Gchil4019.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4019.t1
Unique NameGchil4019.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length505
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:527564..529078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4019Gchil4019Gracilaria chilensis NLEC103_M9 malegenetig00000081_pilon 527564..529078 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4019.t1.stop1Gchil4019.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000081_pilon 527564..527566 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4019.t1.CDS1Gchil4019.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000081_pilon 527564..529078 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4019.t1.exon1Gchil4019.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000081_pilon 527564..529078 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4019.t1.start1Gchil4019.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000081_pilon 529076..529078 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4019.t1Gchil4019.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000081_pilon 527564..529078 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4019.t1 ID=Gchil4019.t1|Name=Gchil4019.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=505bp
MVPTVLNAHTDAAQATARLLLHQHLLPFCDVDVVAGRKHFPAHRAVLAVH
SLEFRSLFSHPPLLASHPAAATDADADANADADAEADAEADAEADAGADV
HAVAASSVIAAPPDQSAARTKPAHRSRVQVAVQHADEHALRLGWQLVYSY
MYGETVTLDTDSVLAALPICRRYRFDELAVFLDAFLSEGAVSERNCTRVY
AAAALHPSSSQPARARDSDAQLVLAEAWRVMKTRFDHVLDWGSLPYHALV
KLLKLNDLNVQSEASVFDAVQQWVFANVNTVDDAQVASVVKLVRFPTMTQ
QQLELAAASQLLAKFTVCRKYVSRGLAAKSDERRGLIRSVVMESSPVYRR
RRTDALTFSDRVAGWHRLENHVNTSSRYFAGCLWNLIIEKDLEWVGVFLG
CQSETEEKEMDVELDFSVFMVRHTGAHPELVTKQVKGACFGRSGQRIGFS
KMIKRQDIEKEGSRLLLRDTLFVGASIRLRCSQLDVVGITPDGDDTAESE
SSIM*
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spliced messenger RNA

>Gchil4019.t1 ID=Gchil4019.t1|Name=Gchil4019.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1515bp|location=Sequence derived from alignment at tig00000081_pilon:527564..529078- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCCCACCGTGCTCAACGCGCACACCGACGCGGCGCAGGCCACCGC
GCGGCTGCTGCTGCACCAGCATCTGCTCCCGTTCTGCGATGTAGACGTCG
TCGCCGGCCGCAAGCACTTCCCCGCCCATCGCGCCGTTCTTGCCGTGCAT
TCGCTTGAGTTTCGAAGCCTGTTTTCGCACCCCCCATTGCTCGCATCGCA
CCCCGCCGCCGCTACTGATGCGGACGCTGACGCGAACGCGGACGCGGACG
CGGAAGCGGACGCGGAAGCGGACGCGGAAGCGGACGCGGGCGCGGACGTA
CACGCAGTCGCCGCCTCCTCCGTCATCGCTGCGCCCCCCGATCAATCCGC
CGCGCGCACCAAGCCCGCCCACAGGTCCCGCGTCCAGGTCGCCGTGCAGC
ACGCCGACGAACACGCGCTGCGCCTGGGCTGGCAGCTCGTTTACTCCTAC
ATGTACGGTGAGACTGTCACGCTCGACACCGATTCCGTTCTGGCCGCGCT
CCCCATTTGCCGTCGCTACCGCTTCGATGAGCTGGCCGTCTTTCTCGACG
CCTTCCTGAGTGAAGGCGCCGTCTCCGAACGCAATTGCACGCGCGTTTAC
GCTGCCGCAGCGCTGCATCCCTCGTCCTCGCAGCCGGCGCGCGCGCGCGA
