Gchil8563.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8563.t1
Unique NameGchil8563.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length381
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:290457..291599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog31033.ENSTRUP00000007338
Preferred nameFANCL
PFAMsFANCL_C,WD-3
Max annot lvl33208|Metazoa
KEGG koko:K10606
KEGG Pathwayko03460,ko04120,map03460,map04120
KEGG ModuleM00413
GOsGO:0000003,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006464,GO:0006513,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007276,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016567,GO:0016604,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019953,GO:0022414,GO:0031625,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032446,GO:0032501,GO:0032504,GO:0032991,GO:0033554,GO:0034641,GO:0036211,GO:0036297,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043240,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0046483,GO:0048609,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051716,GO:0061630,GO:0061659,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0090304,GO:0140096,GO:1901360,GO:1901564
Evalue1.83e-83
EggNOG OGsKOG3268@1|root,KOG3268@2759|Eukaryota,38SWP@33154|Opisthokonta,3BHKX@33208|Metazoa,3CZA1@33213|Bilateria,47ZU0@7711|Chordata,495KW@7742|Vertebrata,49TB8@7898|Actinopterygii
EC2.3.2.27
DescriptionFanconi anemia, complementation group L
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko03400,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8563Gchil8563Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 290457..291599 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8563.t1.stop1Gchil8563.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 290457..290459 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8563.t1.CDS1Gchil8563.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 290457..291599 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8563.t1.exon1Gchil8563.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 290457..291599 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8563.t1.start1Gchil8563.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 291597..291599 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8563.t1Gchil8563.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 290457..291599 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8563.t1 ID=Gchil8563.t1|Name=Gchil8563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=381bp
MAISVQALQRLITDFPAIVPQDPDLNNFAGFLSVRQRHFRVTITANCSQF
CGDSHLSSLLAPHKQVLNKRLKNAVDPHEFLVEVRDLIERALAASSKHYS
DPQVTLPPSIYYERLLAEIDSVGWNRVESIDKAMHTLHLIISDVANRKHL
