Gchil8637.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8637.t1
Unique Name	Gchil8637.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	831

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:855233..857725 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707397.1
PFAMs	Oxysterol_BP,PH
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K20456
Evalue	2.33e-138
EggNOG OGs	KOG1737@1\|root,KOG1737@2759\|Eukaryota
Description	lipid transport
COG category	O
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8637	Gchil8637	Gracilaria chilensis NLEC103_M9 male	gene	tig00000088_pilon 855233..857725 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8637.t1.start1	Gchil8637.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000088_pilon 855233..855235 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8637.t1.CDS1	Gchil8637.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000088_pilon 855233..857725 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8637.t1.exon1	Gchil8637.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000088_pilon 855233..857725 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8637.t1.stop1	Gchil8637.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000088_pilon 857723..857725 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8637.t1	Gchil8637.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000088_pilon 855233..857725 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:855233..857725+
coding sequence from alignment at tig00000088_pilon:855233..857725+

mRNA sequence

>Gchil8637.t1 ID=Gchil8637.t1|Name=Gchil8637.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=831bp
MKRILHRRRSSTGAADAHVTLSLHKDDFHQLAATDPEVPPQKTGTLLKFT
NVIKGWKPRTFTLEYGRLVYSAADSDDGDSPDSSTRNLYEKERSKKKRSK
KLRIFKRAFSRDEKERDVKGAITLLNAVITPDDSDSCRFAIDVGHDVYHL
KAETREGRDEWVQVLKASNAYFRALIQRAVSRSRKRPSPHTSPRGKILKR
KLSQKTLDSVVACAKPSSPAQINQISDDSEESVLEDDGLREAEQSRRALM
NELERVLGVWRKELLATDSSSLDSGELLRILASTFRDLGASAHGRTITSD
HVRETTKGLIDLTSWCLNVLQTNDEMFDRRLKADLTRLMSNHLPVFPHNA
VPQVPQDIHRVLDESSEDEFVDALSRVASLRSSARLSGVFAPSYKPLLES
ALQIIDEDEVFEEKKVGEPTDGIKRISTRILSHSLKGERLSLPSLPPNRE
KPNVLTLLKDSVGKDLSRISFPVSLNEPTSFVQRLGEDIEYSELLDEGAG
EADPNRRMMFVAVMVISHYSSTLGRIAKPFNPLLGETACIIRPKKGKGIR
FIAEQVSHHPPVSACYAEGSGASWKYYNAIEVKHKFWGKSLEIIPTGLNH
VEFPETGDHYVFNQITTCVHNIVIGRMWLDNYGQMEIVNRTNGGRCVIDF
SKTGWMSDASSFGAITGTVYDASGAEKIKIGGNWTNSVYEELGGRKRNVL
WQARERPPEALSQTYNMTEWAISMNAPVHDDERKFIAPTDSRLRPDQRAL
ENGKYDEAANLKNALEESQRDRRKRMEDAGAKWEPQWFRKVVDEKTGCTD
YRYGGGYFEKHAKGDWKDCTNIFAIDASEL*

