Gchil8562.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8562.t1
Unique NameGchil8562.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:289495..290298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703934.1
PFAMsMoCF_biosynth,PAPS_reduct
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00953
KEGG ReactionR00161
KEGG Pathwayko00740,ko01100,ko01110,map00740,map01100,map01110
KEGG ModuleM00125
Evalue6.52e-55
EggNOG OGsCOG0175@1|root,KOG2644@2759|Eukaryota
EC2.7.7.2
Descriptionflavin adenine dinucleotide biosynthetic process
COG categoryEH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8562Gchil8562Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 289495..290298 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8562.t1.start1Gchil8562.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 289495..289497 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8562.t1.CDS1Gchil8562.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 289495..290298 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8562.t1.exon1Gchil8562.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 289495..290298 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8562.t1.stop1Gchil8562.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 290296..290298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8562.t1Gchil8562.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 289495..290298 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8562.t1 ID=Gchil8562.t1|Name=Gchil8562.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=268bp
MGSKYRKKTNEYYTPLRDSKKMGAYEVKCPTFVDKECLRLYKSIVEQAST
HAYIRKALETLDSAFRLYSPENVAVAFNGGKDATVVMHLARAALANWCNE
NATSAELHCLYMCGAEGEQFSEVNSFVREQVSAYQLSAVEVHLGIKEGIC
KFTKERDNMCAFILGTRRSDPHGATMEHFEPSSKGWPPFMRVNPVLTWHY
HDVWEFLRHFRLPYCCLYDRGYTSLGSVATTGPNPALKNDENERGYEPAW
MLEDESLERAGRVSKSQ*
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spliced messenger RNA

>Gchil8562.t1 ID=Gchil8562.t1|Name=Gchil8562.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000088_pilon:289495..290298+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAGTAAATATCGCAAGAAGACAAACGAATACTACACACCACTCCG
TGACTCTAAGAAGATGGGGGCCTATGAAGTGAAGTGCCCGACATTCGTGG
ACAAAGAGTGTCTCCGCCTCTACAAAAGTATCGTGGAGCAAGCATCAACT
CATGCATACATTCGAAAGGCGCTCGAAACTCTTGACTCCGCATTTCGCTT
GTACAGTCCAGAGAACGTGGCCGTTGCGTTCAATGGTGGGAAGGATGCAA
CAGTCGTTATGCATCTTGCAAGAGCCGCCCTGGCAAATTGGTGCAATGAA
AACGCGACTTCAGCCGAATTGCACTGCCTGTATATGTGCGGTGCCGAAGG
AGAGCAGTTTTCCGAAGTGAATTCTTTTGTGCGTGAACAGGTTTCTGCTT
ACCAACTATCGGCAGTAGAGGTGCATCTTGGAATCAAGGAAGGTATATGT
AAGTTCACCAAAGAAAGAGATAACATGTGTGCGTTTATTCTTGGCACAAG
ACGTTCTGATCCACATGGTGCTACCATGGAACACTTCGAACCTAGTAGCA
AGGGATGGCCACCTTTCATGAGAGTGAACCCAGTCCTCACGTGGCACTAT
CATGATGTGTGGGAGTTCTTGAGACATTTTCGGCTGCCATACTGTTGTTT
GTATGACAGAGGTTATACGAGTCTTGGTTCAGTAGCGACTACGGGACCCA
ATCCAGCACTGAAAAATGATGAAAATGAGAGAGGGTATGAGCCTGCTTGG
ATGTTGGAAGATGAATCTTTGGAAAGAGCCGGTCGAGTTTCGAAATCGCA
GTGA
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protein sequence of Gchil8562.t1

