Gchil8547.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8547.t2
Unique NameGchil8547.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length518
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:118037..119590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4081.Solyc10g079450.1.1
PFAMsMethyltransf_29
Max annot lvl35493|Streptophyta
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0012505,GO:0016740,GO:0016741,GO:0031410,GO:0031982,GO:0031984,GO:0032259,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0097708,GO:0098791
Evalue1.44e-14
EggNOG OGs28I6U@1|root,2QTJJ@2759|Eukaryota,37M9Q@33090|Viridiplantae,3GB2X@35493|Streptophyta,44MZX@71274|asterids
DescriptionPutative S-adenosyl-L-methionine-dependent methyltransferase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8547Gchil8547Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 118037..119590 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8547.t2.stop1Gchil8547.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 118037..118039 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8547.t2.CDS1Gchil8547.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 118037..119590 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8547.t2.exon1Gchil8547.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 118037..119590 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8547.t2.start1Gchil8547.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 119588..119590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8547.t2Gchil8547.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 118037..119590 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8547.t2 ID=Gchil8547.t2|Name=Gchil8547.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=518bp
MSHQPLPEVVQMTVTNSLRISIVVLVLILSVYLLSVNELGALLPHSTPRH
LKFHEQQYSDVVNTPHRNISAKQPSDDPVFGICVDSFHFPESLNFASPCF
VSPPKGYTKPYSKPECFWKTPRANIGNNNNDSKLVELHMDHQNWAFFKDD
DVIIRINGGTSVRNFGTNFDYVREVLKWIDLSPIASSNPNSSKAMLDTGA
GIGSVSAAFEDERSEHTSTLKVFSYVLPDDYLRLGSIIADRRLNSMLQSF
SGNPLPFPANSFHIVHCRWCWHHLQGYDKWLDEVNRLVIPGGYFIFTFTP
LRDKKLLPPEQWKEALKKQPWNCDLHAKIMRVCRKDNPRHEIPAVTNIDW
SPDFAQEFSTTVRSSFDKISSLTGTGIDSLRILNINCQPGNQCLQMETLL
NSRSVTNTFQSKFESALTRALTSGSVGFIHNWNKPGPFYPRSFDVVHLLC
EQSARPPSWILALKSLELHRLLAPGGMVLLMSSSCPQYENIQVDWSGYGF
RVSHKSDKYVLFHRIEY*
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spliced messenger RNA

>Gchil8547.t2 ID=Gchil8547.t2|Name=Gchil8547.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1554bp|location=Sequence derived from alignment at tig00000088_pilon:118037..119590- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCATCAACCCCTTCCGGAAGTTGTTCAAATGACGGTCACCAATTC
TTTACGAATTTCTATTGTTGTCTTGGTGCTCATTCTATCCGTGTATCTTC
TATCTGTCAATGAACTGGGAGCTCTTTTGCCACATTCTACGCCTCGCCAC
TTGAAATTTCATGAGCAGCAGTATTCTGACGTAGTAAATACGCCGCATCG
AAATATTTCTGCAAAACAGCCATCAGATGATCCAGTCTTTGGTATTTGTG
TGGATTCCTTTCATTTCCCAGAAAGCCTGAACTTTGCATCTCCCTGCTTT
GTATCTCCTCCAAAGGGTTACACAAAGCCGTATTCAAAACCAGAATGCTT
