Gchil8613.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8613.t1
Unique NameGchil8613.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length502
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:614349..615854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705872.1
PFAMsPP2C
Max annot lvl2759|Eukaryota
KEGG koko:K04403,ko:K14803,ko:K17500
KEGG Pathwayko04010,ko04064,ko04380,ko04620,ko04621,ko04668,ko05140,ko05145,ko05168,ko05169,map04010,map04064,map04380,map04620,map04621,map04668,map05140,map05145,map05168,map05169
KEGG ModuleM00686
Evalue8.6e-71
EggNOG OGsCOG0631@1|root,KOG0698@2759|Eukaryota
EC3.1.3.16
Descriptionprotein serine/threonine phosphatase activity
COG categoryT
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8613Gchil8613Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 614349..615854 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8613.t1.stop1Gchil8613.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 614349..614351 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8613.t1.CDS1Gchil8613.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 614349..615854 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8613.t1.exon1Gchil8613.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 614349..615854 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8613.t1.start1Gchil8613.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 615852..615854 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8613.t1Gchil8613.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 614349..615854 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8613.t1 ID=Gchil8613.t1|Name=Gchil8613.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=502bp
MDLPRRSRTPSDTTPLIMRSPSLPHSISQSEVHAVRARTDIGTANDTSTR
VYPETIHRPAPVHPPDSLSTPDRNRRLSLDGELPPNAIRPDDPHAELEEE
TLREGLIDFIPDAFSKPIDVSACSKAGWEPLRDSSMPVAPMHTVEVRKEN
QDAFCALAPFVIVPAAPNDTKGQRQIFLGVFDGHGAEGRPIAHYARDYIV
ATAREAAPSLAFSHSHKQHPVPPQLHRERLNLLQAAFSRAERALTETEPP
IDHVFSGTTAVVAWIFGRDVYTAWTGDSRCVIGRVCSTDQGRVRFKAIDL
SHDQKPTRADEKRRVRAAGGRIARWHRNSGPLRVWLPRDWTPGLAMTRSI
GDTVLSEYGVRPVPEVSFTTLGSHDSFIVLASDGVWEFMTSQEVVEFIGR
MRREGRSANDAAEALVREAVRRWRRNEVVVDDTTAVVVWLALDDDGEEDK
KASESPLSRHRRLFSMARARVGKHHSHGVQMVCEDGHLSEFHCKNDLLQA
L*
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spliced messenger RNA

>Gchil8613.t1 ID=Gchil8613.t1|Name=Gchil8613.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1506bp|location=Sequence derived from alignment at tig00000088_pilon:614349..615854- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCTTCCCCGTCGCTCGCGCACACCCTCCGACACCACCCCTCTCAT
CATGCGCTCCCCCTCGCTGCCCCACTCCATCTCGCAGTCCGAGGTGCACG
CCGTGCGCGCCCGCACCGACATCGGCACCGCTAACGACACCTCCACCCGT
GTATACCCCGAAACCATCCACCGTCCAGCCCCCGTCCACCCGCCCGACTC
GCTTTCCACTCCTGACCGCAACCGCCGCCTCTCCCTCGACGGTGAACTCC
CGCCAAACGCCATTCGCCCCGACGACCCGCACGCCGAGCTCGAGGAAGAG
ACTCTGCGCGAGGGTTTGATCGATTTCATTCCCGACGCCTTCAGCAAACC