IIITLPVSFPSQPPLCKANLPLQFEPNLSDKNVFIDILRQYEQLIDKLQP
FFRVMDDFDRNSCVLEPERPARHDCYRRICITKHCSIRVEIDPRTPITGF
PECRFLGSENAVAPYKHRLNQNIHQWDISGNKLPRENLEKVLEFSFPSRE
SLLEDADDVLLDECGICYSYRLEDHVPDIACDLKECSKPYHRQCLVDWLR
ALPDTRQSFDTITGNCVYCEHPIVVSMKSV*
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spliced messenger RNA

>Gchil8563.t1 ID=Gchil8563.t1|Name=Gchil8563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00000088_pilon:290457..291599- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAATAAGCGTGCAAGCCCTCCAGCGTCTCATCACCGATTTCCCTGC
CATTGTTCCGCAAGACCCCGACCTTAACAACTTCGCCGGCTTCCTCAGCG
TGCGTCAGCGCCACTTTCGAGTCACAATAACCGCAAACTGTTCTCAATTC
TGCGGAGACAGCCATCTGTCATCTCTTCTTGCCCCACACAAACAAGTTCT
TAACAAGAGACTTAAAAACGCAGTAGATCCCCACGAATTCCTTGTTGAAG
TGCGTGACCTTATTGAGAGGGCCCTTGCTGCATCCTCCAAACACTACTCC
GATCCTCAAGTTACATTACCTCCTTCCATCTATTACGAGCGCCTTCTTGC
GGAGATAGACTCGGTTGGATGGAATAGAGTTGAGTCTATTGACAAAGCCA
TGCATACATTACACTTGATCATCTCTGACGTGGCAAACAGAAAACACCTT
ATTATCATTACGCTCCCAGTTAGCTTCCCATCCCAACCTCCACTCTGCAA
AGCAAATCTACCGCTACAGTTTGAACCAAATCTTTCTGACAAAAACGTCT
TCATTGACATACTTCGGCAATATGAGCAGTTAATTGACAAACTTCAGCCC
TTCTTTCGAGTCATGGACGACTTCGATCGTAATTCTTGCGTCCTCGAACC
CGAACGCCCCGCCCGCCACGACTGTTACAGAAGAATATGCATTACAAAGC
ATTGTTCCATACGCGTAGAAATCGATCCCCGCACCCCTATCACCGGTTTC
CCTGAATGTAGGTTTCTTGGTTCTGAGAATGCGGTTGCACCATACAAACA
CCGTTTGAATCAAAACATTCACCAGTGGGACATCAGTGGAAACAAGCTTC
CCCGCGAGAATCTTGAGAAAGTGTTGGAGTTCAGCTTTCCGTCTCGAGAA
TCGCTGTTAGAGGACGCCGACGATGTGCTATTGGACGAATGTGGGATTTG
TTATTCATACAGGTTGGAGGACCACGTTCCTGATATCGCATGCGACTTGA
AGGAGTGCTCAAAACCTTATCATCGCCAATGCCTCGTGGATTGGTTACGT
GCTTTGCCAGATACACGACAGAGTTTTGATACTATCACCGGCAACTGCGT
GTACTGTGAACATCCCATCGTTGTGTCCATGAAATCCGTCTAG
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protein sequence of Gchil8563.t1

>Gchil8563.t1 ID=Gchil8563.t1|Name=Gchil8563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=381bp
MAISVQALQRLITDFPAIVPQDPDLNNFAGFLSVRQRHFRVTITANCSQF
CGDSHLSSLLAPHKQVLNKRLKNAVDPHEFLVEVRDLIERALAASSKHYS
DPQVTLPPSIYYERLLAEIDSVGWNRVESIDKAMHTLHLIISDVANRKHL
IIITLPVSFPSQPPLCKANLPLQFEPNLSDKNVFIDILRQYEQLIDKLQP
FFRVMDDFDRNSCVLEPERPARHDCYRRICITKHCSIRVEIDPRTPITGF
PECRFLGSENAVAPYKHRLNQNIHQWDISGNKLPRENLEKVLEFSFPSRE
SLLEDADDVLLDECGICYSYRLEDHVPDIACDLKECSKPYHRQCLVDWLR
ALPDTRQSFDTITGNCVYCEHPIVVSMKSV*
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mRNA from alignment at tig00000088_pilon:290457..291599-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8563.t1 ID=Gchil8563.t1|Name=Gchil8563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00000088_pilon:290457..291599- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAATAAGCGTGCAAGCCCTCCAGCGTCTCATCACCGATTTCCCTGC
CATTGTTCCGCAAGACCCCGACCTTAACAACTTCGCCGGCTTCCTCAGCG
