Gchil4015.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4015.t1
Unique Name	Gchil4015.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	507

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000081_pilon	contig	tig00000081_pilon:509483..511003 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	313612.L8106_17492
PFAMs	HemolysinCabind,PAP2
Max annot lvl	1117\|Cyanobacteria
Evalue	2.95e-28
EggNOG OGs	COG2931@1\|root,COG2931@2\|Bacteria,1G3V2@1117\|Cyanobacteria,1H9MJ@1150\|Oscillatoriales
Description	Hemolysin-type calcium-binding repeat (2 copies)
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4015	Gchil4015	Gracilaria chilensis NLEC103_M9 male	gene	tig00000081_pilon 509483..511003 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4015.t1.start1	Gchil4015.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000081_pilon 509483..509485 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4015.t1.CDS1	Gchil4015.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000081_pilon 509483..511003 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4015.t1.exon1	Gchil4015.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000081_pilon 509483..511003 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4015.t1.stop1	Gchil4015.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000081_pilon 511001..511003 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4015.t1	Gchil4015.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000081_pilon 509483..511003 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000081_pilon:509483..511003+
coding sequence from alignment at tig00000081_pilon:509483..511003+

mRNA sequence

>Gchil4015.t1 ID=Gchil4015.t1|Name=Gchil4015.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=507bp
MTGAPLFAVILFGLIVTSRGECVCNGIVSDPTPLPAASNVVTKLTAVLLR
LQRGSPATPQRLAIVTGSMFEAYALSSRISLAPISDTCASLINPAVNVDD
TAAYAAFAAMRLVFRNEPEKLVLLDGYVSQLGYDTRIVNSHVGAVIARAI
AAKFMLSMPTPYQPPNAPSPAFDAACDSLQQSDKWQPQCVQSAHGEKCAP
QQVMFTPFFNATYITSNRAVFNLIADIPAPPSFGGKLSDLPFTVGTNSFA
DQYLKVIEASASLNDYGKVLAEFFEPNVGLNLFNRALDEALQRGLNNTEA
ASLFFALGAAMRDALVTSVTIKLTYNTVRPVTVIQCAYSKQNVSAWSGPY
GGVRALERNEPQEQLWRPYLQTPPFPGYISGHSAVAAAGTRVLGRFFKGE
RPEGANCHVTKAGMSRIEGRIEKGSDGYVGGVTDVANSGGGSVGFSPARD
ITICWRSWEEFSNLVATSRLVGGIHIGVDNQVGKDVGRKIGDGAYEFVFG
GVSLKE*

spliced messenger RNA

>Gchil4015.t1 ID=Gchil4015.t1|Name=Gchil4015.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at tig00000081_pilon:509483..511003+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGGAGCACCGCTTTTCGCAGTAATCCTTTTCGGGCTCATCGTCAC
CTCGCGTGGCGAGTGTGTATGCAATGGAATTGTATCCGATCCTACCCCGC
TACCAGCCGCCTCCAACGTCGTCACCAAGCTAACCGCCGTGTTGCTCCGT
TTGCAACGCGGATCGCCCGCTACACCGCAACGTCTAGCCATTGTCACTGG
TTCTATGTTCGAGGCCTACGCGCTATCTTCACGAATTTCTCTGGCACCAA
TCTCAGATACCTGCGCCTCATTGATCAATCCAGCCGTTAATGTAGACGAC
ACAGCAGCTTACGCCGCCTTCGCTGCAATGCGATTGGTGTTTCGCAATGA
ACCTGAAAAACTTGTGTTGCTCGACGGGTATGTTTCACAGCTTGGATATG
ACACGCGCATTGTGAACTCACATGTTGGTGCTGTGATTGCAAGGGCGATT
GCTGCAAAGTTCATGCTTTCCATGCCCACGCCTTACCAACCGCCAAACGC
GCCTTCCCCCGCGTTCGACGCAGCTTGCGATTCCCTGCAACAGTCGGATA
AATGGCAGCCGCAGTGCGTGCAATCAGCGCACGGTGAAAAATGTGCTCCG
CAACAAGTGATGTTCACGCCGTTCTTCAACGCTACGTACATCACGAGCAA
CCGTGCAGTGTTTAATTTGATTGCTGACATTCCGGCCCCTCCCTCGTTTG
GCGGCAAGCTGTCAGACCTGCCGTTCACGGTTGGCACGAATTCTTTCGCA
GACCAGTACCTGAAAGTAATTGAGGCGAGCGCGTCGCTCAATGATTACGG
CAAGGTGCTTGCAGAATTCTTCGAGCCGAATGTTGGCTTAAATTTGTTCA
ATCGCGCTTTGGACGAGGCTTTGCAACGCGGGTTGAACAACACCGAAGCA
GCTTCACTATTCTTTGCGCTTGGAGCTGCAATGCGCGATGCGCTCGTGAC
GTCGGTGACGATCAAATTAACATACAACACGGTGCGACCGGTGACGGTGA
TTCAATGCGCGTACTCCAAGCAGAATGTGAGCGCGTGGAGTGGACCGTAT
GGCGGCGTACGCGCCCTTGAGCGAAACGAGCCGCAGGAGCAGTTGTGGCG
GCCGTATTTGCAAACGCCGCCCTTCCCCGGTTACATATCTGGGCACAGCG
CGGTGGCTGCGGCCGGAACGCGCGTTCTGGGGCGGTTCTTCAAGGGCGAA
AGGCCTGAGGGAGCAAACTGCCACGTGACAAAGGCAGGGATGAGCAGGAT
TGAAGGGCGCATTGAGAAGGGCTCCGACGGGTACGTGGGCGGAGTGACTG
ATGTTGCGAATAGCGGCGGTGGTTCAGTGGGTTTCTCGCCGGCGCGGGAT
ATTACGATATGCTGGAGGTCGTGGGAAGAGTTTTCTAATCTGGTGGCGAC
GTCCAGACTGGTTGGGGGAATTCACATTGGTGTGGATAACCAAGTTGGGA
AGGACGTGGGGCGCAAGATTGGAGATGGGGCGTACGAGTTTGTGTTTGGT
GGTGTGTCTCTAAAAGAGTAA

