Gchil8557.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8557.t1
Unique NameGchil8557.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length301
Homology
BLAST of Gchil8557.t1 vs. uniprot
Match: A0A2V3IXW1_9FLOR (RNA exonuclease 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXW1_9FLOR)

HSP 1 Score: 385 bits (990), Expect = 1.000e-131
Identity = 197/285 (69.12%), Postives = 229/285 (80.35%), Query Frame = 0
Query:    4 FVREAVLASLRNDKKLDNGLAEENHSEIKPNTSATALNNIKQTTASKRKRVDSNWKQLQKTLPKTALRNTKRKRTLNETDESSADTPQDASHVSSFMNRPVFKTDQVTDIVAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDSFVKVKERVTDYRTKWSGVKPEDVASNSSKAVEPYEAQKAVGDVIRGRIVVGHALKNDLKVLRISHPWQDVRDTSIFFKRLWKTQGRRTGVGPKLSVVVAEVLGVDTFQKSEHDSCEDARAALALYKRHRKAWESSLKRGK 288
            FVREAVLASLRNDKKLD  ++  +  E   +                  R+ SNWKQLQK+LPKT LR +KR+R +  ++    +  +  S VSSFM RPV  T+++TDIV MDCEMVGVGPDGKQNALARVSVVNYSGDVLYD FVKVKERVTDYRT+WSGVK EDV+ +S  AVE YEAQKAVG++I GRIVVGHAL+ND+KVLRISHPWQD+RDT+++FKR+W+ QGRR+ VGPKLSVVVAEVLGVDTFQKSEHDSCEDARAALALYKRHRK WE+SLK+GK
Sbjct:   16 FVREAVLASLRNDKKLDAEISSNDAEEKAASXXXXXXXXXXXXXXXXXXRISSNWKQLQKSLPKTVLRGSKRQRKVERSETQEDEVNEAVSQVSSFMKRPVVNTNEITDIVGMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDKFVKVKERVTDYRTQWSGVKAEDVSPDSCTAVEAYEAQKAVGELIAGRIVVGHALRNDIKVLRISHPWQDIRDTAVYFKRVWRKQGRRSAVGPKLSVVVAEVLGVDTFQKSEHDSCEDARAALALYKRHRKEWEASLKQGK 300          
BLAST of Gchil8557.t1 vs. uniprot
Match: UPI00077BA19D (RNA exonuclease 4 n=1 Tax=Tetranychus urticae TaxID=32264 RepID=UPI00077BA19D)

HSP 1 Score: 169 bits (429), Expect = 2.740e-48
Identity = 90/176 (51.14%), Postives = 118/176 (67.05%), Query Frame = 0
Query:  110 VTDIVAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDSFVKVKERVTDYRTKWSGVKPEDVASNSSKAVEPYEAQKAVGDVIRGRIVVGHALKNDLKVLRISHPWQDVRDTSIFFKRLWKTQGRRTGVGPKLSVVVAEVLGVDTFQKSEHDSCEDARAALALYKRHRKAWESSLK 285
            +T  V MDCEMVGVG  G Q+ LARVS+VN  G  LYD +VK  E VTDYRT  SG++PED+ +        Y+    V D+I+GRI+VGHALKNDLKVL + HP   +RDTS++FK++ K  G+     P L  + +++LGVD  Q  EHDS +DARAA+ LY  ++K WES +K
Sbjct:   42 LTRTVGMDCEMVGVGDKGTQSILARVSLVNQFGHCLYDKYVKPTEPVTDYRTSVSGIRPEDIENGEDFKKVQYD----VNDIIKGRILVGHALKNDLKVLFLDHPRSRIRDTSVYFKKMLKGGGK-----PSLKRLTSQLLGVD-IQHGEHDSVQDARAAMRLYTMYKKKWESEIK 207          
BLAST of Gchil8557.t1 vs. uniprot
Match: D8M1R3_BLAHO (RNA exonuclease 4 n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M1R3_BLAHO)

