Gchil8629.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8629.t1
Unique NameGchil8629.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length305
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:831670..832584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog765420.OSCT_0516
PFAMsRmlD_sub_bind
Max annot lvl32061|Chloroflexia
KEGG rclassRC00182
KEGG koko:K00067
KEGG ReactionR02777
KEGG Pathwayko00521,ko00523,ko01130,map00521,map00523,map01130
KEGG ModuleM00793
Evalue4.41e-23
EggNOG OGsCOG1091@1|root,COG1091@2|Bacteria,2G9A2@200795|Chloroflexi,375MR@32061|Chloroflexia
EC1.1.1.133
DescriptionPFAM NAD-dependent epimerase dehydratase
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8629Gchil8629Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 831670..832584 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8629.t1.stop1Gchil8629.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 831670..831672 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8629.t1.CDS1Gchil8629.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 831670..832584 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8629.t1.exon1Gchil8629.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 831670..832584 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8629.t1.start1Gchil8629.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 832582..832584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8629.t1Gchil8629.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 831670..832584 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8629.t1 ID=Gchil8629.t1|Name=Gchil8629.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=305bp
MGPLVIIGGTGELGFKTVLAACAEGSTAWPGDIIATYNNSAPHLGLPRVT
WVKLDCADHKAVRSLIVSLCDLAAVVYCAVPKHGGAAGAGGALVRAGIVD
DVLNCAEAVALVGARFVAISTDLVFDGRIPPGKCYDEASSTCPPNPYGEY
KQQMEKQLLALSGKIVIARTSLILTMDEPPYGKGIQFVLDCIEGKKGEIE
LFTDELRNMSFSDDLGRALVELAKPQCAHLGVIHMVSDEVTNRWELAKLL
AKRLSIEHKLGKFAKSGLSANSGLGRPLNCSLSTKLKNKVLETHIDGISE
RMSK*
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spliced messenger RNA

>Gchil8629.t1 ID=Gchil8629.t1|Name=Gchil8629.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00000088_pilon:831670..832584- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCCTCTCGTCATTATCGGAGGCACCGGCGAGCTCGGCTTCAAGAC
TGTGCTTGCTGCCTGCGCAGAAGGCTCCACCGCGTGGCCCGGCGACATCA
TCGCCACCTACAACAATAGCGCGCCGCATCTCGGCCTGCCACGCGTCACG
TGGGTCAAGCTCGATTGCGCCGATCACAAGGCTGTGCGCTCGCTCATCGT
CTCGCTCTGCGACCTGGCTGCCGTAGTGTATTGTGCCGTCCCTAAGCACG
GCGGCGCAGCCGGCGCCGGCGGCGCGCTTGTGCGCGCCGGCATTGTTGAT
GACGTGCTCAACTGCGCCGAGGCTGTTGCATTGGTTGGCGCCAGGTTTGT
TGCCATCTCCACCGATTTGGTGTTTGATGGTCGCATCCCGCCGGGCAAGT
GCTACGATGAGGCCAGCAGCACCTGCCCGCCTAATCCGTACGGCGAATAC
AAGCAGCAGATGGAAAAGCAGCTGCTGGCTTTATCTGGCAAGATTGTTAT
TGCGCGCACCAGTTTGATTCTCACCATGGATGAACCGCCGTACGGAAAGG
GAATTCAGTTTGTTCTCGATTGCATCGAGGGCAAAAAGGGTGAAATCGAA
CTCTTCACCGATGAGTTACGGAACATGTCCTTCTCAGATGATCTTGGACG
AGCACTTGTGGAGCTTGCCAAGCCTCAATGCGCTCATTTAGGCGTCATTC
ACATGGTCAGTGATGAGGTTACCAATAGATGGGAGCTGGCCAAGCTGCTG
GCGAAGCGCCTCTCGATCGAGCACAAGCTTGGAAAGTTTGCTAAAAGTGG
CCTTTCTGCCAACAGCGGCCTTGGCCGCCCGCTAAACTGTTCTCTATCAA
CCAAGTTGAAGAACAAGGTACTCGAAACGCATATTGATGGCATCTCCGAA
CGAATGTCCAAATAG
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protein sequence of Gchil8629.t1

