Gchil8690.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8690.t1
Unique NameGchil8690.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length603
Homology
BLAST of Gchil8690.t1 vs. uniprot
Match: A0A2V3IG78_9FLOR (Peptidyl-tRNA hydrolase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IG78_9FLOR)

HSP 1 Score: 332 bits (850), Expect = 7.430e-107
Identity = 173/266 (65.04%), Postives = 213/266 (80.08%), Query Frame = 0
Query:  343 RSYQ--NAFLPIAPNFGVLRRRCYS----CVQRNGVIRYSTAGPPPSSSD-TAKPSQPLKTSSNQSQPLERGDKLLVVGLGNPGPRFENTRHNVGFSLLDQYAARHAAGNFRKQPSVQGEVVRFQVYNRSVMLLKPNTFMNASGRAVRAALKYLNAPVSALLVIVDDMSLPIGDLRLRGKGSAGGHNGLKSIQQSVGGVKYARLRIGVGSPRRGSQEWADFVLGPFSKGERKAIEGVEWDVMEAIDFWVQEPSIEKVQNQIALTKQ 601
            RSY   +AF+P+ P   VLR +  +    C+ +    R  T  P PS S+ TA PS  +K  +++  P ERG+KLLVVGLGNPGPRF+NTRHNVGF+LLDQYAARH+A  FR++ SVQG+V RF +++RSVMLLKP+TFMNASGRAVRAALKY++APV+ALLV+ DD+SL +GD+RLR KGSAGGHNGLKSIQQ VGG+ YARLRIGVGSP RG+++WADFVLG FS+ E++ ++ VEWDVMEAID+WV E SIEKVQ QIAL KQ
Sbjct:    7 RSYVRGSAFVPVIP---VLRHQHQNIRLKCLSQGA--RCCTTSPTPSPSNATANPSPLIKQRNSRPPPPERGNKLLVVGLGNPGPRFDNTRHNVGFTLLDQYAARHSASKFRRESSVQGDVARFHLHDRSVMLLKPSTFMNASGRAVRAALKYIDAPVAALLVVTDDISLDLGDIRLRAKGSAGGHNGLKSIQQCVGGMNYARLRIGVGSPSRGAEDWADFVLGSFSRSEKQVLDKVEWDVMEAIDYWVDEASIEKVQTQIALAKQ 267          
BLAST of Gchil8690.t1 vs. uniprot
Match: A0A2V3J617_9FLOR (Chaperone protein ClpB 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J617_9FLOR)

HSP 1 Score: 242 bits (618), Expect = 5.650e-66
Identity = 127/171 (74.27%), Postives = 143/171 (83.63%), Query Frame = 0
Query:   30 KSLREVLEEARYSQKEFGDQLVAVEHFLIACLRNGRSQRCLLNAPPVPSLQDVVKAIKEIRGDRRVTSQFAESMYEALEKYGRDHTDASKKGELDPVICRDEEIRCIIQILSRCQKNNHVFLGEPDVGKTAVEEGLAQRIVSGDVSSSSIANRRLIGLDMGALVVDELVEG 200
            +SLREVLEEAR SQK+FGDQ  A+EH LIAC +NGR QR L NAP +PSLQDVVKA+KE+RGD++VTSQ AES YEAL+KYGRD T+A++KGELDPVI RDEEIR  IQILSR QKNN V LGEP VGKTAV EGLAQRI+SGD+ SS +ANRRLIGLDMGALV      G
Sbjct:  168 RSLREVLEEARNSQKDFGDQFTAIEHLLIACFKNGRLQRGLFNAPGMPSLQDVVKAVKEVRGDKKVTSQSAESTYEALDKYGRDLTEAARKGELDPVIGRDEEIRRTIQILSRRQKNNPVLLGEPGVGKTAVAEGLAQRIISGDIPSS-LANRRLIGLDMGALVAGAKFRG 337          
BLAST of Gchil8690.t1 vs. uniprot
Match: S0F363_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F363_CHOCR)