protein sequence of Gchil4015.t1

>Gchil4015.t1 ID=Gchil4015.t1|Name=Gchil4015.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=507bp
MTGAPLFAVILFGLIVTSRGECVCNGIVSDPTPLPAASNVVTKLTAVLLR
LQRGSPATPQRLAIVTGSMFEAYALSSRISLAPISDTCASLINPAVNVDD
TAAYAAFAAMRLVFRNEPEKLVLLDGYVSQLGYDTRIVNSHVGAVIARAI
AAKFMLSMPTPYQPPNAPSPAFDAACDSLQQSDKWQPQCVQSAHGEKCAP
QQVMFTPFFNATYITSNRAVFNLIADIPAPPSFGGKLSDLPFTVGTNSFA
DQYLKVIEASASLNDYGKVLAEFFEPNVGLNLFNRALDEALQRGLNNTEA
ASLFFALGAAMRDALVTSVTIKLTYNTVRPVTVIQCAYSKQNVSAWSGPY
GGVRALERNEPQEQLWRPYLQTPPFPGYISGHSAVAAAGTRVLGRFFKGE
RPEGANCHVTKAGMSRIEGRIEKGSDGYVGGVTDVANSGGGSVGFSPARD
ITICWRSWEEFSNLVATSRLVGGIHIGVDNQVGKDVGRKIGDGAYEFVFG
GVSLKE*

mRNA from alignment at tig00000081_pilon:509483..511003+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4015.t1 ID=Gchil4015.t1|Name=Gchil4015.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at tig00000081_pilon:509483..511003+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGGAGCACCGCTTTTCGCAGTAATCCTTTTCGGGCTCATCGTCAC
CTCGCGTGGCGAGTGTGTATGCAATGGAATTGTATCCGATCCTACCCCGC
TACCAGCCGCCTCCAACGTCGTCACCAAGCTAACCGCCGTGTTGCTCCGT
TTGCAACGCGGATCGCCCGCTACACCGCAACGTCTAGCCATTGTCACTGG
TTCTATGTTCGAGGCCTACGCGCTATCTTCACGAATTTCTCTGGCACCAA
TCTCAGATACCTGCGCCTCATTGATCAATCCAGCCGTTAATGTAGACGAC
ACAGCAGCTTACGCCGCCTTCGCTGCAATGCGATTGGTGTTTCGCAATGA
ACCTGAAAAACTTGTGTTGCTCGACGGGTATGTTTCACAGCTTGGATATG
ACACGCGCATTGTGAACTCACATGTTGGTGCTGTGATTGCAAGGGCGATT
GCTGCAAAGTTCATGCTTTCCATGCCCACGCCTTACCAACCGCCAAACGC
GCCTTCCCCCGCGTTCGACGCAGCTTGCGATTCCCTGCAACAGTCGGATA
AATGGCAGCCGCAGTGCGTGCAATCAGCGCACGGTGAAAAATGTGCTCCG
CAACAAGTGATGTTCACGCCGTTCTTCAACGCTACGTACATCACGAGCAA
CCGTGCAGTGTTTAATTTGATTGCTGACATTCCGGCCCCTCCCTCGTTTG
GCGGCAAGCTGTCAGACCTGCCGTTCACGGTTGGCACGAATTCTTTCGCA
GACCAGTACCTGAAAGTAATTGAGGCGAGCGCGTCGCTCAATGATTACGG
CAAGGTGCTTGCAGAATTCTTCGAGCCGAATGTTGGCTTAAATTTGTTCA
ATCGCGCTTTGGACGAGGCTTTGCAACGCGGGTTGAACAACACCGAAGCA
GCTTCACTATTCTTTGCGCTTGGAGCTGCAATGCGCGATGCGCTCGTGAC
GTCGGTGACGATCAAATTAACATACAACACGGTGCGACCGGTGACGGTGA
TTCAATGCGCGTACTCCAAGCAGAATGTGAGCGCGTGGAGTGGACCGTAT
GGCGGCGTACGCGCCCTTGAGCGAAACGAGCCGCAGGAGCAGTTGTGGCG
GCCGTATTTGCAAACGCCGCCCTTCCCCGGTTACATATCTGGGCACAGCG
CGGTGGCTGCGGCCGGAACGCGCGTTCTGGGGCGGTTCTTCAAGGGCGAA
AGGCCTGAGGGAGCAAACTGCCACGTGACAAAGGCAGGGATGAGCAGGAT
TGAAGGGCGCATTGAGAAGGGCTCCGACGGGTACGTGGGCGGAGTGACTG
ATGTTGCGAATAGCGGCGGTGGTTCAGTGGGTTTCTCGCCGGCGCGGGAT
ATTACGATATGCTGGAGGTCGTGGGAAGAGTTTTCTAATCTGGTGGCGAC
GTCCAGACTGGTTGGGGGAATTCACATTGGTGTGGATAACCAAGTTGGGA
AGGACGTGGGGCGCAAGATTGGAGATGGGGCGTACGAGTTTGTGTTTGGT
GGTGTGTCTCTAAAAGAGTAA

