Gchil8550.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8550.t1
Unique NameGchil8550.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length276
Homology
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BLAST of Gchil8550.t1 vs. uniprot
Match: A0A2V3IZ05_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ05_9FLOR)

HSP 1 Score: 255 bits (652), Expect = 1.230e-81
Identity = 128/247 (51.82%), Postives = 165/247 (66.80%), Query Frame = 0 
Query:   34 RIYTSALFLPGSPTLEPSPQTLPAASFAVYLHCADHQVRVSQPLTASFQSYRTASLKALLCALQLCNCLCLQHVHVVCDDDVLVDLFNA-----CESSAQSNPGQDEHLTSSENMALWRAIQVMDDAFKVRGAFLQILPNNGADGMHIARQLARSAITMHQYCSRCKSNYGPLRTPHSCEADQQPPLKRTGSLVEGTDDYGRARIVAAVCPKCSATFEHLHELERHVECDCPEVLEEWFAHTKIVKN 275
             +Y +A F P +    PS QT+ AA++AVYLH ++H +R++QPL    Q+YRTA L+++L AL+L NCLCL +V +  DD  LV+LF+         + +S P       S E+MALWRAI  + D F  RGA LQ++       +   R L  SA+  H+YCS C+ NYGPL TPH C    QP LKRTGSLVE TD YGR +IV AVCP+CSA F+HLH+LERHVE DCPE+L+EWFAHTKIVK+
Sbjct:   25 ELYAAAFFRPPTAHRAPSKQTVAAATYAVYLHTSEHHLRLAQPLVTPHQTYRTAVLQSVLSALELANCLCLPYVRLCVDDAQLVNLFHVERPRRLADTVRSAPAD---FASPEDMALWRAILSLADTFSERGATLQLIQAQSCQSLRTVRSLCESAVHQHEYCSNCECNYGPLFTPHDCGPAYQPSLKRTGSLVERTDAYGRPQIVEAVCPRCSAKFQHLHQLERHVESDCPELLDEWFAHTKIVKD 268
The following BLAST results are available for this feature:
BLAST of Gchil8550.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IZ05_9FLOR1.230e-8151.82Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 274..275
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 57..125
e-value: 1.1E-5
score: 25.2
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 39..187
e-value: 1.0E-6
score: 30.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:240994..241821 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8550.t1Gchil8550.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000088_pilon 240994..241821 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8550.t1 ID=Gchil8550.t1|Name=Gchil8550.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=276bp
MPTLNDNKEQASLDVCAPCPLEDCGDDPNFLPTRIYTSALFLPGSPTLEP
SPQTLPAASFAVYLHCADHQVRVSQPLTASFQSYRTASLKALLCALQLCN
CLCLQHVHVVCDDDVLVDLFNACESSAQSNPGQDEHLTSSENMALWRAIQ
VMDDAFKVRGAFLQILPNNGADGMHIARQLARSAITMHQYCSRCKSNYGP
LRTPHSCEADQQPPLKRTGSLVEGTDDYGRARIVAAVCPKCSATFEHLHE
LERHVECDCPEVLEEWFAHTKIVKN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002156RNaseH_domain
IPR036397RNaseH_sf