HSP 1 Score: 204 bits (519), Expect = 3.560e-53
Identity = 106/154 (68.83%), Postives = 124/154 (80.52%), Query Frame = 0
Query:   47 GDQLVAVEHFLIACLRNGRSQRCLLNAPPVPSLQDVVKAIKEIRGDRRVTSQFAESMYEALEKYGRDHTDASKKGELDPVICRDEEIRCIIQILSRCQKNNHVFLGEPDVGKTAVEEGLAQRIVSGDVSSSSIANRRLIGLDMGALVVDELVEG 200
            GDQ VAVEH L+AC  NGR QR LLN P +PSL+DV+ A+KE+RG ++VTSQ AE  YEAL+KYGRD TDA++KG+LDPVI RDEEIR +IQILSR QKNN + LGEP VGKTAV EGLAQRIVSGDV +S +ANR+L+ LDMGALV      G
Sbjct:    2 GDQFVAVEHMLLACWANGRLQRGLLNKPGMPSLEDVIAAVKEVRGGKKVTSQNAEGSYEALDKYGRDLTDAARKGQLDPVIGRDEEIRRVIQILSRRQKNNPILLGEPGVGKTAVAEGLAQRIVSGDVPTS-LANRKLVNLDMGALVAGAKFRG 154          
BLAST of Gchil8690.t1 vs. uniprot
Match: A0A7S3ACE0_9RHOD (Peptidyl-tRNA hydrolase n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ACE0_9RHOD)

HSP 1 Score: 176 bits (445), Expect = 1.210e-47
Identity = 84/191 (43.98%), Postives = 124/191 (64.92%), Query Frame = 0
Query:  406 RGDKLLVVGLGNPGPRFENTRHNVGFSLLDQYAARHAAGNFRKQPSVQGEVVRFQVYNRSVMLLKPNTFMNASGRAVRAALKYLNAPVSALLVIVDDMSLPIGDLRLRGKGSAGGHNGLKSIQQSVGGVKYARLRIGVGSPRRGSQEWADFVLGPFSKGERKAIEGVEWDVMEAIDFWVQEPSIEKVQNQI 596
            RG +L V+GLGNPG  F +TRHNVGF +++ +A RH  GN +       E+   ++ N++VML+KP TFMN SG +VR  + +   P  A+L++ DD+ L +G +RLR KGS+GGHNGLK I++S+G   Y RL++GVG P +   +  D+VLG F + E  A++ + W  +E ID WV+   + KV N +
Sbjct:   32 RGSRLAVIGLGNPGNEFRSTRHNVGFDIIEAFAQRHG-GNMKMAQKYLAEMCEIKLENKTVMLVKPMTFMNLSGTSVRKIVDFYKLPHDAILIVADDIYLELGRVRLRAKGSSGGHNGLKHIEKSLGTQIYPRLKVGVGGPNKADLK--DYVLGKFKRSEVDAVDDMLWTCVELIDEWVKNADLSKVVNNV 219          
BLAST of Gchil8690.t1 vs. uniprot
Match: A0A7S0ZE14_9RHOD (Peptidyl-tRNA hydrolase n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZE14_9RHOD)

HSP 1 Score: 177 bits (448), Expect = 3.390e-47
Identity = 94/196 (47.96%), Postives = 131/196 (66.84%), Query Frame = 0
Query:  404 LERGDKLLVVGLGNPGPRFENTRHNVGFSLLDQYAARHAAGNFR---KQPSVQGEVVRFQVYNRSVMLLKPNTFMNASGRAVRAALKYLNAPVSALLVIVDDMSLPIGDLRLRGKGSAGGHNGLKSIQQSVGGVKYARLRIGVGSPRRGSQEWADFVLGPFSKGERKAIEGVEWDVMEAIDFWVQEPSIEKVQNQI 596
            + RG KLLVVGLGNPG  +E TRHNVGF  LD +AAR  A  F+   K  ++  EV      N  V L+KP+T+MN SG++V+A  K+   P SA+LV+VD++++  G +RLR KGSAGGHNGLKSIQQS+G  +Y RLRIG+G P    ++ A+FVL  F++ E+K I+ V  D M+ ++ WV+  +  +V   +
Sbjct:   94 VPRGSKLLVVGLGNPGKEYEMTRHNVGFQFLDIWAARLNASKFKVESKYSALISEVNLNDSKNTQVFLMKPSTYMNLSGQSVKAFCKFHKIPSSAVLVVVDEVNVDFGKVRLREKGSAGGHNGLKSIQQSLGTQEYPRLRIGLGRPNH-REDLANFVLAKFTRSEQKDIQNVYIDCMDILEEWVRNENFSQVMTLV 288          
BLAST of Gchil8690.t1 vs. uniprot
Match: A0A4R0QV99_9SYNE (Peptidyl-tRNA hydrolase n=3 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A4R0QV99_9SYNE)