spliced messenger RNA

>Gchil8637.t1 ID=Gchil8637.t1|Name=Gchil8637.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2493bp|location=Sequence derived from alignment at tig00000088_pilon:855233..857725+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCGAATTCTACACCGCCGTCGTTCCTCCACTGGCGCCGCAGACGC
CCATGTCACCCTGTCTCTTCACAAGGATGACTTCCACCAACTTGCCGCTA
CTGATCCGGAGGTCCCACCGCAGAAAACAGGTACTCTGCTCAAGTTCACC
AACGTCATCAAGGGTTGGAAACCGCGCACCTTCACTCTTGAATATGGTCG
CCTTGTGTACTCGGCCGCCGACAGTGATGACGGCGACTCCCCTGATTCAT
CCACACGCAACCTGTACGAGAAAGAACGCTCAAAGAAAAAGCGCTCAAAG
AAGCTTCGCATCTTCAAGCGTGCATTCAGCCGTGACGAAAAAGAGCGCGA
TGTCAAGGGGGCTATCACGTTGCTAAACGCTGTCATTACCCCAGATGACT
CTGATAGCTGTCGCTTTGCAATCGACGTTGGACATGACGTGTATCATCTC
AAGGCTGAAACCAGAGAAGGGCGCGATGAGTGGGTCCAAGTTTTGAAAGC
GTCCAATGCATATTTCCGCGCTCTCATACAAAGAGCTGTTTCTCGCTCCC
GAAAGCGTCCAAGTCCTCATACAAGTCCGAGAGGAAAGATTCTAAAGCGC
AAGTTATCTCAGAAAACCCTCGATTCTGTCGTGGCATGCGCGAAGCCTTC
CAGTCCGGCGCAAATCAATCAGATCTCCGACGATAGTGAGGAATCAGTTT
TGGAAGATGATGGCCTAAGAGAGGCTGAACAGAGCCGCAGGGCCCTAATG
AACGAATTGGAACGCGTTCTTGGCGTATGGAGAAAAGAACTCTTGGCGAC
CGATTCTTCTTCGTTGGACAGTGGTGAACTGCTGAGAATCTTGGCTTCTA
CCTTCAGGGATCTTGGCGCTAGCGCTCATGGCCGAACCATCACTAGTGAT
CATGTCAGAGAAACTACAAAAGGCCTAATCGATCTAACTTCCTGGTGCCT
TAATGTTTTGCAGACAAACGATGAAATGTTCGACAGGCGTCTCAAAGCGG
ACCTTACTCGCCTCATGTCAAACCACCTTCCGGTCTTCCCCCATAACGCT
GTGCCGCAAGTACCACAAGATATCCACAGAGTTTTGGACGAATCTAGCGA
AGATGAATTTGTTGATGCTCTTTCGCGAGTTGCAAGTTTACGCAGTTCAG
CGAGACTATCCGGAGTCTTCGCGCCCTCATATAAGCCTTTACTAGAATCT
GCGCTTCAAATTATTGACGAGGATGAAGTTTTCGAAGAAAAGAAGGTCGG
TGAACCGACTGATGGAATCAAGCGCATTAgcacaaggattttgtctcatt
cactgaaaggggagagattatctcttccatCACTTCCGCCGAACAGAGAA
AAGCCAAATGTGCTCACACTGTTGAAGGATTCTGTTGGCAAGGATTTATC
ACGTATCAGTTTTCCTGTCAGTCTCAACGAACCGACTTCCTTCGTTCAGC
GGCTAGGGGAAGACATTGAGTATAGCGAATTGCTCGACGAAGGTGCGGGT
GAGGCGGACCCAAACCGTAGAATGATGTTCGTCGCGGTCATGGTAATATC
TCACTACAGTTCTACTTTGGGACGGATTGCAAAGCCTTTCAACCCTCTGC
TCGGAGAAACTGCCTGTATTATCCGCCCAAAGAAGGGAAAAGGTATTCGC
TTCATCGCTGAACAAGTGAGTCATCATCCTCCTGTATCTGCGTGTTACGC
AGAAGGATCAGGTGCATCATGGAAATATTATAACGCGATTGAAGTGAAAC
ACAAATTTTGGGGTAAGAGCCTGGAAATCATTCCAACCGGCTTGAATCAT
GTGGAGTTTCCTGAAACCGGAGACCACTATGTGTTCAATCAAATAACCAC
ATGTGTGCACAACATCGTTATTGGGAGAATGTGGCTTGATAATTACGGAC
AGATGGAAATCGTCAACAGAACGAACGGTGGACGATGTGTAATTGACTTC
AGCAAGACTGGGTGGATGAGCGATGCTAGCTCCTTTGGTGCCATAACAGG
CACTGTCTATGATGCCAGTGGGGCTGAAAAGATCAAGATTGGAGGCAACT
GGACAAACAGCGTGTACGAGGAATTGGGGGGACGGAAGCGTAACGTTTTG
TGGCAAGCACGAGAGCGACCACCAGAGGCTCTATCGCAAACTTACAACAT
GACTGAATGGGCTATTTCGATGAACGCTCCAGTACATGACGATGAAAGGA
AGTTCATCGCTCCCACAGATAGTAGATTACGGCCGGACCAGAGAGCTCTA
GAAAATGGCAAGTACGACGAAGCAGCCAACCTTAAGAACGCTCTTGAGGA
ATCTCAACGTGACCGCCGCAAACGAATGGAGGATGCGGGTGCGAAGTGGG
AGCCGCAGTGGTTCCGGAAAGTGGTTGATGAGAAAACGGGGTGTACAGAT
TACAGATACGGTGGGGGATACTTTGAGAAACACGCCAAAGGGGATTGGAA
AGACTGCACCAACATCTTCGCGATTGATGCTAGTGAGCTTTAG