HSP 1 Score: 165 bits (417), Expect = 4.840e-46
Identity = 99/242 (40.91%), Postives = 149/242 (61.57%), Query Frame = 0
Query:   50 KRKRVDSNWKQLQKTLPKTALRN---TKRKRTLNETDESSADTPQDASHVSSFMNRPVFKTDQVTDIVAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDSFVKVKERVTDYRTKWSGVKPEDVASNSSKAVEPYEAQKAVGDVIRGRIVVGHALKNDLKVLRISHPWQDVRDTSIF--FKRLWKTQGRRTGVGPKLSVVVAEVLGVDTFQKSEHDSCEDARAALALYKRHRKAWESSLKR 286
            K+ ++ SNW+ ++K +    LRN    KR+R   E  E S  +P+   ++ + +N     T   T +VA+DCEMVGVGP+  ++ALAR+S+VNY G +LYDSFVK    VTDYRT+WSG++PED+  +  + V   EAQ     +++ RIVVGH++ ND + L + HP + +RDT+ +  F R WK +     +  KL  ++    G    Q+ EHDS +DARA L LYK++R  WE+ +K+
Sbjct:   18 KKAKIGSNWESMKKLI----LRNPAEAKRRRLREENPEKSV-SPKTLVNLEALLNPDGSGTASDTPVVAIDCEMVGVGPNN-ESALARISIVNYYGAILYDSFVKPPSAVTDYRTQWSGIRPEDLEGD--RVVTLREAQDVADRLMKNRIVVGHSISNDFEALMMHHPRRLIRDTAYYRPFMRKWKNKW----LPHKLQYLLKREFGT-AIQEGEHDSIDDARATLLLYKKYRVEWENEIKK 246          
BLAST of Gchil8557.t1 vs. uniprot
Match: D3PK31_LEPSM (RNA exonuclease 4 n=3 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=D3PK31_LEPSM)

HSP 1 Score: 167 bits (422), Expect = 5.390e-46
Identity = 89/182 (48.90%), Postives = 126/182 (69.23%), Query Frame = 0
Query:  110 VTDIVAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDSFVKVKERVTDYRTKWSGVKPEDVASNSSKAVEPYEAQKAVGDVIRGRIVVGHALKNDLKVLRISHPWQDVRDTSIF--FKRLWKTQGRRTGVGPKLSVVVAEVLGVDTFQKSEHDSCEDARAALALYKRHRKAWESSLKRGKS 289
            +T I+ MDCEMVGVG +G ++ LAR S+VN+ G  +YD FVK  E+VTDYRT  SG++P+D+A    K +E    Q+ + ++I+GRI+VGHA+K+DLKVL +SHP + +RDTSI+  F++++       G  P L  + A +L V+  Q+ EH   EDARAA+ LY  HRK WE+SLK+ KS
Sbjct:  126 LTKIIGMDCEMVGVGFNGARSILARASIVNHFGKTIYDKFVKPSEKVTDYRTDVSGIRPKDIA----KGIEFKVVQEEISEIIKGRILVGHAIKHDLKVLYLSHPKKYIRDTSIYKPFRKIFD------GRTPSLKKLTATILSVNV-QEGEHSPVEDARAAVRLYTMHRKEWENSLKKNKS 296          
BLAST of Gchil8557.t1 vs. uniprot
Match: A0A6P4B3V8_ARADU (RNA exonuclease 4 n=3 Tax=Arachis TaxID=3817 RepID=A0A6P4B3V8_ARADU)