HSP 1 Score: 169 bits (429), Expect = 1.310e-45
Identity = 93/197 (47.21%), Postives = 123/197 (62.44%), Query Frame = 0
Query:  404 LERGDKLLVVGLGNPGPRFENTRHNVGFSLLDQYAARHAAGNFRKQPSVQGEVVRFQVYNRSVMLLKPNTFMNASGRAVRAALKYLNAPVSALLVIVDDMSLPIGDLRLRGKGSAGGHNGLKSIQQSVGGVKYARLRIGVGSPRRGSQE----WADFVLGPFSKGERKAIEGVEWDVMEAIDFWVQEPSIEKVQNQI 596
            ++RG   LVVGLGNPG R+  TRHNVGF  L+    R     FR  P + GE+    +    + LL P TFMN SGRA+RAAL + +  V+ LLV+VDDM LP+G LRLR KGSAGGHNGL+S  Q +G   +ARL+IG+G+P R  +E        VLG FSK E+  +E V   V++ +D  +Q   +E+  NQ+
Sbjct:    1 MDRGQLRLVVGLGNPGDRYAGTRHNVGFMALEAMTRREGT-RFRSMPKLHGELAELGLGAERLRLLMPQTFMNDSGRAIRAALDWFDLDVNQLLVVVDDMDLPLGRLRLRAKGSAGGHNGLRSTIQHLGTQDFARLKIGIGAPGRTPEERRARTVSHVLGSFSKEEQPLLETVLDAVLKGLDL-IQRQGLERAGNQL 195          
BLAST of Gchil8690.t1 vs. uniprot
Match: A0A2E9J107_9SYNE (Peptidyl-tRNA hydrolase n=1 Tax=Synechococcus sp. NP17 TaxID=2024885 RepID=A0A2E9J107_9SYNE)

HSP 1 Score: 168 bits (426), Expect = 3.760e-45
Identity = 89/182 (48.90%), Postives = 117/182 (64.29%), Query Frame = 0
Query:  404 LERGDKLLVVGLGNPGPRFENTRHNVGFSLLDQYAARHAAGNFRKQPSVQGEVVRFQVYNRSVMLLKPNTFMNASGRAVRAALKYLNAPVSALLVIVDDMSLPIGDLRLRGKGSAGGHNGLKSIQQSVGGVKYARLRIGVGSPRRGSQE----WADFVLGPFSKGERKAIEGVEWDVMEAID 581
            + RGD  LVVGLGNPG R+ NTRHNVGF +L++  AR   GNFR  P +QG++    +    + LL P T+MN SGR++RAAL +     S +LV+VDDM LP+G LRLR KGSAGGHNGLKS  Q +G   +ARLRIG+G+P +   E        VLG FS  E   +  V  +V++ ++
Sbjct:    1 MNRGDLRLVVGLGNPGNRYANTRHNVGFMVLERLVARDG-GNFRSMPKLQGQLAEKGLGESRLRLLMPQTYMNESGRSIRAALDWFGFEASQMLVLVDDMDLPLGRLRLRSKGSAGGHNGLKSTIQHLGNQDFARLRIGIGAPGQNPSERRARTVSHVLGRFSNEEEPLLTKVLSEVVDGLE 181          
BLAST of Gchil8690.t1 vs. uniprot
Match: PTH_SYNS3 (Peptidyl-tRNA hydrolase n=10 Tax=Synechococcales TaxID=1890424 RepID=PTH_SYNS3)

HSP 1 Score: 168 bits (425), Expect = 5.230e-45
Identity = 88/182 (48.35%), Postives = 119/182 (65.38%), Query Frame = 0
Query:  404 LERGDKLLVVGLGNPGPRFENTRHNVGFSLLDQYAARHAAGNFRKQPSVQGEVVRFQVYNRSVMLLKPNTFMNASGRAVRAALKYLNAPVSALLVIVDDMSLPIGDLRLRGKGSAGGHNGLKSIQQSVGGVKYARLRIGVGSPRRGSQE----WADFVLGPFSKGERKAIEGVEWDVMEAID 581
            + RGD  LVVGLGNPG R+ NTRHNVGF  L++ A+R   G FR  P +QG++      ++ + LL P TFMN SGR++RAAL +    +  LLV+VDDM LP+G LRLR +GSAGGHNGLKS  Q +G   +ARLRIG+G+P +   E        VLG FS+ E   ++ V  +V++ ++
Sbjct:    1 MNRGDLRLVVGLGNPGNRYANTRHNVGFMALERLASREGGG-FRSMPKLQGQLADLGSGDKRLRLLMPQTFMNDSGRSIRAALDWFGFELHQLLVLVDDMDLPLGRLRLRARGSAGGHNGLKSTIQHLGTQDFARLRIGIGAPGQNPSERKARTVSHVLGSFSRDEEPLLDKVLLEVVDGLE 181          
BLAST of Gchil8690.t1 vs. uniprot
Match: Q05QQ7_9SYNE (Peptidyl-tRNA hydrolase n=1 Tax=Synechococcus sp. RS9916 TaxID=221359 RepID=Q05QQ7_9SYNE)