TTGGAAAACCCCACGGGCTAATATCGGCAACAACAATAATGACAGCAAGT
TGGTGGAGTTACATATGGATCATCAGAATTGGGCATTTTTCAAGGATGAT
GATGTAATCATTCGAATCAATGGAGGAACTTCCGTTCGAAACTTTGGAAC
TAATTTTGACTACGTCAGGGAGGTTCTGAAATGGATTGACTTGTCACCTA
TAGCATCAAGCAATCCAAACTCGTCCAAGGCCATGCTTGATACTGGTGCA
GGAATAGGTTCTGTTTCGGCGGCGTTCGAGGATGAGAGAAGTGAACATAC
TTCAACCTTGAAGGTTTTTTCCTATGTGCTGCCGGATGACTACTTGCGTT
TGGGGTCAATCATCGCAGATAGACGCTTGAATTCGATGCTGCAATCTTTC
TCGGGAAATCCTTTACCATTTCCGGCAAACTCTTTTCATATTGTTCATTG
TAGATGGTGTTGGCACCATTTACAAGGATATGACAAATGGTTAGACGAAG
TCAATCGACTTGTTATTCCTGGTGGATATTTTATATTTACATTTACCCCA
TTGAGAGACAAAAAATTGCTTCCCCCAGAACAATGGAAGGAAGCGCTTAA
AAAACAACCCTGGAATTGCGATCTTCATGCAAAAATCATGCGAGTATGCA
GAAAAGACAATCCACGGCATGAAATTCCTGCTGTCACAAATATTGATTGG
TCTCCCGATTTCGCCCAAGAGTTTTCGACAACGGTCCGCAGCTCATTTGA
CAAGATTTCGTCTCTCACTGGCACAGGAATCGATTCACTGCGAATCCTCA
ACATCAATTGTCAGCCAGGAAATCAGTGCTTGCAAATGGAAACTCTTCTC
AACTCCCGCAGCGTCACGAATACATTTCAATCAAAATTCGAGAGTGCCCT
CACCAGAGCACTGACTTCTGGTTCTGTAGGCTTTATTCACAATTGGAATA
AGCCGGGTCCATTCTATCCTCGGTCATTTGATGTTGTTCACTTGCTTTGT
GAACAATCTGCGCGACCCCCCTCATGGATTCTGGCTTTGAAATCTCTTGA
ACTACATCGGTTGCTTGCGCCTGGAGGCATGGTGCTGTTGATGAGCTCCT
CATGTCCACAGTATGAAAACATTCAAGTCGACTGGTCTGGGTACGGATTC
CGCGTTTCTCACAAGTCAGACAAATATGTCCTTTTTCACAGAATAGAATA
CTAG
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protein sequence of Gchil8547.t2

>Gchil8547.t2 ID=Gchil8547.t2|Name=Gchil8547.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=518bp
MSHQPLPEVVQMTVTNSLRISIVVLVLILSVYLLSVNELGALLPHSTPRH
LKFHEQQYSDVVNTPHRNISAKQPSDDPVFGICVDSFHFPESLNFASPCF
VSPPKGYTKPYSKPECFWKTPRANIGNNNNDSKLVELHMDHQNWAFFKDD
DVIIRINGGTSVRNFGTNFDYVREVLKWIDLSPIASSNPNSSKAMLDTGA
GIGSVSAAFEDERSEHTSTLKVFSYVLPDDYLRLGSIIADRRLNSMLQSF
SGNPLPFPANSFHIVHCRWCWHHLQGYDKWLDEVNRLVIPGGYFIFTFTP
LRDKKLLPPEQWKEALKKQPWNCDLHAKIMRVCRKDNPRHEIPAVTNIDW
SPDFAQEFSTTVRSSFDKISSLTGTGIDSLRILNINCQPGNQCLQMETLL
NSRSVTNTFQSKFESALTRALTSGSVGFIHNWNKPGPFYPRSFDVVHLLC
EQSARPPSWILALKSLELHRLLAPGGMVLLMSSSCPQYENIQVDWSGYGF
RVSHKSDKYVLFHRIEY*
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mRNA from alignment at tig00000088_pilon:118037..119590-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8547.t2 ID=Gchil8547.t2|Name=Gchil8547.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1554bp|location=Sequence derived from alignment at tig00000088_pilon:118037..119590- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCATCAACCCCTTCCGGAAGTTGTTCAAATGACGGTCACCAATTC
TTTACGAATTTCTATTGTTGTCTTGGTGCTCATTCTATCCGTGTATCTTC
TATCTGTCAATGAACTGGGAGCTCTTTTGCCACATTCTACGCCTCGCCAC
TTGAAATTTCATGAGCAGCAGTATTCTGACGTAGTAAATACGCCGCATCG
AAATATTTCTGCAAAACAGCCATCAGATGATCCAGTCTTTGGTATTTGTG
TGGATTCCTTTCATTTCCCAGAAAGCCTGAACTTTGCATCTCCCTGCTTT
GTATCTCCTCCAAAGGGTTACACAAAGCCGTATTCAAAACCAGAATGCTT
TTGGAAAACCCCACGGGCTAATATCGGCAACAACAATAATGACAGCAAGT
TGGTGGAGTTACATATGGATCATCAGAATTGGGCATTTTTCAAGGATGAT
GATGTAATCATTCGAATCAATGGAGGAACTTCCGTTCGAAACTTTGGAAC
TAATTTTGACTACGTCAGGGAGGTTCTGAAATGGATTGACTTGTCACCTA
TAGCATCAAGCAATCCAAACTCGTCCAAGGCCATGCTTGATACTGGTGCA