HSP 1 Score: 165 bits (417), Expect = 7.350e-46
Identity = 107/244 (43.85%), Postives = 150/244 (61.48%), Query Frame = 0
Query:   49 SKRKRVDSNWKQLQKTLPKTALRNTKRKRTLNETDESSA------DTPQDASHVSSFMNR-PVFKTDQVTDIVAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDSFVKVKERVTDYRTKWSGVKPEDVASNSSKAVEPYEAQKAVGDVIRGRIVVGHALKNDLKVLRISHPWQDVRDTSIFFKRLWKTQGRRTGVGPKLSVVVAEVLGVDTFQKSEHDSCEDARAALALYKRHRKAWESSLK 285
            +K+  ++ NW QLQ+ L      N K  RT  E D   +      ++P D S  S      PV     +TD VA+DCEMVGVG  G ++AL RV++VN  G+VLYD FV+  ERV D+RTK SG++P D+     KA++ + AQK V ++++GRI+VGHAL+NDLK L +SHP +D+RDTS +   L      ++G    L  + AE+LG +  Q  EH   +DARAA+ LY+R+RK WE SL+
Sbjct:   12 AKQNLLNPNWVQLQQKLKL----NNKSSRTYKEEDTPKSILGKRKESPNDESDDSQIDPLIPVNDDSSLTDAVAIDCEMVGVG-QGNKSALGRVTMVNKWGNVLYDEFVRPVERVVDFRTKISGIRPRDL----KKAIDFWTAQKRVAELMKGRILVGHALQNDLKALLLSHPKKDIRDTSEYQPFL------KSGCRRALRHLAAEILGAE-IQSGEHCPIQDARAAMLLYQRNRKEWERSLR 239          
BLAST of Gchil8557.t1 vs. uniprot
Match: A0A6H5GWY8_9HEMI (RNA exonuclease 4 n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GWY8_9HEMI)

HSP 1 Score: 166 bits (420), Expect = 8.930e-46
Identity = 97/201 (48.26%), Postives = 128/201 (63.68%), Query Frame = 0
Query:   91 QDASHVSSFMNRPVFKTDQV---------TDIVAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDSFVKVKERVTDYRTKWSGVKPEDVASNSSKAVEPYEA-QKAVGDVIRGRIVVGHALKNDLKVLRISHPWQDVRDTSIFFKRLWKTQGRRTGVGPKLSVVVAEVLGVDTFQKSEHDSCEDARAALALYKRHRKAWE 281
            Q   H SSF  RP  +   V         T++VAMDCEMVG+G  G+++ LARVS+VN  G+ LYD FVK +E VTDYRT  SGV+ EDV +      E +E  QK V +++RGRI+VGH++KNDL+VL +SHP Q +RDT+ FF++     G RT   P L  +  + L V T Q+ EH S +DARAA+ LY  +RK WE
Sbjct:  103 QTIKHTSSFTERPKPRPPAVSKDSTKPKLTNVVAMDCEMVGIGEGGRESVLARVSIVNMMGECLYDKFVKPREPVTDYRTHVSGVRKEDVEN-----AEEFEVVQKEVAEILRGRILVGHSIKNDLEVLFLSHPRQRIRDTAKFFRK----GGART---PSLKNLANQYLDV-TIQEGEHSSVQDARAAVQLYNMYRKQWE 290          
BLAST of Gchil8557.t1 vs. uniprot
Match: A0A200PP56_9MAGN (RNA exonuclease 4 n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200PP56_9MAGN)

HSP 1 Score: 163 bits (412), Expect = 3.190e-45
Identity = 108/245 (44.08%), Postives = 148/245 (60.41%), Query Frame = 0
Query:   50 KRKRVDSNWKQLQKTLPKTALRNTK---------RKRTLNETDESSADTPQDASHVSSFMNRPVFKTDQVTDIVAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDSFVKVKERVTDYRTKWSGVKPEDVASNSSKAVEPYEAQKAVGDVIRGRIVVGHALKNDLKVLRISHPWQDVRDTSIFFKRLWKTQGRRTGVGPKLSVVVAEVLGVDTFQKSEHDSCEDARAALALYKRHRKAWESSLK 285
            KR  V+ NW QLQ+ L    LR +K         +K  L +  E S   P D S VS  +  P      +TD +AMDCEMVGV  +G ++AL RV++VN  G+V+YD +V+  ERV D+RT+ SG++P D+     KA +    QK V ++I GRI+VGHAL+NDLK L +SHP  D+RDTS +  R +  +GR+      L V+ AE LGV   Q  EH   EDARAA+ LY++++K WE S+K
Sbjct:    4 KRFPVNPNWLQLQEKLKSQGLRASKPSFGSEIETQKGILGKRKERSDAEPND-SPVSILI--PTNTDCSLTDEIAMDCEMVGVSSEGNKSALGRVTLVNTWGNVIYDEYVRPVERVVDFRTEISGIRPRDMR----KAKDFQSVQKKVAELINGRILVGHALRNDLKALLLSHPKNDIRDTSEY--RPFLKEGRKRA----LQVLAAEFLGVK-IQDGEHCPIEDARAAMLLYQKNKKGWEKSIK 234          
BLAST of Gchil8557.t1 vs. uniprot
Match: A0A3S3P4G3_9ACAR (RNA exonuclease 4 n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3P4G3_9ACAR)

