Gchil8662.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil8662.t1
Unique Name	Gchil8662.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	237

Homology

[Close]

BLAST of Gchil8662.t1 vs. uniprot
Match: A0A2V3IX53_9FLOR (Omp85 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX53_9FLOR)

HSP 1 Score: 279 bits (714), Expect = 3.600e-88
Identity = 142/237 (59.92%), Postives = 175/237 (73.84%), Query Frame = 0

Query:    2 WKPKGFGPLMALGIFDYADAEVSILSNESVQLCLNLREKPSRKIEPGAGIFTDGRVFGDISVSDNNFMGRTHRLCVAWEKRIDEGRFSGGILFEDMRIGAHIPLSFKFKAYRDSSSKRGIPVNGWASEQ--RTHVHSPRDNLDFDLQLFYEKDRDGIVEDIGFRPRDAFMMSYLTTKIEIFHPNLFESLNFFTMSHVVLQNSFKQATRLLVQLPRHGIIFRIEHSVGNVLRSSNHPF 236
            W P GFG LMALGIF+YADAEV+ ++N  V+L L LRE+ + +IEPGAG+ +DGRVFGD+S+SDNNFMGR  RL VAW+KR+DEGR SGGILFEDMRIGA+ PLS+K KAYRDS+SKR IP N  +++Q  R  +H        D  LFYEKDRDG++ D+G+RP  ++MM  LT   EI HPNL  S +  T S VVLQ ++  ATRL V+LPR G   RIEHS+G+VLR S  PF
Sbjct:   97 WNPDGFGSLMALGIFEYADAEVNAIANHRVELVLYLRERSTGRIEPGAGMSSDGRVFGDLSISDNNFMGRAQRLRVAWQKRLDEGRSSGGILFEDMRIGANFPLSYKVKAYRDSTSKRAIPTNRLSTQQNDRPALH--------DDDLFYEKDRDGVMLDLGYRPNHSYMMFNLTPMYEIIHPNLVHSSSGLTTSQVVLQTAYTHATRLPVELPRAGHFARIEHSLGSVLRRSTRPF 325

[Close]

BLAST of Gchil8662.t1 vs. uniprot
Match: R7QVF7_CHOCR (Omp85 domain-containing protein n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QVF7_CHOCR)

HSP 1 Score: 184 bits (466), Expect = 9.750e-51
Identity = 94/236 (39.83%), Postives = 137/236 (58.05%), Query Frame = 0

Query:    2 WKPKGFGPLMALGIFDYADAEVSILSNESVQLCLNLREKPSRKIEPGAGIFTDGRVFGDISVSDNNFMGRTHRLCVAWEKRIDEGRFSGGILFEDMRIGAHIPLSFKFKAYRDSSSKRGIPVNGWASEQRTHVHSPRDNLDFDLQLFYEKDRDGIVEDIGFRPRDAFMMSYLTTKIEIFHPNLFESLNFFT-MSHVVLQNSFKQATRLLVQLPRHGIIFRIEHSVGNVLRSSNHPF 236
            W  +GF  LMALGIF+ AD +V  +S E V+L LN++E+P+ ++EPGAGI +DGR++GD+S  DNNF G+  R+ + W+KR+D  R +G + FEDMRIGA IP S+K +A+RD++S RG+P       +R            +  L YEKDRDG + ++G+RP     +  L +  E    N  E     T +   VLQ+S    TR  +  PR G +  +E S+G     +   F
Sbjct:  174 WTAEGFASLMALGIFESADVQVKSVSAERVELVLNVKERPTCRVEPGAGITSDGRMYGDVSFLDNNFRGKAQRIRIEWQKRLDSPRAAGCVAFEDMRIGARIPFSYKIRAFRDANSSRGVPATRSIGLRRPSGDDEVTRRGIETPLRYEKDRDGAMLELGYRPGSGNWLLLLNSVAESVQANPSERATPDTSIFQTVLQSSIAHMTRFPIDCPRSGHMLNVESSIGKTFNEAGTMF 409

The following BLAST results are available for this feature:

BLAST of Gchil8662.t1 vs. uniprot

BLAST of Gchil8662.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IX53_9FLOR	3.600e-88	59.92	Omp85 domain-containing protein n=1 Tax=Gracilario...	[more]
R7QVF7_CHOCR	9.750e-51	39.83	Omp85 domain-containing protein n=2 Tax=Chondrus c...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.160.50	membrane protein fhac: a member of the omp85/tpsb transporter family	coord: 44..236 e-value: 7.5E-6 score: 27.5
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..21
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..5
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 17..21
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 22..236
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 6..16

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:1059231..1059941 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8662.t1	Gchil8662.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00000088_pilon 1059231..1059941 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil8662.t1 ID=Gchil8662.t1|Name=Gchil8662.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=237bp
MWKPKGFGPLMALGIFDYADAEVSILSNESVQLCLNLREKPSRKIEPGAG
IFTDGRVFGDISVSDNNFMGRTHRLCVAWEKRIDEGRFSGGILFEDMRIG
AHIPLSFKFKAYRDSSSKRGIPVNGWASEQRTHVHSPRDNLDFDLQLFYE
KDRDGIVEDIGFRPRDAFMMSYLTTKIEIFHPNLFESLNFFTMSHVVLQN
SFKQATRLLVQLPRHGIIFRIEHSVGNVLRSSNHPF*