protein sequence of Gchil8637.t1

>Gchil8637.t1 ID=Gchil8637.t1|Name=Gchil8637.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=831bp
MKRILHRRRSSTGAADAHVTLSLHKDDFHQLAATDPEVPPQKTGTLLKFT
NVIKGWKPRTFTLEYGRLVYSAADSDDGDSPDSSTRNLYEKERSKKKRSK
KLRIFKRAFSRDEKERDVKGAITLLNAVITPDDSDSCRFAIDVGHDVYHL
KAETREGRDEWVQVLKASNAYFRALIQRAVSRSRKRPSPHTSPRGKILKR
KLSQKTLDSVVACAKPSSPAQINQISDDSEESVLEDDGLREAEQSRRALM
NELERVLGVWRKELLATDSSSLDSGELLRILASTFRDLGASAHGRTITSD
HVRETTKGLIDLTSWCLNVLQTNDEMFDRRLKADLTRLMSNHLPVFPHNA
VPQVPQDIHRVLDESSEDEFVDALSRVASLRSSARLSGVFAPSYKPLLES
ALQIIDEDEVFEEKKVGEPTDGIKRISTRILSHSLKGERLSLPSLPPNRE
KPNVLTLLKDSVGKDLSRISFPVSLNEPTSFVQRLGEDIEYSELLDEGAG
EADPNRRMMFVAVMVISHYSSTLGRIAKPFNPLLGETACIIRPKKGKGIR
FIAEQVSHHPPVSACYAEGSGASWKYYNAIEVKHKFWGKSLEIIPTGLNH
VEFPETGDHYVFNQITTCVHNIVIGRMWLDNYGQMEIVNRTNGGRCVIDF
SKTGWMSDASSFGAITGTVYDASGAEKIKIGGNWTNSVYEELGGRKRNVL
WQARERPPEALSQTYNMTEWAISMNAPVHDDERKFIAPTDSRLRPDQRAL
ENGKYDEAANLKNALEESQRDRRKRMEDAGAKWEPQWFRKVVDEKTGCTD
YRYGGGYFEKHAKGDWKDCTNIFAIDASEL*