HSP 1 Score: 164 bits (414), Expect = 3.920e-45
Identity = 90/178 (50.56%), Postives = 120/178 (67.42%), Query Frame = 0
Query:  108 DQVTDIVAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDSFVKVKERVTDYRTKWSGVKPEDVASNSSKAVEPYEAQKAVGDVIRGRIVVGHALKNDLKVLRISHPWQDVRDTSIFFKRLWKTQGRRTGVGPKLSVVVAEVLGVDTFQKSEHDSCEDARAALALYKRHRKAWESSLK 285
            D +T +VAMDCEMVGVG  G+Q+ LARVS+VN+ G  LYD FVK  E+VTDYRTK SG++P D+       V     QK V D+I+GRI+VGHA+ +DLKVL + HP + +RDTS +F+ +    G +T   P L  +  ++LGV + Q  EH+S EDAR A+ LY  HRKAW+  +K
Sbjct:  109 DGLTKVVAMDCEMVGVGKGGQQSILARVSIVNHFGHCLYDKFVKPTEKVTDYRTKVSGIRPRDIQDGQDFKV----VQKEVYDIIKGRILVGHAITHDLKVLFLDHPKKLIRDTSKYFRYV---SGGKT---PSLKRLSEQLLGV-SIQTGEHNSVEDARVAMRLYTMHRKAWDKYIK 275          
BLAST of Gchil8557.t1 vs. uniprot
Match: S8F4L1_FOMPI (RNA exonuclease 4 n=1 Tax=Fomitopsis pinicola (strain FP-58527) TaxID=743788 RepID=S8F4L1_FOMPI)

HSP 1 Score: 162 bits (409), Expect = 5.090e-45
Identity = 86/170 (50.59%), Postives = 116/170 (68.24%), Query Frame = 0
Query:  114 VAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDSFVKVKERVTDYRTKWSGVKPEDVASNSSKAVEPYEAQKAVGDVIRGRIVVGHALKNDLKVLRISHPWQDVRDTSIFFKR--LWKTQGRRTGVGPKLSVVVAEVLGVDTFQKSEHDSCEDARAALALYKRHRKAWE 281
            +A+DCEMVGVG +G++++LARVSVVNY G VL D FV+ +ERV DYRT+WSG++P+D+ + S  A    E Q+ V D+++ RI+VGHA+ NDLK L +SHPWQ  RDT ++  R  L KT+       P L  +V + LGV   Q  EH S  DARA +A+Y+ H K WE
Sbjct:   19 IALDCEMVGVGLEGRESSLARVSVVNYYGHVLLDVFVRQRERVVDYRTQWSGIRPKDMVNASPFA----EVQEKVADLLKDRILVGHAVHNDLKALLLSHPWQQTRDTQVYAHRHKLVKTKY------PALRNLVQQELGV-AIQSGEHSSVTDARATMAVYRLHLKEWE 177          
BLAST of Gchil8557.t1 vs. uniprot
Match: A0A371EVA7_MUCPR (RNA exonuclease 4 n=4 Tax=Phaseoleae TaxID=163735 RepID=A0A371EVA7_MUCPR)