CTCAGACGCACAGCTTGTGCTGGCCGAGGCTTGGCGCGTCATGAAGACCC
GCTTTGATCACGTGCTTGACTGGGGCTCGCTTCCGTATCACGCGCTCGTA
AAGCTGCTAAAGCTCAATGACCTCAACGTGCAAAGTGAGGCCAGTGTTTT
CGACGCTGTGCAACAGTGGGTATTTGCCAACGTCAACACTGTTGATGATG
CCCAGGTTGCCTCCGTTGTCAAGCTCGTGCGCTTTCCCACCATGACACAG
CAGCAGTTGGAGCTTGCCGCCGCTTCGCAACTGCTTGCCAAGTTCACCGT
GTGTAGAAAGTATGTCAGTCGCGGGCTAGCGGCCAAGTCGGATGAGCGAC
GCGGACTCATCCGCTCCGTTGTCATGGAGAGCAGTCCGGTGTATCGCAGA
CGCCGCACGGATGCCCTTACCTTTTCGGATAGGGTTGCCGGCTGGCATCG
TCTCGAGAACCATGTCAACACCAGCTCGCGCTACTTTGCGGGCTGTCTAT
GGAACTTAATCATTGAAAAGGACCTTGAATGGGTCGGCGTCTTCTTGGGC
TGTCAGTCTGAGACTGAAGAAAAGGAAATGGATGTGGAGCTCGACTTTTC
CGTCTTCATGGTCAGACACACCGGCGCTCATCCCGAGCTTGTTACCAAAC
AGGTCAAAGGTGCGTGTTTCGGCAGAAGTGGTCAGAGGATTGGCTTCAGC
AAGATGATAAAGAGGCAAGATATCGAGAAGGAGGGTAGTCGATTACTGCT
CCGGGATACACTCTTCGTCGGAGCAAGTATCCGGCTTCGATGTTCACAGC
TTGACGTCGTAGGTATCACGCCAGATGGCGATGATACCGCCGAGTCTGAA
TCTTCCATTATGTGA
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protein sequence of Gchil4019.t1

>Gchil4019.t1 ID=Gchil4019.t1|Name=Gchil4019.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=505bp
MVPTVLNAHTDAAQATARLLLHQHLLPFCDVDVVAGRKHFPAHRAVLAVH
SLEFRSLFSHPPLLASHPAAATDADADANADADAEADAEADAEADAGADV
HAVAASSVIAAPPDQSAARTKPAHRSRVQVAVQHADEHALRLGWQLVYSY
MYGETVTLDTDSVLAALPICRRYRFDELAVFLDAFLSEGAVSERNCTRVY
AAAALHPSSSQPARARDSDAQLVLAEAWRVMKTRFDHVLDWGSLPYHALV
KLLKLNDLNVQSEASVFDAVQQWVFANVNTVDDAQVASVVKLVRFPTMTQ
QQLELAAASQLLAKFTVCRKYVSRGLAAKSDERRGLIRSVVMESSPVYRR
RRTDALTFSDRVAGWHRLENHVNTSSRYFAGCLWNLIIEKDLEWVGVFLG
CQSETEEKEMDVELDFSVFMVRHTGAHPELVTKQVKGACFGRSGQRIGFS
KMIKRQDIEKEGSRLLLRDTLFVGASIRLRCSQLDVVGITPDGDDTAESE
SSIM*
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mRNA from alignment at tig00000081_pilon:527564..529078-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4019.t1 ID=Gchil4019.t1|Name=Gchil4019.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1515bp|location=Sequence derived from alignment at tig00000081_pilon:527564..529078- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCCCACCGTGCTCAACGCGCACACCGACGCGGCGCAGGCCACCGC
GCGGCTGCTGCTGCACCAGCATCTGCTCCCGTTCTGCGATGTAGACGTCG
TCGCCGGCCGCAAGCACTTCCCCGCCCATCGCGCCGTTCTTGCCGTGCAT
TCGCTTGAGTTTCGAAGCCTGTTTTCGCACCCCCCATTGCTCGCATCGCA
CCCCGCCGCCGCTACTGATGCGGACGCTGACGCGAACGCGGACGCGGACG
CGGAAGCGGACGCGGAAGCGGACGCGGAAGCGGACGCGGGCGCGGACGTA
CACGCAGTCGCCGCCTCCTCCGTCATCGCTGCGCCCCCCGATCAATCCGC
CGCGCGCACCAAGCCCGCCCACAGGTCCCGCGTCCAGGTCGCCGTGCAGC
ACGCCGACGAACACGCGCTGCGCCTGGGCTGGCAGCTCGTTTACTCCTAC
ATGTACGGTGAGACTGTCACGCTCGACACCGATTCCGTTCTGGCCGCGCT
CCCCATTTGCCGTCGCTACCGCTTCGATGAGCTGGCCGTCTTTCTCGACG
CCTTCCTGAGTGAAGGCGCCGTCTCCGAACGCAATTGCACGCGCGTTTAC
GCTGCCGCAGCGCTGCATCCCTCGTCCTCGCAGCCGGCGCGCGCGCGCGA
CTCAGACGCACAGCTTGTGCTGGCCGAGGCTTGGCGCGTCATGAAGACCC
GCTTTGATCACGTGCTTGACTGGGGCTCGCTTCCGTATCACGCGCTCGTA