mRNA from alignment at tig00000088_pilon:855233..857725+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8637.t1 ID=Gchil8637.t1|Name=Gchil8637.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2493bp|location=Sequence derived from alignment at tig00000088_pilon:855233..857725+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCGAATTCTACACCGCCGTCGTTCCTCCACTGGCGCCGCAGACGC
CCATGTCACCCTGTCTCTTCACAAGGATGACTTCCACCAACTTGCCGCTA
CTGATCCGGAGGTCCCACCGCAGAAAACAGGTACTCTGCTCAAGTTCACC
AACGTCATCAAGGGTTGGAAACCGCGCACCTTCACTCTTGAATATGGTCG
CCTTGTGTACTCGGCCGCCGACAGTGATGACGGCGACTCCCCTGATTCAT
CCACACGCAACCTGTACGAGAAAGAACGCTCAAAGAAAAAGCGCTCAAAG
AAGCTTCGCATCTTCAAGCGTGCATTCAGCCGTGACGAAAAAGAGCGCGA
TGTCAAGGGGGCTATCACGTTGCTAAACGCTGTCATTACCCCAGATGACT
CTGATAGCTGTCGCTTTGCAATCGACGTTGGACATGACGTGTATCATCTC
AAGGCTGAAACCAGAGAAGGGCGCGATGAGTGGGTCCAAGTTTTGAAAGC
GTCCAATGCATATTTCCGCGCTCTCATACAAAGAGCTGTTTCTCGCTCCC
GAAAGCGTCCAAGTCCTCATACAAGTCCGAGAGGAAAGATTCTAAAGCGC
AAGTTATCTCAGAAAACCCTCGATTCTGTCGTGGCATGCGCGAAGCCTTC
CAGTCCGGCGCAAATCAATCAGATCTCCGACGATAGTGAGGAATCAGTTT
TGGAAGATGATGGCCTAAGAGAGGCTGAACAGAGCCGCAGGGCCCTAATG
AACGAATTGGAACGCGTTCTTGGCGTATGGAGAAAAGAACTCTTGGCGAC
CGATTCTTCTTCGTTGGACAGTGGTGAACTGCTGAGAATCTTGGCTTCTA
CCTTCAGGGATCTTGGCGCTAGCGCTCATGGCCGAACCATCACTAGTGAT
CATGTCAGAGAAACTACAAAAGGCCTAATCGATCTAACTTCCTGGTGCCT
TAATGTTTTGCAGACAAACGATGAAATGTTCGACAGGCGTCTCAAAGCGG
ACCTTACTCGCCTCATGTCAAACCACCTTCCGGTCTTCCCCCATAACGCT
GTGCCGCAAGTACCACAAGATATCCACAGAGTTTTGGACGAATCTAGCGA
AGATGAATTTGTTGATGCTCTTTCGCGAGTTGCAAGTTTACGCAGTTCAG
CGAGACTATCCGGAGTCTTCGCGCCCTCATATAAGCCTTTACTAGAATCT
GCGCTTCAAATTATTGACGAGGATGAAGTTTTCGAAGAAAAGAAGGTCGG
TGAACCGACTGATGGAATCAAGCGCATTAgcacaaggattttgtctcatt
cactgaaaggggagagattatctcttccatCACTTCCGCCGAACAGAGAA
AAGCCAAATGTGCTCACACTGTTGAAGGATTCTGTTGGCAAGGATTTATC
ACGTATCAGTTTTCCTGTCAGTCTCAACGAACCGACTTCCTTCGTTCAGC
GGCTAGGGGAAGACATTGAGTATAGCGAATTGCTCGACGAAGGTGCGGGT
GAGGCGGACCCAAACCGTAGAATGATGTTCGTCGCGGTCATGGTAATATC
TCACTACAGTTCTACTTTGGGACGGATTGCAAAGCCTTTCAACCCTCTGC
TCGGAGAAACTGCCTGTATTATCCGCCCAAAGAAGGGAAAAGGTATTCGC
TTCATCGCTGAACAAGTGAGTCATCATCCTCCTGTATCTGCGTGTTACGC
AGAAGGATCAGGTGCATCATGGAAATATTATAACGCGATTGAAGTGAAAC
ACAAATTTTGGGGTAAGAGCCTGGAAATCATTCCAACCGGCTTGAATCAT
GTGGAGTTTCCTGAAACCGGAGACCACTATGTGTTCAATCAAATAACCAC
ATGTGTGCACAACATCGTTATTGGGAGAATGTGGCTTGATAATTACGGAC
AGATGGAAATCGTCAACAGAACGAACGGTGGACGATGTGTAATTGACTTC
AGCAAGACTGGGTGGATGAGCGATGCTAGCTCCTTTGGTGCCATAACAGG
CACTGTCTATGATGCCAGTGGGGCTGAAAAGATCAAGATTGGAGGCAACT
GGACAAACAGCGTGTACGAGGAATTGGGGGGACGGAAGCGTAACGTTTTG
TGGCAAGCACGAGAGCGACCACCAGAGGCTCTATCGCAAACTTACAACAT
GACTGAATGGGCTATTTCGATGAACGCTCCAGTACATGACGATGAAAGGA
AGTTCATCGCTCCCACAGATAGTAGATTACGGCCGGACCAGAGAGCTCTA
GAAAATGGCAAGTACGACGAAGCAGCCAACCTTAAGAACGCTCTTGAGGA
ATCTCAACGTGACCGCCGCAAACGAATGGAGGATGCGGGTGCGAAGTGGG
AGCCGCAGTGGTTCCGGAAAGTGGTTGATGAGAAAACGGGGTGTACAGAT
TACAGATACGGTGGGGGATACTTTGAGAAACACGCCAAAGGGGATTGGAA
AGACTGCACCAACATCTTCGCGATTGATGCTAGTGAGCTTTAG