HSP 1 Score: 162 bits (410), Expect = 7.270e-45
Identity = 109/245 (44.49%), Postives = 148/245 (60.41%), Query Frame = 0
Query:   50 KRKRVDSNWKQLQKTLPKTALRNTKRKRTLNETDESSADT--------PQDASHVSSFMNR-PVFKTDQVTDIVAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDSFVKVKERVTDYRTKWSGVKPEDVASNSSKAVEPYEAQKAVGDVIRGRIVVGHALKNDLKVLRISHPWQDVRDTSIFFKRLWKTQGRRTGVGPKLSVVVAEVLGVDTFQKSEHDSCEDARAALALYKRHRKAWESSLK 285
            K+ +++ NW QLQ+   K  L  +K  RT   +D+ + ++        P D S+        PV     +TD VAMDCEMVGVG  G ++AL RV++VN  G+V+YD FV+  ERV D+RTK SG++P D+     KA + + AQK V ++I GRI+VGHAL NDLK L +SHP +D+RDTS +   L KT  RR      L  + AE LG    Q  EH   EDARAA+ LY+R++K WE S+K
Sbjct:    5 KQAQMNPNWVQLQQ---KLKLNGSKASRTFKNSDDDTPESILGKRKERPDDESNDCEINPLVPVNDDSSLTDAVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTKISGIRPRDLR----KAKDFWIAQKKVAELIEGRILVGHALSNDLKALLLSHPKKDIRDTSEYQPFL-KTSSRRA-----LRHLAAEHLGAK-IQTGEHCPVEDARAAMLLYQRNKKEWEKSMK 234          
The following BLAST results are available for this feature:
BLAST of Gchil8557.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IXW1_9FLOR1.000e-13169.12RNA exonuclease 4 n=1 Tax=Gracilariopsis chorda Ta... [more]
UPI00077BA19D2.740e-4851.14RNA exonuclease 4 n=1 Tax=Tetranychus urticae TaxI... [more]
D8M1R3_BLAHO4.840e-4640.91RNA exonuclease 4 n=1 Tax=Blastocystis hominis Tax... [more]
D3PK31_LEPSM5.390e-4648.90RNA exonuclease 4 n=3 Tax=Lepeophtheirus salmonis ... [more]
A0A6P4B3V8_ARADU7.350e-4643.85RNA exonuclease 4 n=3 Tax=Arachis TaxID=3817 RepID... [more]
A0A6H5GWY8_9HEMI8.930e-4648.26RNA exonuclease 4 n=1 Tax=Nesidiocoris tenuis TaxI... [more]
A0A200PP56_9MAGN3.190e-4544.08RNA exonuclease 4 n=1 Tax=Macleaya cordata TaxID=5... [more]
A0A3S3P4G3_9ACAR3.920e-4550.56RNA exonuclease 4 n=1 Tax=Dinothrombium tinctorium... [more]
S8F4L1_FOMPI5.090e-4550.59RNA exonuclease 4 n=1 Tax=Fomitopsis pinicola (str... [more]
A0A371EVA7_MUCPR7.270e-4544.49RNA exonuclease 4 n=4 Tax=Phaseoleae TaxID=163735 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013520Exonuclease, RNase T/DNA polymerase IIISMARTSM00479exoiiienduscoord: 112..282
e-value: 5.6E-32
score: 122.2
IPR013520Exonuclease, RNase T/DNA polymerase IIIPFAMPF00929RNase_Tcoord: 114..273
e-value: 9.1E-12
score: 45.8
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 109..293
e-value: 2.2E-48
score: 166.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..100
NoneNo IPR availablePANTHERPTHR12801RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATEDcoord: 28..292
NoneNo IPR availablePANTHERPTHR12801:SF135RNA EXONUCLEASE 4coord: 28..292
IPR037431RNA exonuclease 4, DEDDh 3'-5' exonuclease domainCDDcd06144REX4_likecoord: 114..274
e-value: 9.16883E-74
score: 221.621
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 112..277

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:279711..280613 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8557.t1Gchil8557.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000088_pilon 279711..280613 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8557.t1 ID=Gchil8557.t1|Name=Gchil8557.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=301bp
MEGFVREAVLASLRNDKKLDNGLAEENHSEIKPNTSATALNNIKQTTASK
RKRVDSNWKQLQKTLPKTALRNTKRKRTLNETDESSADTPQDASHVSSFM
NRPVFKTDQVTDIVAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDSFV
KVKERVTDYRTKWSGVKPEDVASNSSKAVEPYEAQKAVGDVIRGRIVVGH
ALKNDLKVLRISHPWQDVRDTSIFFKRLWKTQGRRTGVGPKLSVVVAEVL
GVDTFQKSEHDSCEDARAALALYKRHRKAWESSLKRGKSRAASAGMASTN
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013520Exonuclease_RNaseT/DNA_pol3
IPR036397RNaseH_sf
IPR037431REX4_DEDDh_dom
IPR012337RNaseH-like_sf