HSP 1 Score: 165 bits (418), Expect = 5.100e-44
Identity = 88/197 (44.67%), Postives = 126/197 (63.96%), Query Frame = 0
Query:  404 LERGDKLLVVGLGNPGPRFENTRHNVGFSLLDQYAARHAAGNFRKQPSVQGEVVRFQVYNRSVMLLKPNTFMNASGRAVRAALKYLNAPVSALLVIVDDMSLPIGDLRLRGKGSAGGHNGLKSIQQSVGGVKYARLRIGVGSPRRGSQE----WADFVLGPFSKGERKAIEGVEWDVMEAIDFWVQEPSIEKVQNQI 596
            ++ GD  L+VGLGNPG R+  TRHNVGF  L+  A+  +A  F+    +QGE+    V +  + LL P TFMN SGR++RAAL + +     +LV+VDDM LP+G LRLR KGSAGGHNGLKS  Q +G  ++ARLRIG+G+P R ++E        VLG F + E+  ++ V  +V+  +D  +Q   +E+  N++
Sbjct:    1 MQSGDLRLLVGLGNPGQRYAGTRHNVGFMALEALASGESA-RFKAMAKLQGELAEVGVGSNRLRLLMPQTFMNESGRSIRAALDWFDLSSDQVLVLVDDMDLPLGRLRLRAKGSAGGHNGLKSTIQHLGTQEFARLRIGIGAPGRSAEERRARTVSHVLGSFHQAEQSLLKDVLDEVLRGVDL-IQRQGLERAGNRL 195          
BLAST of Gchil8690.t1 vs. uniprot
Match: A0A354GSA4_9BACT (Peptidyl-tRNA hydrolase n=1 Tax=Planctomycetales bacterium TaxID=2053591 RepID=A0A354GSA4_9BACT)