GGAATAGGTTCTGTTTCGGCGGCGTTCGAGGATGAGAGAAGTGAACATAC
TTCAACCTTGAAGGTTTTTTCCTATGTGCTGCCGGATGACTACTTGCGTT
TGGGGTCAATCATCGCAGATAGACGCTTGAATTCGATGCTGCAATCTTTC
TCGGGAAATCCTTTACCATTTCCGGCAAACTCTTTTCATATTGTTCATTG
TAGATGGTGTTGGCACCATTTACAAGGATATGACAAATGGTTAGACGAAG
TCAATCGACTTGTTATTCCTGGTGGATATTTTATATTTACATTTACCCCA
TTGAGAGACAAAAAATTGCTTCCCCCAGAACAATGGAAGGAAGCGCTTAA
AAAACAACCCTGGAATTGCGATCTTCATGCAAAAATCATGCGAGTATGCA
GAAAAGACAATCCACGGCATGAAATTCCTGCTGTCACAAATATTGATTGG
TCTCCCGATTTCGCCCAAGAGTTTTCGACAACGGTCCGCAGCTCATTTGA
CAAGATTTCGTCTCTCACTGGCACAGGAATCGATTCACTGCGAATCCTCA
ACATCAATTGTCAGCCAGGAAATCAGTGCTTGCAAATGGAAACTCTTCTC
AACTCCCGCAGCGTCACGAATACATTTCAATCAAAATTCGAGAGTGCCCT
CACCAGAGCACTGACTTCTGGTTCTGTAGGCTTTATTCACAATTGGAATA
AGCCGGGTCCATTCTATCCTCGGTCATTTGATGTTGTTCACTTGCTTTGT
GAACAATCTGCGCGACCCCCCTCATGGATTCTGGCTTTGAAATCTCTTGA
ACTACATCGGTTGCTTGCGCCTGGAGGCATGGTGCTGTTGATGAGCTCCT
CATGTCCACAGTATGAAAACATTCAAGTCGACTGGTCTGGGTACGGATTC
CGCGTTTCTCACAAGTCAGACAAATATGTCCTTTTTCACAGAATAGAATA
CTAG
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Coding sequence (CDS) from alignment at tig00000088_pilon:118037..119590-

>Gchil8547.t2 ID=Gchil8547.t2|Name=Gchil8547.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1554bp|location=Sequence derived from alignment at tig00000088_pilon:118037..119590- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCATCAACCCCTTCCGGAAGTTGTTCAAATGACGGTCACCAATTC
TTTACGAATTTCTATTGTTGTCTTGGTGCTCATTCTATCCGTGTATCTTC
TATCTGTCAATGAACTGGGAGCTCTTTTGCCACATTCTACGCCTCGCCAC
TTGAAATTTCATGAGCAGCAGTATTCTGACGTAGTAAATACGCCGCATCG
AAATATTTCTGCAAAACAGCCATCAGATGATCCAGTCTTTGGTATTTGTG
TGGATTCCTTTCATTTCCCAGAAAGCCTGAACTTTGCATCTCCCTGCTTT
GTATCTCCTCCAAAGGGTTACACAAAGCCGTATTCAAAACCAGAATGCTT
TTGGAAAACCCCACGGGCTAATATCGGCAACAACAATAATGACAGCAAGT
TGGTGGAGTTACATATGGATCATCAGAATTGGGCATTTTTCAAGGATGAT
GATGTAATCATTCGAATCAATGGAGGAACTTCCGTTCGAAACTTTGGAAC
TAATTTTGACTACGTCAGGGAGGTTCTGAAATGGATTGACTTGTCACCTA
TAGCATCAAGCAATCCAAACTCGTCCAAGGCCATGCTTGATACTGGTGCA
GGAATAGGTTCTGTTTCGGCGGCGTTCGAGGATGAGAGAAGTGAACATAC
TTCAACCTTGAAGGTTTTTTCCTATGTGCTGCCGGATGACTACTTGCGTT
TGGGGTCAATCATCGCAGATAGACGCTTGAATTCGATGCTGCAATCTTTC
TCGGGAAATCCTTTACCATTTCCGGCAAACTCTTTTCATATTGTTCATTG
TAGATGGTGTTGGCACCATTTACAAGGATATGACAAATGGTTAGACGAAG
TCAATCGACTTGTTATTCCTGGTGGATATTTTATATTTACATTTACCCCA
TTGAGAGACAAAAAATTGCTTCCCCCAGAACAATGGAAGGAAGCGCTTAA
AAAACAACCCTGGAATTGCGATCTTCATGCAAAAATCATGCGAGTATGCA
GAAAAGACAATCCACGGCATGAAATTCCTGCTGTCACAAATATTGATTGG
TCTCCCGATTTCGCCCAAGAGTTTTCGACAACGGTCCGCAGCTCATTTGA
CAAGATTTCGTCTCTCACTGGCACAGGAATCGATTCACTGCGAATCCTCA
ACATCAATTGTCAGCCAGGAAATCAGTGCTTGCAAATGGAAACTCTTCTC
AACTCCCGCAGCGTCACGAATACATTTCAATCAAAATTCGAGAGTGCCCT
CACCAGAGCACTGACTTCTGGTTCTGTAGGCTTTATTCACAATTGGAATA
AGCCGGGTCCATTCTATCCTCGGTCATTTGATGTTGTTCACTTGCTTTGT
GAACAATCTGCGCGACCCCCCTCATGGATTCTGGCTTTGAAATCTCTTGA
ACTACATCGGTTGCTTGCGCCTGGAGGCATGGTGCTGTTGATGAGCTCCT
CATGTCCACAGTATGAAAACATTCAAGTCGACTGGTCTGGGTACGGATTC
CGCGTTTCTCACAAGTCAGACAAATATGTCCTTTTTCACAGAATAGAATA
CTAG
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