Gchil8662.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8662.t1
Unique Name	Gchil8662.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	237

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:1059231..1059941 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703263.1
Preferred name	OEP80
PFAMs	Bac_surface_Ag,POTRA
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K07277
KEGG TC	1.B.33
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006996,GO:0008150,GO:0009507,GO:0009526,GO:0009536,GO:0009657,GO:0009658,GO:0009941,GO:0009987,GO:0016020,GO:0016043,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0071840
Evalue	1.47e-12
EggNOG OGs	COG4775@1\|root,2QSQ3@2759\|Eukaryota
Description	chloroplast organization
COG category	M
BRITE	ko00000,ko02000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8662	Gchil8662	Gracilaria chilensis NLEC103_M9 male	gene	tig00000088_pilon 1059231..1059941 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8662.t1.start1	Gchil8662.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000088_pilon 1059231..1059233 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8662.t1.CDS1	Gchil8662.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000088_pilon 1059231..1059941 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8662.t1.exon1	Gchil8662.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000088_pilon 1059231..1059941 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8662.t1.stop1	Gchil8662.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000088_pilon 1059939..1059941 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8662.t1	Gchil8662.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000088_pilon 1059231..1059941 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:1059231..1059941+
coding sequence from alignment at tig00000088_pilon:1059231..1059941+

mRNA sequence

>Gchil8662.t1 ID=Gchil8662.t1|Name=Gchil8662.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=237bp
MWKPKGFGPLMALGIFDYADAEVSILSNESVQLCLNLREKPSRKIEPGAG
IFTDGRVFGDISVSDNNFMGRTHRLCVAWEKRIDEGRFSGGILFEDMRIG
AHIPLSFKFKAYRDSSSKRGIPVNGWASEQRTHVHSPRDNLDFDLQLFYE
KDRDGIVEDIGFRPRDAFMMSYLTTKIEIFHPNLFESLNFFTMSHVVLQN
SFKQATRLLVQLPRHGIIFRIEHSVGNVLRSSNHPF*

spliced messenger RNA

>Gchil8662.t1 ID=Gchil8662.t1|Name=Gchil8662.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=711bp|location=Sequence derived from alignment at tig00000088_pilon:1059231..1059941+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGAAGCCAAAGGGATTCGGCCCTCTTATGGCTCTAGGAATCTTTGA
CTATGCTGATGCTGAGGTGAGCATACTTTCCAACGAAAGCGTCCAGCTCT
GTTTGAATCTCCGCGAGAAGCCAAGCAGGAAAATAGAGCCAGGTGCTGGT
ATTTTTACAGATGGTCGAGTCTTTGGCGATATCAGTGTTTCGGACAACAA
TTTCATGGGCCGTACTCATCGACTATGCGTCGCTTGGGAAAAGAGAATTG
ACGAAGGGCGCTTCTCGGGCGGTATCCTTTTCGAAGACATGAGAATAGGA
GCACACATTCCTCTTTCTTTCAAGTTCAAAGCTTACCGTGATTCCAGTTC
AAAGCGTGGCATTCCTGTTAATGGCTGGGCGAGCGAACAGCGCACACATG
TCCACTCCCCTAGAGATAATCTCGATTTTGATTTGCAGCTTTTCTACGAA
AAGGACAGAGATGGTATCGTGGAAGATATCGGCTTTCGTCCGAGGGACGC
CTTTATGATGTCCTATTTGACCACCAAGATCGAGATCTTTCATCCTAATC
TATTTGAATCTTTAAATTTTTTTACCATGTCGCATGTGGTACTACAAAAT
TCGTTCAAGCAAGCTACGAGACTACTTGTGCAACTCCCGCGTCATGGTAT
TATTTTTAGAATCGAACACAGTGTCGGCAATGTGCTCCGGTCTTCAAATC
ACCCGTTTTAG

