAPRPEWQMR
RALARELLPHGGVAAVFSRFDAAPVAAASLAQVHRATLRADGAHVAVKVQ
FPGLEPLIRSDLLTIDVLARVASALFPLFDMRWAVRQFDANLRRELDYSV
EAACAARTAALFGEHERVRVPRVYAQLSTARLLVMQWVDGFRADDVARLR
DAHIDAALVAHTAVDAFAQMTFVHGFVHCDPHAGNLMVLPNATRRGAFEL
YLLDHGLYRELPDAFRHSYCRLWRALVLGDARGVERACVQLRAPQLPPDV
LSIALLNRAWTREHGGEQDGHLRGERLEAARRHATAVALRHSRALRHVPD
ELLLLLKTDALLRSVAAALHVRVNRLKLYARYAVRGLRVRHHHRHQQQQH
QQQQGADVVACAALERGARALWRVVATLARAAALAADVAAIDLRLLLLDA
VSAACRVWRAAVARLAQKTPRRAAAL*
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mRNA from alignment at tig00000106_pilon:667604..669334+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2980.t1 ID=Gchil2980.t1|Name=Gchil2980.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1731bp|location=Sequence derived from alignment at tig00000106_pilon:667604..669334+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGTTGGCGAGGCGGAGGAGGGCTGTGGCGAAGGGGGTGGGGTGCGC
AGTGGTGGCGGCGACGGCGGCGGCGCTGGGCGTGGAGCGTACGCCGGGCG
CAGCCGACAGCGAATGGGGCGCGGTGGCGACGGTGGCGGCGGGCGCCATA
GCGACGGTGCGCTTTGTGCGGTCGGCGGGTGTGGCGGCGTTCGTGATGGG
CGACTACGCTACGCTGTTTGCGCAGCACGACGGGCGCTACCACAGCGCCG
AGTACcgcgacgcgcgcgcgcgcgttgacgcgcgctgcgccgaccgcgtg
gcgcgTTTGTGTCGCACACAGGGCGCCGTGTACGTGAAGGTGGCGCAACA
TGTAGCCAATCTGCGGCACGGCGGCGTACCACACGAGTTCCGCGTGGCGC
TACGCGCGCTGGAGGATCGCGCCGCGCCGCGCCCCGAGTGGCAGATGCGA
CGCGCGTTGGCGCGCGAGCTGCTGCCGCACGGCGGCGTGGCGGCTGTGTT
CAGTCGCTTCGACGCAGCGCCCGTGGCGGCCGCGTCGCTGGCGCAGGTGC
ATCGCGCTACGCTGCGCGCCGACGGGGCGCACGTGGCCGTCAAGGTGCAG
TTTCCCGGGTTAGAGCCGCTCATTCGCAGCGACTTGCTGACCATCGACGT
GCTGGCGCGCGTGGCCTCCGCGCTGTTTCCCTTGTTCGACATGCGCTGGG
CCGTGCGTCAGTTCGATGCCAATCTGCGTCGCGAACTGGACTATTCGGTG
GAGGCGGCGTGTGCAGCGCGCACGGCGGCTCTGTTTGGTGAgcacgagcg
cgtgcgcgtgccgcgggtgtacgcgCAGCTCAGCACGGCGCGACTGCTGG
TGATGCAGTGGGTGGATGGGTTTCGCGCCGACGATGTAGCGCGACTGCGC
GACGCGCACATCGATGCGGCACTGGTGGCGCACACGGCCGTGGACGCGTT
TGCGCAGATGACGTTTGTACACGGCTTCGTGCACTGCGACCCGCATGCGG
GCAATCTCATGGTGTTGCCGAACGCCACGCGCCGCGGCGCCTTCGAGCTG
TATCTGCTGGACCACGGGCTGTACCGCGAACTGCCGGACGCGTTCCGTCA
CTCGTACTGCCGACTGTGgcgcgcgctggtgcttggcgacgcgcgcggcg
tggagcgcgcgtgcgtgcaactgcgcgcCCCGCAGCTGCCGCCCGACGTG
CTGTCCATTGCGCTGCTCAACCGTGCGTGGACGCGCGAGCACGGTGGTGA
ACAAGACGGCCATCTACGCGGCGAGCGACTGGAGGCGGCGCGCCGCCACG
CCACCGCCGTGGCTCTGCGTCACTCGCGCGCGCTGCGTCATGTGCCCGAC
GAACTGTTGCTGCTGCTCAAGACGGACGCGCTGCTACGGTCGGTTGCGGC
CGCGCTTCACGTGCGCGTCAATCGTCTCAAGCTATACGCGCGCTACGCCG
TCCGCGGGCTGCGCGTGCGacaccaccaccgccatcaacaacaacagcat
