Gchil8603.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8603.t1
Unique NameGchil8603.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length129
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:581387..581948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8603Gchil8603Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 581387..581948 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8603.t1Gchil8603.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 581387..581948 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8603.t1.start1Gchil8603.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 581387..581389 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8603.t1.CDS1Gchil8603.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 581387..581425 +
Gchil8603.t1.CDS2Gchil8603.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 581517..581713 +
Gchil8603.t1.CDS3Gchil8603.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 581798..581948 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8603.t1.exon1Gchil8603.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 581387..581425 +
Gchil8603.t1.exon2Gchil8603.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 581517..581713 +
Gchil8603.t1.exon3Gchil8603.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 581798..581948 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8603.t1.intron1Gchil8603.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000088_pilon 581426..581516 +
Gchil8603.t1.intron2Gchil8603.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000088_pilon 581714..581797 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8603.t1.stop1Gchil8603.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 581946..581948 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8603.t1 ID=Gchil8603.t1|Name=Gchil8603.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=129bp
MGDIDEEIIEGPKVSAALEWGGTHDEPRTRDKFWYRAMLTDTPPDEGLIW
KVARRPRTRRNEDPHPTVRLMRENPMGILFAKVKAGEILVENYYDLTNRL
ALQARDEEEKASKKNKKTTKSLERDSSK*
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spliced messenger RNA

>Gchil8603.t1 ID=Gchil8603.t1|Name=Gchil8603.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=387bp|location=Sequence derived from alignment at tig00000088_pilon:581387..581948+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGACATCGATGAAGAAATCATTGAAGGCCCAAAGGTGTCCGCCGC
ACTCGAGTGGGGAGGTACCCATGATGAGCCCAGAACACGCGATAAGTTTT
GGTACCGAGCTATGCTCACGGACACGCCGCCGGATGAAGGCTTAATTTGG
AAGGTTGCCAGGAGGCCTCGAACTCGTCGCAACGAAGATCCGCATCCTAC
CGTGCGTCTAATGAGAGAAAATCCTATGGGTATCCTCTTTGCTAAAGTCA
AAGCCGGAGAGATATTGGTGGAGAACTATTATGACTTAACCAATCGATTG
GCCTTACAGGCACGAGATGAAGAGGAGAAGGCCTCTAAAAAGAACAAAAA
GACCACCAAGTCGTTGGAACGCGATTCCTCGAAGTAG
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protein sequence of Gchil8603.t1

>Gchil8603.t1 ID=Gchil8603.t1|Name=Gchil8603.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=129bp
MGDIDEEIIEGPKVSAALEWGGTHDEPRTRDKFWYRAMLTDTPPDEGLIW
KVARRPRTRRNEDPHPTVRLMRENPMGILFAKVKAGEILVENYYDLTNRL
ALQARDEEEKASKKNKKTTKSLERDSSK*
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mRNA from alignment at tig00000088_pilon:581387..581948+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8603.t1 ID=Gchil8603.t1|Name=Gchil8603.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=562bp|location=Sequence derived from alignment at tig00000088_pilon:581387..581948+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGAGACATCGATGAAGAAATCATTGAAGGCCCAAAGGTTCGTACCCA
TCACCAATATCCGATGGCAGAAATGATTCGCTCCTGTCTGTAATCTAACT
GGTCTTCGTTTTCGCTTGCCCGTTTACCAGGTGTCCGCCGCACTCGAGTG
GGGAGGTACCCATGATGAGCCCAGAACACGCGATAAGTTTTGGTACCGAG
CTATGCTCACGGACACGCCGCCGGATGAAGGCTTAATTTGGAAGGTTGCC
AGGAGGCCTCGAACTCGTCGCAACGAAGATCCGCATCCTACCGTGCGTCT
AATGAGAGAAAATCCTATGGGTATCCTGTATGTCTCCGAAGATACGTTTC
CTAATTGAATTCATGACTATTATGCTAACTTGTTTGAATACCGTCTTTCC
GTGCCGTACAGCTTTGCTAAAGTCAAAGCCGGAGAGATATTGGTGGAGAA
CTATTATGACTTAACCAATCGATTGGCCTTACAGGCACGAGATGAAGAGG
AGAAGGCCTCTAAAAAGAACAAAAAGACCACCAAGTCGTTGGAACGCGAT
TCCTCGAAGTAG
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Coding sequence (CDS) from alignment at tig00000088_pilon:581387..581948+

>Gchil8603.t1 ID=Gchil8603.t1|Name=Gchil8603.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=387bp|location=Sequence derived from alignment at tig00000088_pilon:581387..581948+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGAGACATCGATGAAGAAATCATTGAAGGCCCAAAGGTGTCCGCCGC
ACTCGAGTGGGGAGGTACCCATGATGAGCCCAGAACACGCGATAAGTTTT
GGTACCGAGCTATGCTCACGGACACGCCGCCGGATGAAGGCTTAATTTGG
AAGGTTGCCAGGAGGCCTCGAACTCGTCGCAACGAAGATCCGCATCCTAC
CGTGCGTCTAATGAGAGAAAATCCTATGGGTATCCTCTTTGCTAAAGTCA
AAGCCGGAGAGATATTGGTGGAGAACTATTATGACTTAACCAATCGATTG
GCCTTACAGGCACGAGATGAAGAGGAGAAGGCCTCTAAAAAGAACAAAAA
GACCACCAAGTCGTTGGAACGCGATTCCTCGAAGTAG
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