TATCGACGTGTCGGCATGTTCCAAGGCTGGTTGGGAACCGTTGCGAGATT
CGTCCATGCCCGTGGCCCCGATGCATACCGTCGAGGTACGCAAGGAGAAT
CAGGATGCATTTTGTGCGCTTGCCCCATTTGTTATCGTCCCGGCCGCCCC
TAACGATACCAAGGGACAGCGCCAGATTTTTCTTGGCGTCTTTGATGGCC
ATGGTGCCGAGGGACGCCCCATAGCCCACTATGCGCGCGATTATATCGTC
GCCACAGCGCGTGAGGCTGCCCCGTCACTCGCCTTTTCCCATTCCCACAA
GCAGCACCCTGTGCCGCCTCAGCTGCACCGCGAACGCCTCAACCTGCTCC
AGGCCGCTTTTTCTCGCGCAGAGCGTGCGCTCACTGAGACAGAGCCGCCC
ATCGACCATGTGTTTTCCGGCACCACCGCCGTGGTAGCCTGGATATTCGG
CCGCGACGTCTACACCGCTTGGACGGGCGACTCACGCTGTGTCATTGGAC
GAGTGTGTTCCACGGACCAGGGTCGCGTTCGTTTCAAGGCCATTGACCTC
AGTCATGACCAAAAACCTACGCGCGCCGACGAAAAACGTCGTGTGCGCGC
TGCTGGCGGGCGAATTGCTAGATGGCATCGGAATTCGGGACCATTGCGTG
TGTGGCTGCCGCGTGATTGGACGCCTGGGCTGGCTATGACGCGGAGCATC
GGCGACACCGTACTGAGCGAGTACGGTGTGAGGCCGGTTCCGGAGGTTTC
GTTCACCACGTTGGGCTCGCACGATAGTTTTATTGTACTTGCCAGCGATG
GGGTGTGGGAGTTTATGACGAGCCAGGAAGTGGTGGAATTCATTGGGCGC
ATGCGGAGAGAAGGGCGGAGCGCGAATGATGCCGCCGAGGCTCTTGTGCG
CGAGGCTGTACGAAGGTGGCGGCGTAATGAGGTGGTGGTGGATGATACAA
CGGCCGTGGTCGTATGGCTGGCGTTAGATGACGATGGGGAGGAGGACAAG
AAAGCGAGCGAGTCGCCGTTGTCAAGACATCGAAGACTGTTTTCAATGGC
CAGAGCAAGAGTTGGGAAACATCATTCGCATGGTGTGCAAATGGTTTGCG
AAGACGGACATCTTTCGGAGTTTCATTGTAAGAATGACCTTTTGCAGGCT
TTGTGA
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protein sequence of Gchil8613.t1

>Gchil8613.t1 ID=Gchil8613.t1|Name=Gchil8613.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=502bp
MDLPRRSRTPSDTTPLIMRSPSLPHSISQSEVHAVRARTDIGTANDTSTR
VYPETIHRPAPVHPPDSLSTPDRNRRLSLDGELPPNAIRPDDPHAELEEE
TLREGLIDFIPDAFSKPIDVSACSKAGWEPLRDSSMPVAPMHTVEVRKEN
QDAFCALAPFVIVPAAPNDTKGQRQIFLGVFDGHGAEGRPIAHYARDYIV
ATAREAAPSLAFSHSHKQHPVPPQLHRERLNLLQAAFSRAERALTETEPP
IDHVFSGTTAVVAWIFGRDVYTAWTGDSRCVIGRVCSTDQGRVRFKAIDL
SHDQKPTRADEKRRVRAAGGRIARWHRNSGPLRVWLPRDWTPGLAMTRSI
GDTVLSEYGVRPVPEVSFTTLGSHDSFIVLASDGVWEFMTSQEVVEFIGR
MRREGRSANDAAEALVREAVRRWRRNEVVVDDTTAVVVWLALDDDGEEDK
KASESPLSRHRRLFSMARARVGKHHSHGVQMVCEDGHLSEFHCKNDLLQA
L*
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mRNA from alignment at tig00000088_pilon:614349..615854-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8613.t1 ID=Gchil8613.t1|Name=Gchil8613.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1506bp|location=Sequence derived from alignment at tig00000088_pilon:614349..615854- (Gracilaria chilensis NLEC103_M9 male)
ATGGACCTTCCCCGTCGCTCGCGCACACCCTCCGACACCACCCCTCTCAT
CATGCGCTCCCCCTCGCTGCCCCACTCCATCTCGCAGTCCGAGGTGCACG
CCGTGCGCGCCCGCACCGACATCGGCACCGCTAACGACACCTCCACCCGT
GTATACCCCGAAACCATCCACCGTCCAGCCCCCGTCCACCCGCCCGACTC
GCTTTCCACTCCTGACCGCAACCGCCGCCTCTCCCTCGACGGTGAACTCC
CGCCAAACGCCATTCGCCCCGACGACCCGCACGCCGAGCTCGAGGAAGAG
ACTCTGCGCGAGGGTTTGATCGATTTCATTCCCGACGCCTTCAGCAAACC
TATCGACGTGTCGGCATGTTCCAAGGCTGGTTGGGAACCGTTGCGAGATT
CGTCCATGCCCGTGGCCCCGATGCATACCGTCGAGGTACGCAAGGAGAAT
CAGGATGCATTTTGTGCGCTTGCCCCATTTGTTATCGTCCCGGCCGCCCC
TAACGATACCAAGGGACAGCGCCAGATTTTTCTTGGCGTCTTTGATGGCC
ATGGTGCCGAGGGACGCCCCATAGCCCACTATGCGCGCGATTATATCGTC