caacaacaacaaGGCGCGGACGTGGTGGCCTGCGCCGCCTTGGAgcgcgg
cgcgcgcgctctgtggcgcgtggtggcgacgctggcgcgcgccgctgcgc
TGGCCGCCGACGTGGCCGCCATCGACCTTCGCCTGCTGCTGCTGGACGCC
GTGTCGGCTGCGTGCCGCGTGTGGCGCGCCGCCGTCGCGCGTCTCGCACA
AAAGACACCCCGCCGCGCCGCCGCGCTGTAA
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Coding sequence (CDS) from alignment at tig00000106_pilon:667604..669334+

>Gchil2980.t1 ID=Gchil2980.t1|Name=Gchil2980.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1731bp|location=Sequence derived from alignment at tig00000106_pilon:667604..669334+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGTTGGCGAGGCGGAGGAGGGCTGTGGCGAAGGGGGTGGGGTGCGC
AGTGGTGGCGGCGACGGCGGCGGCGCTGGGCGTGGAGCGTACGCCGGGCG
CAGCCGACAGCGAATGGGGCGCGGTGGCGACGGTGGCGGCGGGCGCCATA
GCGACGGTGCGCTTTGTGCGGTCGGCGGGTGTGGCGGCGTTCGTGATGGG
CGACTACGCTACGCTGTTTGCGCAGCACGACGGGCGCTACCACAGCGCCG
AGTACcgcgacgcgcgcgcgcgcgttgacgcgcgctgcgccgaccgcgtg
gcgcgTTTGTGTCGCACACAGGGCGCCGTGTACGTGAAGGTGGCGCAACA
TGTAGCCAATCTGCGGCACGGCGGCGTACCACACGAGTTCCGCGTGGCGC
TACGCGCGCTGGAGGATCGCGCCGCGCCGCGCCCCGAGTGGCAGATGCGA
CGCGCGTTGGCGCGCGAGCTGCTGCCGCACGGCGGCGTGGCGGCTGTGTT
CAGTCGCTTCGACGCAGCGCCCGTGGCGGCCGCGTCGCTGGCGCAGGTGC
ATCGCGCTACGCTGCGCGCCGACGGGGCGCACGTGGCCGTCAAGGTGCAG
TTTCCCGGGTTAGAGCCGCTCATTCGCAGCGACTTGCTGACCATCGACGT
GCTGGCGCGCGTGGCCTCCGCGCTGTTTCCCTTGTTCGACATGCGCTGGG
CCGTGCGTCAGTTCGATGCCAATCTGCGTCGCGAACTGGACTATTCGGTG
GAGGCGGCGTGTGCAGCGCGCACGGCGGCTCTGTTTGGTGAgcacgagcg
cgtgcgcgtgccgcgggtgtacgcgCAGCTCAGCACGGCGCGACTGCTGG
TGATGCAGTGGGTGGATGGGTTTCGCGCCGACGATGTAGCGCGACTGCGC
GACGCGCACATCGATGCGGCACTGGTGGCGCACACGGCCGTGGACGCGTT
TGCGCAGATGACGTTTGTACACGGCTTCGTGCACTGCGACCCGCATGCGG
GCAATCTCATGGTGTTGCCGAACGCCACGCGCCGCGGCGCCTTCGAGCTG
TATCTGCTGGACCACGGGCTGTACCGCGAACTGCCGGACGCGTTCCGTCA
CTCGTACTGCCGACTGTGgcgcgcgctggtgcttggcgacgcgcgcggcg
tggagcgcgcgtgcgtgcaactgcgcgcCCCGCAGCTGCCGCCCGACGTG
CTGTCCATTGCGCTGCTCAACCGTGCGTGGACGCGCGAGCACGGTGGTGA
ACAAGACGGCCATCTACGCGGCGAGCGACTGGAGGCGGCGCGCCGCCACG
CCACCGCCGTGGCTCTGCGTCACTCGCGCGCGCTGCGTCATGTGCCCGAC
GAACTGTTGCTGCTGCTCAAGACGGACGCGCTGCTACGGTCGGTTGCGGC
CGCGCTTCACGTGCGCGTCAATCGTCTCAAGCTATACGCGCGCTACGCCG
TCCGCGGGCTGCGCGTGCGacaccaccaccgccatcaacaacaacagcat
caacaacaacaaGGCGCGGACGTGGTGGCCTGCGCCGCCTTGGAgcgcgg
cgcgcgcgctctgtggcgcgtggtggcgacgctggcgcgcgccgctgcgc
TGGCCGCCGACGTGGCCGCCATCGACCTTCGCCTGCTGCTGCTGGACGCC
GTGTCGGCTGCGTGCCGCGTGTGGCGCGCCGCCGTCGCGCGTCTCGCACA
AAAGACACCCCGCCGCGCCGCCGCGCTGTAA
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