AAGCTGCTAAAGCTCAATGACCTCAACGTGCAAAGTGAGGCCAGTGTTTT
CGACGCTGTGCAACAGTGGGTATTTGCCAACGTCAACACTGTTGATGATG
CCCAGGTTGCCTCCGTTGTCAAGCTCGTGCGCTTTCCCACCATGACACAG
CAGCAGTTGGAGCTTGCCGCCGCTTCGCAACTGCTTGCCAAGTTCACCGT
GTGTAGAAAGTATGTCAGTCGCGGGCTAGCGGCCAAGTCGGATGAGCGAC
GCGGACTCATCCGCTCCGTTGTCATGGAGAGCAGTCCGGTGTATCGCAGA
CGCCGCACGGATGCCCTTACCTTTTCGGATAGGGTTGCCGGCTGGCATCG
TCTCGAGAACCATGTCAACACCAGCTCGCGCTACTTTGCGGGCTGTCTAT
GGAACTTAATCATTGAAAAGGACCTTGAATGGGTCGGCGTCTTCTTGGGC
TGTCAGTCTGAGACTGAAGAAAAGGAAATGGATGTGGAGCTCGACTTTTC
CGTCTTCATGGTCAGACACACCGGCGCTCATCCCGAGCTTGTTACCAAAC
AGGTCAAAGGTGCGTGTTTCGGCAGAAGTGGTCAGAGGATTGGCTTCAGC
AAGATGATAAAGAGGCAAGATATCGAGAAGGAGGGTAGTCGATTACTGCT
CCGGGATACACTCTTCGTCGGAGCAAGTATCCGGCTTCGATGTTCACAGC
TTGACGTCGTAGGTATCACGCCAGATGGCGATGATACCGCCGAGTCTGAA
TCTTCCATTATGTGA
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Coding sequence (CDS) from alignment at tig00000081_pilon:527564..529078-

>Gchil4019.t1 ID=Gchil4019.t1|Name=Gchil4019.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1515bp|location=Sequence derived from alignment at tig00000081_pilon:527564..529078- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCCCACCGTGCTCAACGCGCACACCGACGCGGCGCAGGCCACCGC
GCGGCTGCTGCTGCACCAGCATCTGCTCCCGTTCTGCGATGTAGACGTCG
TCGCCGGCCGCAAGCACTTCCCCGCCCATCGCGCCGTTCTTGCCGTGCAT
TCGCTTGAGTTTCGAAGCCTGTTTTCGCACCCCCCATTGCTCGCATCGCA
CCCCGCCGCCGCTACTGATGCGGACGCTGACGCGAACGCGGACGCGGACG
CGGAAGCGGACGCGGAAGCGGACGCGGAAGCGGACGCGGGCGCGGACGTA
CACGCAGTCGCCGCCTCCTCCGTCATCGCTGCGCCCCCCGATCAATCCGC
CGCGCGCACCAAGCCCGCCCACAGGTCCCGCGTCCAGGTCGCCGTGCAGC
ACGCCGACGAACACGCGCTGCGCCTGGGCTGGCAGCTCGTTTACTCCTAC
ATGTACGGTGAGACTGTCACGCTCGACACCGATTCCGTTCTGGCCGCGCT
CCCCATTTGCCGTCGCTACCGCTTCGATGAGCTGGCCGTCTTTCTCGACG
CCTTCCTGAGTGAAGGCGCCGTCTCCGAACGCAATTGCACGCGCGTTTAC
GCTGCCGCAGCGCTGCATCCCTCGTCCTCGCAGCCGGCGCGCGCGCGCGA
CTCAGACGCACAGCTTGTGCTGGCCGAGGCTTGGCGCGTCATGAAGACCC
GCTTTGATCACGTGCTTGACTGGGGCTCGCTTCCGTATCACGCGCTCGTA
AAGCTGCTAAAGCTCAATGACCTCAACGTGCAAAGTGAGGCCAGTGTTTT
CGACGCTGTGCAACAGTGGGTATTTGCCAACGTCAACACTGTTGATGATG
CCCAGGTTGCCTCCGTTGTCAAGCTCGTGCGCTTTCCCACCATGACACAG
CAGCAGTTGGAGCTTGCCGCCGCTTCGCAACTGCTTGCCAAGTTCACCGT
GTGTAGAAAGTATGTCAGTCGCGGGCTAGCGGCCAAGTCGGATGAGCGAC
GCGGACTCATCCGCTCCGTTGTCATGGAGAGCAGTCCGGTGTATCGCAGA
CGCCGCACGGATGCCCTTACCTTTTCGGATAGGGTTGCCGGCTGGCATCG
TCTCGAGAACCATGTCAACACCAGCTCGCGCTACTTTGCGGGCTGTCTAT
GGAACTTAATCATTGAAAAGGACCTTGAATGGGTCGGCGTCTTCTTGGGC
TGTCAGTCTGAGACTGAAGAAAAGGAAATGGATGTGGAGCTCGACTTTTC
CGTCTTCATGGTCAGACACACCGGCGCTCATCCCGAGCTTGTTACCAAAC
AGGTCAAAGGTGCGTGTTTCGGCAGAAGTGGTCAGAGGATTGGCTTCAGC
AAGATGATAAAGAGGCAAGATATCGAGAAGGAGGGTAGTCGATTACTGCT
CCGGGATACACTCTTCGTCGGAGCAAGTATCCGGCTTCGATGTTCACAGC
TTGACGTCGTAGGTATCACGCCAGATGGCGATGATACCGCCGAGTCTGAA
TCTTCCATTATGTGA
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