TGCGTCAGCGCCACTTTCGAGTCACAATAACCGCAAACTGTTCTCAATTC
TGCGGAGACAGCCATCTGTCATCTCTTCTTGCCCCACACAAACAAGTTCT
TAACAAGAGACTTAAAAACGCAGTAGATCCCCACGAATTCCTTGTTGAAG
TGCGTGACCTTATTGAGAGGGCCCTTGCTGCATCCTCCAAACACTACTCC
GATCCTCAAGTTACATTACCTCCTTCCATCTATTACGAGCGCCTTCTTGC
GGAGATAGACTCGGTTGGATGGAATAGAGTTGAGTCTATTGACAAAGCCA
TGCATACATTACACTTGATCATCTCTGACGTGGCAAACAGAAAACACCTT
ATTATCATTACGCTCCCAGTTAGCTTCCCATCCCAACCTCCACTCTGCAA
AGCAAATCTACCGCTACAGTTTGAACCAAATCTTTCTGACAAAAACGTCT
TCATTGACATACTTCGGCAATATGAGCAGTTAATTGACAAACTTCAGCCC
TTCTTTCGAGTCATGGACGACTTCGATCGTAATTCTTGCGTCCTCGAACC
CGAACGCCCCGCCCGCCACGACTGTTACAGAAGAATATGCATTACAAAGC
ATTGTTCCATACGCGTAGAAATCGATCCCCGCACCCCTATCACCGGTTTC
CCTGAATGTAGGTTTCTTGGTTCTGAGAATGCGGTTGCACCATACAAACA
CCGTTTGAATCAAAACATTCACCAGTGGGACATCAGTGGAAACAAGCTTC
CCCGCGAGAATCTTGAGAAAGTGTTGGAGTTCAGCTTTCCGTCTCGAGAA
TCGCTGTTAGAGGACGCCGACGATGTGCTATTGGACGAATGTGGGATTTG
TTATTCATACAGGTTGGAGGACCACGTTCCTGATATCGCATGCGACTTGA
AGGAGTGCTCAAAACCTTATCATCGCCAATGCCTCGTGGATTGGTTACGT
GCTTTGCCAGATACACGACAGAGTTTTGATACTATCACCGGCAACTGCGT
GTACTGTGAACATCCCATCGTTGTGTCCATGAAATCCGTCTAG
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Coding sequence (CDS) from alignment at tig00000088_pilon:290457..291599-

>Gchil8563.t1 ID=Gchil8563.t1|Name=Gchil8563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1143bp|location=Sequence derived from alignment at tig00000088_pilon:290457..291599- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAATAAGCGTGCAAGCCCTCCAGCGTCTCATCACCGATTTCCCTGC
CATTGTTCCGCAAGACCCCGACCTTAACAACTTCGCCGGCTTCCTCAGCG
TGCGTCAGCGCCACTTTCGAGTCACAATAACCGCAAACTGTTCTCAATTC
TGCGGAGACAGCCATCTGTCATCTCTTCTTGCCCCACACAAACAAGTTCT
TAACAAGAGACTTAAAAACGCAGTAGATCCCCACGAATTCCTTGTTGAAG
TGCGTGACCTTATTGAGAGGGCCCTTGCTGCATCCTCCAAACACTACTCC
GATCCTCAAGTTACATTACCTCCTTCCATCTATTACGAGCGCCTTCTTGC
GGAGATAGACTCGGTTGGATGGAATAGAGTTGAGTCTATTGACAAAGCCA
TGCATACATTACACTTGATCATCTCTGACGTGGCAAACAGAAAACACCTT
ATTATCATTACGCTCCCAGTTAGCTTCCCATCCCAACCTCCACTCTGCAA
AGCAAATCTACCGCTACAGTTTGAACCAAATCTTTCTGACAAAAACGTCT
TCATTGACATACTTCGGCAATATGAGCAGTTAATTGACAAACTTCAGCCC
TTCTTTCGAGTCATGGACGACTTCGATCGTAATTCTTGCGTCCTCGAACC
CGAACGCCCCGCCCGCCACGACTGTTACAGAAGAATATGCATTACAAAGC
ATTGTTCCATACGCGTAGAAATCGATCCCCGCACCCCTATCACCGGTTTC
CCTGAATGTAGGTTTCTTGGTTCTGAGAATGCGGTTGCACCATACAAACA
CCGTTTGAATCAAAACATTCACCAGTGGGACATCAGTGGAAACAAGCTTC
CCCGCGAGAATCTTGAGAAAGTGTTGGAGTTCAGCTTTCCGTCTCGAGAA
TCGCTGTTAGAGGACGCCGACGATGTGCTATTGGACGAATGTGGGATTTG
TTATTCATACAGGTTGGAGGACCACGTTCCTGATATCGCATGCGACTTGA
AGGAGTGCTCAAAACCTTATCATCGCCAATGCCTCGTGGATTGGTTACGT
GCTTTGCCAGATACACGACAGAGTTTTGATACTATCACCGGCAACTGCGT
GTACTGTGAACATCCCATCGTTGTGTCCATGAAATCCGTCTAG
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