Gchil8644.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8644.t1
Unique NameGchil8644.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length297
Homology
BLAST of Gchil8644.t1 vs. uniprot
Match: A0A2V3IDR1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDR1_9FLOR)

HSP 1 Score: 356 bits (913), Expect = 1.750e-120
Identity = 159/278 (57.19%), Postives = 204/278 (73.38%), Query Frame = 0
Query:   19 STHAEVAPCRRDGEYCSCMWAEEDGQKCWKQTASEDGGRFQCEDAPCAPSGWMCSCEDREYVCPIRQKQTPLFLEGSGGVNLCRNGSTSVVEPPVLRLGSFEIGLSRKGMHSNACNELVLWHNGDLVVNFGAKDNPTITCANADEEIRRRSNYTAVELQRGDLIAFRFKKASYHCFTSIAKFRINGRYMSSVDDEVVVRYARQYSTNWFSPSFIPVYPKDDLNMKNVTEETEPASVFVPLRRKLFSTGEMIPRGEDFWHPPDGTQDHSLGNFYFRIQL 296
            S+ AEV  CR+D +YCSC W+  D   CW          F+C  APC  +GW+CSCE REYVCP+++ + P +L+       CRN ++ +  PP+LRLGS EIGLSRKGM SNACNELV ++NG+ +VN+G   NP I CAN D EI RR+N+T++EL+RGDLIAFRFK ASYHCFTSIAKF I+G+ +SS+D EVV+RY  +++  W  PSF P+YPK++ ++ NVTE TE A VFVPLRR+ F TGE I  G+D+WHPPDG +DH +GNFYFRIQL
Sbjct:   19 SSKAEVGHCRKDDDYCSCKWSGLDADMCWYPMGDNTQEEFECAKAPCGKTGWICSCEGREYVCPMKRVEHPTYLQEMNDKTYCRNMTSEMAGPPLLRLGSLEIGLSRKGMVSNACNELVWFYNGEFMVNYGDDSNPEINCANVDYEIDRRANHTSIELKRGDLIAFRFKHASYHCFTSIAKFYIDGKRLSSMDKEVVIRYTTKHTPGWHHPSFTPMYPKNNDSVYNVTEGTEAAGVFVPLRRRFFETGEKIMPGKDYWHPPDGGRDHKVGNFYFRIQL 296          
BLAST of Gchil8644.t1 vs. uniprot
Match: A0A2V3J1C3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1C3_9FLOR)

HSP 1 Score: 213 bits (543), Expect = 1.140e-64
Identity = 106/285 (37.19%), Postives = 157/285 (55.09%), Query Frame = 0
Query:   12 FVFLFFLSTHAEVAPCRRDGEYCSCMWAEEDGQKCWKQTASEDGGRFQCEDAPCAPSGWMCSCEDREYVCPIRQKQTPLFLEGSGGVNLCRNGSTSVVEPPVLRLGSFEIGLSRKGMHSNACNELVLWHNGDLVVNFGAKDNPTITCANADEEIRRRSNYTAVELQRGDLIAFRFKKASYHCFTSIAKFRINGRYMSSVDDEVVVRYARQYSTNWFSPSFIPVYPKDDLNMKNVTEETEPASVFVPLRRKLFSTGEMIPRGEDFWHPPDGTQDHSLGNFYFRIQL 296
            F  +   + H E  PCR D +YCSC +  E   +C  +       R  C +  C  +GW C+C  R ++CP++     +    SG    CR+ +      P ++LGS+ IG+S+K +  N C ++  W NG+L+  +G  + P I   N D E+ RR  +TA+EL+RGDL+AFRF+ ASYHCFT ++   +NG+ +   D  + +R+ARQ+S +W  PSF P    D        E+    + F+PLR   FS G  I  G D+W  P GT+DH  GNFY+R+QL
Sbjct:   10 FALILVAALHGETIPCRYDTKYCSCKYGSERQGRCLDRIGGTSS-RGPCIERYCR-AGWTCACLGRTHLCPLKNATRSVVDSLSGSQLYCRDETIQGAGLPSIKLGSWTIGISKKALLENECKDMKWWLNGELLGEYG--ETPRINRFNVDYELLRRGTHTAIELKRGDLLAFRFRDASYHCFTHVSDIEVNGQIVRLGDSSLSIRFARQFSQDWNEPSFTPNLASD--------EDLALPTDFLPLRTNFFSDGRTINAGWDYWTQPAGTRDHEKGNFYYRVQL 282          
BLAST of Gchil8644.t1 vs. uniprot
Match: R7QB89_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QB89_CHOCR)

HSP 1 Score: 110 bits (276), Expect = 1.510e-26
Identity = 55/143 (38.46%), Postives = 84/143 (58.74%), Query Frame = 0
Query:  154 PTITCANADEEIRRRSNYTAVELQRGDLIAFRFKKASYHCFTSIAKFRINGRYMSSVDDEVVVRYARQYSTNWFSPSFIPVYPKDDLNMKNVTEETEPASVFVPLRRKLFSTGEMIPRGEDFWHPPDGTQDHSLGNFYFRIQL 296
            P IT AN   ++ RR+ +  +ELQ+ D IAFRFK  SYHC+   +   +NG  +++ +  +   Y+R +++NWF PSF+P   K DL+  ++T+       F PLR  + S G     GED W   DG++DH + NFYFR+ +
Sbjct:    8 PQITGANLGAQMVRRTKHVLLELQKNDTIAFRFKNGSYHCYNHFSNLNVNGVNVTTQESSIETLYSRGHTSNWFMPSFVPNV-KQDLDEASITD-------FTPLRPTM-SNGAPDVIGEDNWKAVDGSEDHMISNFYFRMTI 141          
The following BLAST results are available for this feature:
BLAST of Gchil8644.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IDR1_9FLOR1.750e-12057.19Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J1C3_9FLOR1.140e-6437.19Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QB89_CHOCR1.510e-2638.46Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..296
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..22

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:872761..873780 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8644.t1Gchil8644.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000088_pilon 872761..873780 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8644.t1 ID=Gchil8644.t1|Name=Gchil8644.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=297bp
MLRYSVWTASTFVFLFFLSTHAEVAPCRRDGEYCSCMWAEEDGQKCWKQT
ASEDGGRFQCEDAPCAPSGWMCSCEDREYVCPIRQKQTPLFLEGSGGVNL
CRNGSTSVVEPPVLRLGSFEIGLSRKGMHSNACNELVLWHNGDLVVNFGA
KDNPTITCANADEEIRRRSNYTAVELQRGDLIAFRFKKASYHCFTSIAKF
RINGRYMSSVDDEVVVRYARQYSTNWFSPSFIPVYPKDDLNMKNVTEETE
PASVFVPLRRKLFSTGEMIPRGEDFWHPPDGTQDHSLGNFYFRIQL*
back to top