Coding sequence (CDS) from alignment at tig00000088_pilon:855233..857725+

>Gchil8637.t1 ID=Gchil8637.t1|Name=Gchil8637.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2493bp|location=Sequence derived from alignment at tig00000088_pilon:855233..857725+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCGAATTCTACACCGCCGTCGTTCCTCCACTGGCGCCGCAGACGC
CCATGTCACCCTGTCTCTTCACAAGGATGACTTCCACCAACTTGCCGCTA
CTGATCCGGAGGTCCCACCGCAGAAAACAGGTACTCTGCTCAAGTTCACC
AACGTCATCAAGGGTTGGAAACCGCGCACCTTCACTCTTGAATATGGTCG
CCTTGTGTACTCGGCCGCCGACAGTGATGACGGCGACTCCCCTGATTCAT
CCACACGCAACCTGTACGAGAAAGAACGCTCAAAGAAAAAGCGCTCAAAG
AAGCTTCGCATCTTCAAGCGTGCATTCAGCCGTGACGAAAAAGAGCGCGA
TGTCAAGGGGGCTATCACGTTGCTAAACGCTGTCATTACCCCAGATGACT
CTGATAGCTGTCGCTTTGCAATCGACGTTGGACATGACGTGTATCATCTC
AAGGCTGAAACCAGAGAAGGGCGCGATGAGTGGGTCCAAGTTTTGAAAGC
GTCCAATGCATATTTCCGCGCTCTCATACAAAGAGCTGTTTCTCGCTCCC
GAAAGCGTCCAAGTCCTCATACAAGTCCGAGAGGAAAGATTCTAAAGCGC
AAGTTATCTCAGAAAACCCTCGATTCTGTCGTGGCATGCGCGAAGCCTTC
CAGTCCGGCGCAAATCAATCAGATCTCCGACGATAGTGAGGAATCAGTTT
TGGAAGATGATGGCCTAAGAGAGGCTGAACAGAGCCGCAGGGCCCTAATG
AACGAATTGGAACGCGTTCTTGGCGTATGGAGAAAAGAACTCTTGGCGAC
CGATTCTTCTTCGTTGGACAGTGGTGAACTGCTGAGAATCTTGGCTTCTA
CCTTCAGGGATCTTGGCGCTAGCGCTCATGGCCGAACCATCACTAGTGAT
CATGTCAGAGAAACTACAAAAGGCCTAATCGATCTAACTTCCTGGTGCCT
TAATGTTTTGCAGACAAACGATGAAATGTTCGACAGGCGTCTCAAAGCGG
ACCTTACTCGCCTCATGTCAAACCACCTTCCGGTCTTCCCCCATAACGCT
GTGCCGCAAGTACCACAAGATATCCACAGAGTTTTGGACGAATCTAGCGA
AGATGAATTTGTTGATGCTCTTTCGCGAGTTGCAAGTTTACGCAGTTCAG
CGAGACTATCCGGAGTCTTCGCGCCCTCATATAAGCCTTTACTAGAATCT
GCGCTTCAAATTATTGACGAGGATGAAGTTTTCGAAGAAAAGAAGGTCGG
TGAACCGACTGATGGAATCAAGCGCATTAgcacaaggattttgtctcatt
cactgaaaggggagagattatctcttccatCACTTCCGCCGAACAGAGAA
AAGCCAAATGTGCTCACACTGTTGAAGGATTCTGTTGGCAAGGATTTATC
ACGTATCAGTTTTCCTGTCAGTCTCAACGAACCGACTTCCTTCGTTCAGC
GGCTAGGGGAAGACATTGAGTATAGCGAATTGCTCGACGAAGGTGCGGGT
GAGGCGGACCCAAACCGTAGAATGATGTTCGTCGCGGTCATGGTAATATC
TCACTACAGTTCTACTTTGGGACGGATTGCAAAGCCTTTCAACCCTCTGC
TCGGAGAAACTGCCTGTATTATCCGCCCAAAGAAGGGAAAAGGTATTCGC
TTCATCGCTGAACAAGTGAGTCATCATCCTCCTGTATCTGCGTGTTACGC
AGAAGGATCAGGTGCATCATGGAAATATTATAACGCGATTGAAGTGAAAC
ACAAATTTTGGGGTAAGAGCCTGGAAATCATTCCAACCGGCTTGAATCAT
GTGGAGTTTCCTGAAACCGGAGACCACTATGTGTTCAATCAAATAACCAC
ATGTGTGCACAACATCGTTATTGGGAGAATGTGGCTTGATAATTACGGAC
AGATGGAAATCGTCAACAGAACGAACGGTGGACGATGTGTAATTGACTTC
AGCAAGACTGGGTGGATGAGCGATGCTAGCTCCTTTGGTGCCATAACAGG
CACTGTCTATGATGCCAGTGGGGCTGAAAAGATCAAGATTGGAGGCAACT
GGACAAACAGCGTGTACGAGGAATTGGGGGGACGGAAGCGTAACGTTTTG
TGGCAAGCACGAGAGCGACCACCAGAGGCTCTATCGCAAACTTACAACAT
GACTGAATGGGCTATTTCGATGAACGCTCCAGTACATGACGATGAAAGGA
AGTTCATCGCTCCCACAGATAGTAGATTACGGCCGGACCAGAGAGCTCTA
GAAAATGGCAAGTACGACGAAGCAGCCAACCTTAAGAACGCTCTTGAGGA
ATCTCAACGTGACCGCCGCAAACGAATGGAGGATGCGGGTGCGAAGTGGG
AGCCGCAGTGGTTCCGGAAAGTGGTTGATGAGAAAACGGGGTGTACAGAT
TACAGATACGGTGGGGGATACTTTGAGAAACACGCCAAAGGGGATTGGAA
AGACTGCACCAACATCTTCGCGATTGATGCTAGTGAGCTTTAG