protein sequence of Gchil8662.t1

>Gchil8662.t1 ID=Gchil8662.t1|Name=Gchil8662.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=237bp
MWKPKGFGPLMALGIFDYADAEVSILSNESVQLCLNLREKPSRKIEPGAG
IFTDGRVFGDISVSDNNFMGRTHRLCVAWEKRIDEGRFSGGILFEDMRIG
AHIPLSFKFKAYRDSSSKRGIPVNGWASEQRTHVHSPRDNLDFDLQLFYE
KDRDGIVEDIGFRPRDAFMMSYLTTKIEIFHPNLFESLNFFTMSHVVLQN
SFKQATRLLVQLPRHGIIFRIEHSVGNVLRSSNHPF*

mRNA from alignment at tig00000088_pilon:1059231..1059941+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8662.t1 ID=Gchil8662.t1|Name=Gchil8662.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=711bp|location=Sequence derived from alignment at tig00000088_pilon:1059231..1059941+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGGAAGCCAAAGGGATTCGGCCCTCTTATGGCTCTAGGAATCTTTGA
CTATGCTGATGCTGAGGTGAGCATACTTTCCAACGAAAGCGTCCAGCTCT
GTTTGAATCTCCGCGAGAAGCCAAGCAGGAAAATAGAGCCAGGTGCTGGT
ATTTTTACAGATGGTCGAGTCTTTGGCGATATCAGTGTTTCGGACAACAA
TTTCATGGGCCGTACTCATCGACTATGCGTCGCTTGGGAAAAGAGAATTG
ACGAAGGGCGCTTCTCGGGCGGTATCCTTTTCGAAGACATGAGAATAGGA
GCACACATTCCTCTTTCTTTCAAGTTCAAAGCTTACCGTGATTCCAGTTC
AAAGCGTGGCATTCCTGTTAATGGCTGGGCGAGCGAACAGCGCACACATG
TCCACTCCCCTAGAGATAATCTCGATTTTGATTTGCAGCTTTTCTACGAA
AAGGACAGAGATGGTATCGTGGAAGATATCGGCTTTCGTCCGAGGGACGC
CTTTATGATGTCCTATTTGACCACCAAGATCGAGATCTTTCATCCTAATC
TATTTGAATCTTTAAATTTTTTTACCATGTCGCATGTGGTACTACAAAAT
TCGTTCAAGCAAGCTACGAGACTACTTGTGCAACTCCCGCGTCATGGTAT
TATTTTTAGAATCGAACACAGTGTCGGCAATGTGCTCCGGTCTTCAAATC
ACCCGTTTTAG

Coding sequence (CDS) from alignment at tig00000088_pilon:1059231..1059941+

>Gchil8662.t1 ID=Gchil8662.t1|Name=Gchil8662.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=711bp|location=Sequence derived from alignment at tig00000088_pilon:1059231..1059941+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGGAAGCCAAAGGGATTCGGCCCTCTTATGGCTCTAGGAATCTTTGA
CTATGCTGATGCTGAGGTGAGCATACTTTCCAACGAAAGCGTCCAGCTCT
GTTTGAATCTCCGCGAGAAGCCAAGCAGGAAAATAGAGCCAGGTGCTGGT
ATTTTTACAGATGGTCGAGTCTTTGGCGATATCAGTGTTTCGGACAACAA
TTTCATGGGCCGTACTCATCGACTATGCGTCGCTTGGGAAAAGAGAATTG
ACGAAGGGCGCTTCTCGGGCGGTATCCTTTTCGAAGACATGAGAATAGGA
GCACACATTCCTCTTTCTTTCAAGTTCAAAGCTTACCGTGATTCCAGTTC
AAAGCGTGGCATTCCTGTTAATGGCTGGGCGAGCGAACAGCGCACACATG
TCCACTCCCCTAGAGATAATCTCGATTTTGATTTGCAGCTTTTCTACGAA
AAGGACAGAGATGGTATCGTGGAAGATATCGGCTTTCGTCCGAGGGACGC
CTTTATGATGTCCTATTTGACCACCAAGATCGAGATCTTTCATCCTAATC
TATTTGAATCTTTAAATTTTTTTACCATGTCGCATGTGGTACTACAAAAT
TCGTTCAAGCAAGCTACGAGACTACTTGTGCAACTCCCGCGTCATGGTAT
TATTTTTAGAATCGAACACAGTGTCGGCAATGTGCTCCGGTCTTCAAATC
ACCCGTTTTAG