Gchil8621.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8621.t1
Unique NameGchil8621.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length268
Homology
BLAST of Gchil8621.t1 vs. uniprot
Match: A0A2V3J4L6_9FLOR (BHLH domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4L6_9FLOR)

HSP 1 Score: 358 bits (918), Expect = 2.480e-120
Identity = 203/271 (74.91%), Postives = 225/271 (83.03%), Query Frame = 0
Query:    1 MPKLHHSSLQLISPPQAHHRYPPAYPRKSE---SMPLPLHPDPTVHTFAPSHDTD-ERFSFARHTFFDDIAHDDAAAXXXXXXXXXGAHAQLHAPSTADSNDGTATLSGVETLHAPLAISSVPPIPNLSLPNMAHASGPPGAQMASVVINPAAMGNASIVGGASEIEDALSVDRKCAARRMRPLSRSRSQQMTESQRKQRHNEHTRASRSRIDRGLERLKSVIKKVRPHQKVTKKADVLQEAVKLLKEGFRIPATDSDEEREDAPGSTLTV 267
            M KLH SSLQL++PP   HRYPPAYPRKS+   S+PLPLHPDP V +F PSHD + ERF F RH FFD++AHDD            GAH  LHA STADSND TA LSGV++LHAPLAISSVP IPNLSLPNMAH +  P   MA+VV+ PA MGNA+IVGGASEI +ALSV+RKC  RR+RP+SRSR+QQMTESQRKQRHNEHTRASRSRIDRGLERLKSVIKKVRPHQKVTKKADVLQEAVKLLKEGFR+P T+SDEER+DAPGSTLTV
Sbjct:  139 MSKLHQSSLQLMNPPP--HRYPPAYPRKSDPPPSVPLPLHPDP-VQSFPPSHDAEPERFPFGRHPFFDEMAHDD------------GAHPPLHAHSTADSNDATAALSGVDSLHAPLAISSVPAIPNLSLPNMAHTAPAP---MAAVVMTPATMGNAAIVGGASEIVEALSVERKCVPRRLRPMSRSRAQQMTESQRKQRHNEHTRASRSRIDRGLERLKSVIKKVRPHQKVTKKADVLQEAVKLLKEGFRLPPTESDEERDDAPGSTLTV 391          
BLAST of Gchil8621.t1 vs. uniprot
Match: R7QL06_CHOCR (BHLH domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QL06_CHOCR)

HSP 1 Score: 181 bits (460), Expect = 2.770e-51
Identity = 115/243 (47.33%), Postives = 158/243 (65.02%), Query Frame = 0
Query:   31 SMPLPLHPDPTVHTFAPSHDTDER---FSFARHTFFDDIAHDDAAAXXXXXXXXXGAHAQLHAPSTADSNDGTATLSGVETLHAPLAISSVPPIPNLSLPNMAHASGPPGAQMASVVINPAAMGNASIVGGASEIEDALSVDRKCAA--RRMRPLSRSRSQQMTESQRKQRHNEHTRASRSRIDRGLERLKSVIKKVRPHQKVTKKADVLQEAVKLLKEGFRIPATDSDEEREDAPG-STLTV 267
            ++PLP+HPDP V +F P+ + +E    F+F+RH  FD+ +H++                 LH    +   D   TL+GV+++   L +  V  I NL +  MA     P   +      P  MGNA+I GGASEI + L +DRK     RR+RP++R R+QQM+ESQRKQRHNEHTRASRSRID+GLERLK  ++KV+P  KVTKKADVLQEAVK++KEG+R+P T+SD+ER++ P  S+L+V
Sbjct:  171 AVPLPMHPDP-VQSFQPNQEVNEGERGFTFSRHGLFDEFSHEEHPNPVG-----------LHPSHASQDTDQGNTLAGVDSITGHLGMPGVASISNLPIQGMAPGQAAPLHGVPGFG-GPTTMGNAAISGGASEIAETLVLDRKGNPHQRRVRPVARMRNQQMSESQRKQRHNEHTRASRSRIDKGLERLKKTLRKVKPQLKVTKKADVLQEAVKMIKEGYRLPPTESDDERDEPPQESSLSV 400          
The following BLAST results are available for this feature:
BLAST of Gchil8621.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J4L6_9FLOR2.480e-12074.91BHLH domain-containing protein n=1 Tax=Gracilariop... [more]
R7QL06_CHOCR2.770e-5147.33BHLH domain-containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 186..247
e-value: 1.3E-6
score: 30.2
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 190..244
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 247..261
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 246..267
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 173..211
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 189..211
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 192..245
score: 9.902248

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:631406..632209 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8621.t1Gchil8621.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000088_pilon 631406..632209 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8621.t1 ID=Gchil8621.t1|Name=Gchil8621.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=268bp
MPKLHHSSLQLISPPQAHHRYPPAYPRKSESMPLPLHPDPTVHTFAPSHD
TDERFSFARHTFFDDIAHDDAAAAAAAAAAAAGAHAQLHAPSTADSNDGT
ATLSGVETLHAPLAISSVPPIPNLSLPNMAHASGPPGAQMASVVINPAAM
GNASIVGGASEIEDALSVDRKCAARRMRPLSRSRSQQMTESQRKQRHNEH
TRASRSRIDRGLERLKSVIKKVRPHQKVTKKADVLQEAVKLLKEGFRIPA
TDSDEEREDAPGSTLTV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036638HLH_DNA-bd_sf
IPR011598bHLH_dom