Coding sequence (CDS) from alignment at tig00000081_pilon:509483..511003+

>Gchil4015.t1 ID=Gchil4015.t1|Name=Gchil4015.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1521bp|location=Sequence derived from alignment at tig00000081_pilon:509483..511003+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGGAGCACCGCTTTTCGCAGTAATCCTTTTCGGGCTCATCGTCAC
CTCGCGTGGCGAGTGTGTATGCAATGGAATTGTATCCGATCCTACCCCGC
TACCAGCCGCCTCCAACGTCGTCACCAAGCTAACCGCCGTGTTGCTCCGT
TTGCAACGCGGATCGCCCGCTACACCGCAACGTCTAGCCATTGTCACTGG
TTCTATGTTCGAGGCCTACGCGCTATCTTCACGAATTTCTCTGGCACCAA
TCTCAGATACCTGCGCCTCATTGATCAATCCAGCCGTTAATGTAGACGAC
ACAGCAGCTTACGCCGCCTTCGCTGCAATGCGATTGGTGTTTCGCAATGA
ACCTGAAAAACTTGTGTTGCTCGACGGGTATGTTTCACAGCTTGGATATG
ACACGCGCATTGTGAACTCACATGTTGGTGCTGTGATTGCAAGGGCGATT
GCTGCAAAGTTCATGCTTTCCATGCCCACGCCTTACCAACCGCCAAACGC
GCCTTCCCCCGCGTTCGACGCAGCTTGCGATTCCCTGCAACAGTCGGATA
AATGGCAGCCGCAGTGCGTGCAATCAGCGCACGGTGAAAAATGTGCTCCG
CAACAAGTGATGTTCACGCCGTTCTTCAACGCTACGTACATCACGAGCAA
CCGTGCAGTGTTTAATTTGATTGCTGACATTCCGGCCCCTCCCTCGTTTG
GCGGCAAGCTGTCAGACCTGCCGTTCACGGTTGGCACGAATTCTTTCGCA
GACCAGTACCTGAAAGTAATTGAGGCGAGCGCGTCGCTCAATGATTACGG
CAAGGTGCTTGCAGAATTCTTCGAGCCGAATGTTGGCTTAAATTTGTTCA
ATCGCGCTTTGGACGAGGCTTTGCAACGCGGGTTGAACAACACCGAAGCA
GCTTCACTATTCTTTGCGCTTGGAGCTGCAATGCGCGATGCGCTCGTGAC
GTCGGTGACGATCAAATTAACATACAACACGGTGCGACCGGTGACGGTGA
TTCAATGCGCGTACTCCAAGCAGAATGTGAGCGCGTGGAGTGGACCGTAT
GGCGGCGTACGCGCCCTTGAGCGAAACGAGCCGCAGGAGCAGTTGTGGCG
GCCGTATTTGCAAACGCCGCCCTTCCCCGGTTACATATCTGGGCACAGCG
CGGTGGCTGCGGCCGGAACGCGCGTTCTGGGGCGGTTCTTCAAGGGCGAA
AGGCCTGAGGGAGCAAACTGCCACGTGACAAAGGCAGGGATGAGCAGGAT
TGAAGGGCGCATTGAGAAGGGCTCCGACGGGTACGTGGGCGGAGTGACTG
ATGTTGCGAATAGCGGCGGTGGTTCAGTGGGTTTCTCGCCGGCGCGGGAT
ATTACGATATGCTGGAGGTCGTGGGAAGAGTTTTCTAATCTGGTGGCGAC
GTCCAGACTGGTTGGGGGAATTCACATTGGTGTGGATAACCAAGTTGGGA
AGGACGTGGGGCGCAAGATTGGAGATGGGGCGTACGAGTTTGTGTTTGGT
GGTGTGTCTCTAAAAGAGTAA