>Gchil8629.t1 ID=Gchil8629.t1|Name=Gchil8629.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=305bp
MGPLVIIGGTGELGFKTVLAACAEGSTAWPGDIIATYNNSAPHLGLPRVT
WVKLDCADHKAVRSLIVSLCDLAAVVYCAVPKHGGAAGAGGALVRAGIVD
DVLNCAEAVALVGARFVAISTDLVFDGRIPPGKCYDEASSTCPPNPYGEY
KQQMEKQLLALSGKIVIARTSLILTMDEPPYGKGIQFVLDCIEGKKGEIE
LFTDELRNMSFSDDLGRALVELAKPQCAHLGVIHMVSDEVTNRWELAKLL
AKRLSIEHKLGKFAKSGLSANSGLGRPLNCSLSTKLKNKVLETHIDGISE
RMSK*
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mRNA from alignment at tig00000088_pilon:831670..832584-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8629.t1 ID=Gchil8629.t1|Name=Gchil8629.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00000088_pilon:831670..832584- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCCCTCTCGTCATTATCGGAGGCACCGGCGAGCTCGGCTTCAAGAC
TGTGCTTGCTGCCTGCGCAGAAGGCTCCACCGCGTGGCCCGGCGACATCA
TCGCCACCTACAACAATAGCGCGCCGCATCTCGGCCTGCCACGCGTCACG
TGGGTCAAGCTCGATTGCGCCGATCACAAGGCTGTGCGCTCGCTCATCGT
CTCGCTCTGCGACCTGGCTGCCGTAGTGTATTGTGCCGTCCCTAAGCACG
GCGGCGCAGCCGGCGCCGGCGGCGCGCTTGTGCGCGCCGGCATTGTTGAT
GACGTGCTCAACTGCGCCGAGGCTGTTGCATTGGTTGGCGCCAGGTTTGT
TGCCATCTCCACCGATTTGGTGTTTGATGGTCGCATCCCGCCGGGCAAGT
GCTACGATGAGGCCAGCAGCACCTGCCCGCCTAATCCGTACGGCGAATAC
AAGCAGCAGATGGAAAAGCAGCTGCTGGCTTTATCTGGCAAGATTGTTAT
TGCGCGCACCAGTTTGATTCTCACCATGGATGAACCGCCGTACGGAAAGG
GAATTCAGTTTGTTCTCGATTGCATCGAGGGCAAAAAGGGTGAAATCGAA
CTCTTCACCGATGAGTTACGGAACATGTCCTTCTCAGATGATCTTGGACG
AGCACTTGTGGAGCTTGCCAAGCCTCAATGCGCTCATTTAGGCGTCATTC
ACATGGTCAGTGATGAGGTTACCAATAGATGGGAGCTGGCCAAGCTGCTG
GCGAAGCGCCTCTCGATCGAGCACAAGCTTGGAAAGTTTGCTAAAAGTGG
CCTTTCTGCCAACAGCGGCCTTGGCCGCCCGCTAAACTGTTCTCTATCAA
CCAAGTTGAAGAACAAGGTACTCGAAACGCATATTGATGGCATCTCCGAA
CGAATGTCCAAATAG
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Coding sequence (CDS) from alignment at tig00000088_pilon:831670..832584-

>Gchil8629.t1 ID=Gchil8629.t1|Name=Gchil8629.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=915bp|location=Sequence derived from alignment at tig00000088_pilon:831670..832584- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCCCTCTCGTCATTATCGGAGGCACCGGCGAGCTCGGCTTCAAGAC
TGTGCTTGCTGCCTGCGCAGAAGGCTCCACCGCGTGGCCCGGCGACATCA
TCGCCACCTACAACAATAGCGCGCCGCATCTCGGCCTGCCACGCGTCACG
TGGGTCAAGCTCGATTGCGCCGATCACAAGGCTGTGCGCTCGCTCATCGT
CTCGCTCTGCGACCTGGCTGCCGTAGTGTATTGTGCCGTCCCTAAGCACG
GCGGCGCAGCCGGCGCCGGCGGCGCGCTTGTGCGCGCCGGCATTGTTGAT
GACGTGCTCAACTGCGCCGAGGCTGTTGCATTGGTTGGCGCCAGGTTTGT
TGCCATCTCCACCGATTTGGTGTTTGATGGTCGCATCCCGCCGGGCAAGT
GCTACGATGAGGCCAGCAGCACCTGCCCGCCTAATCCGTACGGCGAATAC
AAGCAGCAGATGGAAAAGCAGCTGCTGGCTTTATCTGGCAAGATTGTTAT
TGCGCGCACCAGTTTGATTCTCACCATGGATGAACCGCCGTACGGAAAGG
GAATTCAGTTTGTTCTCGATTGCATCGAGGGCAAAAAGGGTGAAATCGAA
CTCTTCACCGATGAGTTACGGAACATGTCCTTCTCAGATGATCTTGGACG
AGCACTTGTGGAGCTTGCCAAGCCTCAATGCGCTCATTTAGGCGTCATTC
ACATGGTCAGTGATGAGGTTACCAATAGATGGGAGCTGGCCAAGCTGCTG
GCGAAGCGCCTCTCGATCGAGCACAAGCTTGGAAAGTTTGCTAAAAGTGG
CCTTTCTGCCAACAGCGGCCTTGGCCGCCCGCTAAACTGTTCTCTATCAA
CCAAGTTGAAGAACAAGGTACTCGAAACGCATATTGATGGCATCTCCGAA
CGAATGTCCAAATAG
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