GCCACAGCGCGTGAGGCTGCCCCGTCACTCGCCTTTTCCCATTCCCACAA
GCAGCACCCTGTGCCGCCTCAGCTGCACCGCGAACGCCTCAACCTGCTCC
AGGCCGCTTTTTCTCGCGCAGAGCGTGCGCTCACTGAGACAGAGCCGCCC
ATCGACCATGTGTTTTCCGGCACCACCGCCGTGGTAGCCTGGATATTCGG
CCGCGACGTCTACACCGCTTGGACGGGCGACTCACGCTGTGTCATTGGAC
GAGTGTGTTCCACGGACCAGGGTCGCGTTCGTTTCAAGGCCATTGACCTC
AGTCATGACCAAAAACCTACGCGCGCCGACGAAAAACGTCGTGTGCGCGC
TGCTGGCGGGCGAATTGCTAGATGGCATCGGAATTCGGGACCATTGCGTG
TGTGGCTGCCGCGTGATTGGACGCCTGGGCTGGCTATGACGCGGAGCATC
GGCGACACCGTACTGAGCGAGTACGGTGTGAGGCCGGTTCCGGAGGTTTC
GTTCACCACGTTGGGCTCGCACGATAGTTTTATTGTACTTGCCAGCGATG
GGGTGTGGGAGTTTATGACGAGCCAGGAAGTGGTGGAATTCATTGGGCGC
ATGCGGAGAGAAGGGCGGAGCGCGAATGATGCCGCCGAGGCTCTTGTGCG
CGAGGCTGTACGAAGGTGGCGGCGTAATGAGGTGGTGGTGGATGATACAA
CGGCCGTGGTCGTATGGCTGGCGTTAGATGACGATGGGGAGGAGGACAAG
AAAGCGAGCGAGTCGCCGTTGTCAAGACATCGAAGACTGTTTTCAATGGC
CAGAGCAAGAGTTGGGAAACATCATTCGCATGGTGTGCAAATGGTTTGCG
AAGACGGACATCTTTCGGAGTTTCATTGTAAGAATGACCTTTTGCAGGCT
TTGTGA
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Coding sequence (CDS) from alignment at tig00000088_pilon:614349..615854-

>Gchil8613.t1 ID=Gchil8613.t1|Name=Gchil8613.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1506bp|location=Sequence derived from alignment at tig00000088_pilon:614349..615854- (Gracilaria chilensis NLEC103_M9 male)
ATGGACCTTCCCCGTCGCTCGCGCACACCCTCCGACACCACCCCTCTCAT
CATGCGCTCCCCCTCGCTGCCCCACTCCATCTCGCAGTCCGAGGTGCACG
CCGTGCGCGCCCGCACCGACATCGGCACCGCTAACGACACCTCCACCCGT
GTATACCCCGAAACCATCCACCGTCCAGCCCCCGTCCACCCGCCCGACTC
GCTTTCCACTCCTGACCGCAACCGCCGCCTCTCCCTCGACGGTGAACTCC
CGCCAAACGCCATTCGCCCCGACGACCCGCACGCCGAGCTCGAGGAAGAG
ACTCTGCGCGAGGGTTTGATCGATTTCATTCCCGACGCCTTCAGCAAACC
TATCGACGTGTCGGCATGTTCCAAGGCTGGTTGGGAACCGTTGCGAGATT
CGTCCATGCCCGTGGCCCCGATGCATACCGTCGAGGTACGCAAGGAGAAT
CAGGATGCATTTTGTGCGCTTGCCCCATTTGTTATCGTCCCGGCCGCCCC
TAACGATACCAAGGGACAGCGCCAGATTTTTCTTGGCGTCTTTGATGGCC
ATGGTGCCGAGGGACGCCCCATAGCCCACTATGCGCGCGATTATATCGTC
GCCACAGCGCGTGAGGCTGCCCCGTCACTCGCCTTTTCCCATTCCCACAA
GCAGCACCCTGTGCCGCCTCAGCTGCACCGCGAACGCCTCAACCTGCTCC
AGGCCGCTTTTTCTCGCGCAGAGCGTGCGCTCACTGAGACAGAGCCGCCC
ATCGACCATGTGTTTTCCGGCACCACCGCCGTGGTAGCCTGGATATTCGG
CCGCGACGTCTACACCGCTTGGACGGGCGACTCACGCTGTGTCATTGGAC
GAGTGTGTTCCACGGACCAGGGTCGCGTTCGTTTCAAGGCCATTGACCTC
AGTCATGACCAAAAACCTACGCGCGCCGACGAAAAACGTCGTGTGCGCGC
TGCTGGCGGGCGAATTGCTAGATGGCATCGGAATTCGGGACCATTGCGTG
TGTGGCTGCCGCGTGATTGGACGCCTGGGCTGGCTATGACGCGGAGCATC
GGCGACACCGTACTGAGCGAGTACGGTGTGAGGCCGGTTCCGGAGGTTTC
GTTCACCACGTTGGGCTCGCACGATAGTTTTATTGTACTTGCCAGCGATG
GGGTGTGGGAGTTTATGACGAGCCAGGAAGTGGTGGAATTCATTGGGCGC
ATGCGGAGAGAAGGGCGGAGCGCGAATGATGCCGCCGAGGCTCTTGTGCG
CGAGGCTGTACGAAGGTGGCGGCGTAATGAGGTGGTGGTGGATGATACAA
CGGCCGTGGTCGTATGGCTGGCGTTAGATGACGATGGGGAGGAGGACAAG
AAAGCGAGCGAGTCGCCGTTGTCAAGACATCGAAGACTGTTTTCAATGGC
CAGAGCAAGAGTTGGGAAACATCATTCGCATGGTGTGCAAATGGTTTGCG
AAGACGGACATCTTTCGGAGTTTCATTGTAAGAATGACCTTTTGCAGGCT
TTGTGA
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