Gchil4020.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4020.t1
Unique NameGchil4020.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length134
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:529362..529763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3649.evm.model.supercontig_130.75
PFAMsPRK,UPRTase
Max annot lvl35493|Streptophyta
KEGG rclassRC00002,RC00017
KEGG koko:K00876
KEGG ReactionR00513,R00516,R00517,R00962,R00964,R00967,R00968,R00970,R01548,R01549,R01880,R02091,R02096,R02097,R02327,R02332,R02371,R02372,R08232
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
GOsGO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Evalue4.26e-20
EggNOG OGsCOG0572@1|root,KOG4203@2759|Eukaryota,37S3N@33090|Viridiplantae,3GGDH@35493|Streptophyta,3HSIB@3699|Brassicales
EC2.7.1.48
DescriptionBelongs to the uridine kinase family
COG categoryF
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4020Gchil4020Gracilaria chilensis NLEC103_M9 malegenetig00000081_pilon 529362..529763 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4020.t1.stop1Gchil4020.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000081_pilon 529362..529364 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4020.t1.CDS1Gchil4020.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000081_pilon 529362..529763 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4020.t1.exon1Gchil4020.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000081_pilon 529362..529763 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4020.t1.start1Gchil4020.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000081_pilon 529761..529763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4020.t1Gchil4020.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000081_pilon 529362..529763 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4020.t1 ID=Gchil4020.t1|Name=Gchil4020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=134bp
MLIGSPNGRDAIADADHAKADAAKADTADHLPVTYEYLPQGLCERYVLLL
APVLHSGRRCEAAIARLTAAPVRCREDRIVVLSLIVAPQAVRRICSRFGK
VRLVVSAIDEGLDEHGCVVPGAGDFATRYFGTD*
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spliced messenger RNA

>Gchil4020.t1 ID=Gchil4020.t1|Name=Gchil4020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=402bp|location=Sequence derived from alignment at tig00000081_pilon:529362..529763- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCATCGGTTCGCCAAACGGCCGCGACGCTATTGCCGACGCCGACCA
CGCCAAAGCCGACGCCGCCAAAGCCGACACCGCCGATCATCTGCCCGTCA
CCTACGAGTACCTGCCGCAGGGGCTGTGCGAGCGCTACGTGCTGCTGCTG
GCGCCGGTGCTACACAGCGGCCGCAGGTGTGAGGCCGCCATCGCGCGCCT
CACGGCCGCCCCCGTGCGCTGCCGCGAGGACCGCATTGTCGTACTCAGCC
TCATCGTCGCCCCGCAGGCGGTCAGACGTATTTGCTCGCGCTTCGGAAAG
GTGCGGCTGGTAGTGTCGGCCATCGACGAGGGGCTGGATGAGCATGGCTG
CGTCGTGCCGGGCGCCGGCGACTTCGCCACGCGCTACTTCGGCACCGATT
AG
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protein sequence of Gchil4020.t1

>Gchil4020.t1 ID=Gchil4020.t1|Name=Gchil4020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=134bp
MLIGSPNGRDAIADADHAKADAAKADTADHLPVTYEYLPQGLCERYVLLL
APVLHSGRRCEAAIARLTAAPVRCREDRIVVLSLIVAPQAVRRICSRFGK
VRLVVSAIDEGLDEHGCVVPGAGDFATRYFGTD*
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mRNA from alignment at tig00000081_pilon:529362..529763-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4020.t1 ID=Gchil4020.t1|Name=Gchil4020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=402bp|location=Sequence derived from alignment at tig00000081_pilon:529362..529763- (Gracilaria chilensis NLEC103_M9 male)
ATGCTCATCGGTTCGCCAAACGGCCGCGACGCTATTGCCGACGCCGACCA
CGCCAAAGCCGACGCCGCCAAAGCCGACACCGCCGATCATCTGCCCGTCA
CCTACGAGTACCTGCCGCAGGGGCTGTGCGAGCGCTACGTGCTGCTGCTG
GCGCCGGTGCTACACAGCGGCCGCAGGTGTGAGGCCGCCATCGCGCGCCT
CACGGCCGCCCCCGTGCGCTGCCGCGAGGACCGCATTGTCGTACTCAGCC
TCATCGTCGCCCCGCAGGCGGTCAGACGTATTTGCTCGCGCTTCGGAAAG
GTGCGGCTGGTAGTGTCGGCCATCGACGAGGGGCTGGATGAGCATGGCTG
CGTCGTGCCGGGCGCCGGCGACTTCGCCACGCGCTACTTCGGCACCGATT
AG
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Coding sequence (CDS) from alignment at tig00000081_pilon:529362..529763-

>Gchil4020.t1 ID=Gchil4020.t1|Name=Gchil4020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=402bp|location=Sequence derived from alignment at tig00000081_pilon:529362..529763- (Gracilaria chilensis NLEC103_M9 male)
ATGCTCATCGGTTCGCCAAACGGCCGCGACGCTATTGCCGACGCCGACCA
CGCCAAAGCCGACGCCGCCAAAGCCGACACCGCCGATCATCTGCCCGTCA
CCTACGAGTACCTGCCGCAGGGGCTGTGCGAGCGCTACGTGCTGCTGCTG
GCGCCGGTGCTACACAGCGGCCGCAGGTGTGAGGCCGCCATCGCGCGCCT
CACGGCCGCCCCCGTGCGCTGCCGCGAGGACCGCATTGTCGTACTCAGCC
TCATCGTCGCCCCGCAGGCGGTCAGACGTATTTGCTCGCGCTTCGGAAAG
GTGCGGCTGGTAGTGTCGGCCATCGACGAGGGGCTGGATGAGCATGGCTG
CGTCGTGCCGGGCGCCGGCGACTTCGCCACGCGCTACTTCGGCACCGATT
AG
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