>Gchil8562.t1 ID=Gchil8562.t1|Name=Gchil8562.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=268bp
MGSKYRKKTNEYYTPLRDSKKMGAYEVKCPTFVDKECLRLYKSIVEQAST
HAYIRKALETLDSAFRLYSPENVAVAFNGGKDATVVMHLARAALANWCNE
NATSAELHCLYMCGAEGEQFSEVNSFVREQVSAYQLSAVEVHLGIKEGIC
KFTKERDNMCAFILGTRRSDPHGATMEHFEPSSKGWPPFMRVNPVLTWHY
HDVWEFLRHFRLPYCCLYDRGYTSLGSVATTGPNPALKNDENERGYEPAW
MLEDESLERAGRVSKSQ*
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mRNA from alignment at tig00000088_pilon:289495..290298+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8562.t1 ID=Gchil8562.t1|Name=Gchil8562.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000088_pilon:289495..290298+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCAGTAAATATCGCAAGAAGACAAACGAATACTACACACCACTCCG
TGACTCTAAGAAGATGGGGGCCTATGAAGTGAAGTGCCCGACATTCGTGG
ACAAAGAGTGTCTCCGCCTCTACAAAAGTATCGTGGAGCAAGCATCAACT
CATGCATACATTCGAAAGGCGCTCGAAACTCTTGACTCCGCATTTCGCTT
GTACAGTCCAGAGAACGTGGCCGTTGCGTTCAATGGTGGGAAGGATGCAA
CAGTCGTTATGCATCTTGCAAGAGCCGCCCTGGCAAATTGGTGCAATGAA
AACGCGACTTCAGCCGAATTGCACTGCCTGTATATGTGCGGTGCCGAAGG
AGAGCAGTTTTCCGAAGTGAATTCTTTTGTGCGTGAACAGGTTTCTGCTT
ACCAACTATCGGCAGTAGAGGTGCATCTTGGAATCAAGGAAGGTATATGT
AAGTTCACCAAAGAAAGAGATAACATGTGTGCGTTTATTCTTGGCACAAG
ACGTTCTGATCCACATGGTGCTACCATGGAACACTTCGAACCTAGTAGCA
AGGGATGGCCACCTTTCATGAGAGTGAACCCAGTCCTCACGTGGCACTAT
CATGATGTGTGGGAGTTCTTGAGACATTTTCGGCTGCCATACTGTTGTTT
GTATGACAGAGGTTATACGAGTCTTGGTTCAGTAGCGACTACGGGACCCA
ATCCAGCACTGAAAAATGATGAAAATGAGAGAGGGTATGAGCCTGCTTGG
ATGTTGGAAGATGAATCTTTGGAAAGAGCCGGTCGAGTTTCGAAATCGCA
GTGA
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Coding sequence (CDS) from alignment at tig00000088_pilon:289495..290298+

>Gchil8562.t1 ID=Gchil8562.t1|Name=Gchil8562.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=804bp|location=Sequence derived from alignment at tig00000088_pilon:289495..290298+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCAGTAAATATCGCAAGAAGACAAACGAATACTACACACCACTCCG
TGACTCTAAGAAGATGGGGGCCTATGAAGTGAAGTGCCCGACATTCGTGG
ACAAAGAGTGTCTCCGCCTCTACAAAAGTATCGTGGAGCAAGCATCAACT
CATGCATACATTCGAAAGGCGCTCGAAACTCTTGACTCCGCATTTCGCTT
GTACAGTCCAGAGAACGTGGCCGTTGCGTTCAATGGTGGGAAGGATGCAA
CAGTCGTTATGCATCTTGCAAGAGCCGCCCTGGCAAATTGGTGCAATGAA
AACGCGACTTCAGCCGAATTGCACTGCCTGTATATGTGCGGTGCCGAAGG
AGAGCAGTTTTCCGAAGTGAATTCTTTTGTGCGTGAACAGGTTTCTGCTT
ACCAACTATCGGCAGTAGAGGTGCATCTTGGAATCAAGGAAGGTATATGT
AAGTTCACCAAAGAAAGAGATAACATGTGTGCGTTTATTCTTGGCACAAG
ACGTTCTGATCCACATGGTGCTACCATGGAACACTTCGAACCTAGTAGCA
AGGGATGGCCACCTTTCATGAGAGTGAACCCAGTCCTCACGTGGCACTAT
CATGATGTGTGGGAGTTCTTGAGACATTTTCGGCTGCCATACTGTTGTTT
GTATGACAGAGGTTATACGAGTCTTGGTTCAGTAGCGACTACGGGACCCA
ATCCAGCACTGAAAAATGATGAAAATGAGAGAGGGTATGAGCCTGCTTGG
ATGTTGGAAGATGAATCTTTGGAAAGAGCCGGTCGAGTTTCGAAATCGCA
GTGA
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