HSP 1 Score: 163 bits (412), Expect = 2.640e-43
Identity = 87/185 (47.03%), Postives = 116/185 (62.70%), Query Frame = 0
Query:  411 LVVGLGNPGPRFENTRHNVGFSLLDQYAARHAAGNFRKQPSVQGEVVRFQVYNRSVMLLKPNTFMNASGRAVRAALKYLNAPVSALLVIVDDMSLPIGDLRLRGKGSAGGHNGLKSIQQSVGGVKYARLRIGVGSPRRGSQEWADFVLGPFSKGERKAIEGVEWDVMEAIDFWVQEPSIEKVQNQ 595
            +VVGLGNPG R++ TRHNVGF ++D  AA   AG F  Q   Q +V         + L+KP TFMN SGR+VR  + +     + LLV+ DD+SLP+G LR+R KG+ GGHNGL+ IQ  +GGV+YARLRIGV +PR    +  D VLG F   ER AI+       +A+ FW ++  +E V N+
Sbjct:    3 VVVGLGNPGARYQRTRHNVGFDVVDSLAASPHAGRF--QSRFQAQVAEVLEDGEKLFLVKPETFMNLSGRSVRQVMDFFQVEATDLLVVCDDISLPLGKLRIRAKGTHGGHNGLRDIQNHLGGVEYARLRIGVDAPR---DDAIDHVLGRFRPAERAAIDDAVALAAQAVVFWARQ-GVEAVMNK 181          
The following BLAST results are available for this feature:
BLAST of Gchil8690.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IG78_9FLOR7.430e-10765.04Peptidyl-tRNA hydrolase n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J617_9FLOR5.650e-6674.27Chaperone protein ClpB 2 n=1 Tax=Gracilariopsis ch... [more]
S0F363_CHOCR3.560e-5368.83Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S3ACE0_9RHOD1.210e-4743.98Peptidyl-tRNA hydrolase n=2 Tax=Rhodosorus marinus... [more]
A0A7S0ZE14_9RHOD3.390e-4747.96Peptidyl-tRNA hydrolase n=1 Tax=Timspurckia oligop... [more]
A0A4R0QV99_9SYNE1.310e-4547.21Peptidyl-tRNA hydrolase n=3 Tax=unclassified Synec... [more]
A0A2E9J107_9SYNE3.760e-4548.90Peptidyl-tRNA hydrolase n=1 Tax=Synechococcus sp. ... [more]
PTH_SYNS35.230e-4548.35Peptidyl-tRNA hydrolase n=10 Tax=Synechococcales T... [more]
Q05QQ7_9SYNE5.100e-4444.67Peptidyl-tRNA hydrolase n=1 Tax=Synechococcus sp. ... [more]
A0A354GSA4_9BACT2.640e-4347.03Peptidyl-tRNA hydrolase n=1 Tax=Planctomycetales b... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 95..208
e-value: 3.4E-24
score: 87.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 104..196
IPR036628Clp, N-terminal domain superfamilyGENE3D1.10.1780.10coord: 23..94
e-value: 2.3E-8
score: 36.3
IPR036628Clp, N-terminal domain superfamilySUPERFAMILY81923Double Clp-N motifcoord: 28..102
IPR001328Peptidyl-tRNA hydrolasePFAMPF01195Pept_tRNA_hydrocoord: 411..596
e-value: 6.7E-55
score: 185.7
IPR001328Peptidyl-tRNA hydrolaseTIGRFAMTIGR00447TIGR00447coord: 410..596
e-value: 5.9E-52
score: 174.0
IPR001328Peptidyl-tRNA hydrolasePANTHERPTHR17224PEPTIDYL-TRNA HYDROLASEcoord: 388..593
IPR001328Peptidyl-tRNA hydrolaseHAMAPMF_00083Pept_tRNA_hydro_bactcoord: 409..589
score: 31.800825
IPR001328Peptidyl-tRNA hydrolaseCDDcd00462PTHcoord: 411..584
e-value: 2.66768E-71
score: 225.046
IPR036416Peptidyl-tRNA hydrolase superfamilyGENE3D3.40.50.1470coord: 407..602
e-value: 5.5E-60
score: 204.3
IPR036416Peptidyl-tRNA hydrolase superfamilySUPERFAMILY53178Peptidyl-tRNA hydrolase-likecoord: 410..594
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 211..237
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 377..401
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..237
NoneNo IPR availablePANTHERPTHR17224:SF1PEPTIDYL-TRNA HYDROLASE-RELATEDcoord: 388..593
IPR018171Peptidyl-tRNA hydrolase, conserved sitePROSITEPS01196PEPT_TRNA_HYDROL_2coord: 517..527
IPR018171Peptidyl-tRNA hydrolase, conserved sitePROSITEPS01195PEPT_TRNA_HYDROL_1coord: 422..435

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:1249014..1251415 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8690.t1Gchil8690.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000088_pilon 1249014..1251415 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8690.t1 ID=Gchil8690.t1|Name=Gchil8690.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=603bp
MTTWPDAFSIRLEIIASSCTLPLRSWNDSKSLREVLEEARYSQKEFGDQL
VAVEHFLIACLRNGRSQRCLLNAPPVPSLQDVVKAIKEIRGDRRVTSQFA
ESMYEALEKYGRDHTDASKKGELDPVICRDEEIRCIIQILSRCQKNNHVF
LGEPDVGKTAVEEGLAQRIVSGDVSSSSIANRRLIGLDMGALVVDELVEG
AEYDADDVDDTDGDSNHRFNDTDSEIHDVDDTDGDSNRCFEDTDSEIHDV
DEDTADVVGTIPKEPPATAVVNGSIPDVLEWALRYEESNPPNDMIASLAS
STVRLGDIITIKSWGGGQYEEECYSRLHEMAVHFTAIADFSSRSYQNAFL
PIAPNFGVLRRRCYSCVQRNGVIRYSTAGPPPSSSDTAKPSQPLKTSSNQ
SQPLERGDKLLVVGLGNPGPRFENTRHNVGFSLLDQYAARHAAGNFRKQP
SVQGEVVRFQVYNRSVMLLKPNTFMNASGRAVRAALKYLNAPVSALLVIV
DDMSLPIGDLRLRGKGSAGGHNGLKSIQQSVGGVKYARLRIGVGSPRRGS
QEWADFVLGPFSKGERKAIEGVEWDVMEAIDFWVQEPSIEKVQNQIALTK
QN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR036628Clp_N_dom_sf
IPR001328Pept_tRNA_hydro
IPR036416Pept_tRNA_hydro_sf
IPR018171Pept_tRNA_hydro_CS