Gchil10252.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10252.t1
Unique NameGchil10252.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length199
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000065_piloncontigtig00000065_pilon:69354..69950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121033.AUCF01000003_gene3348
PFAMsDUF938
Max annot lvl204441|Rhodospirillales
Evalue2.92e-62
EggNOG OGsCOG2813@1|root,COG2813@2|Bacteria,1RHAE@1224|Proteobacteria,2U5V5@28211|Alphaproteobacteria,2JYYC@204441|Rhodospirillales
DescriptionProtein of unknown function (DUF938)
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10252Gchil10252Gracilaria chilensis NLEC103_M9 malegenetig00000065_pilon 69354..69950 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10252.t1.start1Gchil10252.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000065_pilon 69354..69356 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10252.t1.CDS1Gchil10252.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000065_pilon 69354..69950 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10252.t1.exon1Gchil10252.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000065_pilon 69354..69950 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10252.t1.stop1Gchil10252.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000065_pilon 69948..69950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10252.t1Gchil10252.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000065_pilon 69354..69950 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10252.t1 ID=Gchil10252.t1|Name=Gchil10252.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=199bp
MKLYSTAAERNKAPILKVLQRLLPQSGRLLEVASGSGQHVETFAAAMPQW
QFSPTDPDTESIASINERVTEAKLTNVAKAIALDASTWPWPVVQADAIFA
CNMVHISPWAATVGLLTGAGKVLPVGGILVLYGPYVIDGKTADSNMMFSQ
SLKVQNAEWGVRELKDVEKVANEADLALTEIVPMPANNYCVVFRKGNS*
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spliced messenger RNA

>Gchil10252.t1 ID=Gchil10252.t1|Name=Gchil10252.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00000065_pilon:69354..69950+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTATACTCCACAGCTGCCGAGCGTAACAAAGCCCCAATTTTGAA
AGTTCTACAACGTTTGCTGCCTCAATCTGGTCGTTTACTCGAAGTTGCAA
GCGGCAGTGGTCAACATGTGGAAACGTTCGCAGCAGCAATGCCGCAATGG
CAGTTTAGCCCAACTGATCCGGATACCGAATCTATCGCAAGTATCAATGA
ACGAGTGACTGAAGCAAAACTCACTAATGTGGCCAAAGCCATTGCACTGG
ATGCCTCGACCTGGCCGTGGCCCGTCGTTCAGGCAGATGCAATCTTTGCA
TGTAATATGGTACATATCTCTCCCTGGGCTGCGACAGTTGGCTTACTCAC
AGGCGCTGGGAAAGTTCTCCCTGTTGGAGGAATACTTGTTTTATATGGAC
CATATGTGATTGACGGAAAAACTGCAGATAGCAACATGATGTTTAGTCAG
AGCTTGAAGGTACAAAATGCAGAGTGGGGTGTGAGAGAGCTTAAGGATGT
TGAGAAGGTTGCGAACGAGGCCGATTTGGCACTCACGGAGATTGTGCCAA
TGCCAGCCAACAATTATTGTGTGGTGTTTCGAAAGGGCAATAGCTGA
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protein sequence of Gchil10252.t1

>Gchil10252.t1 ID=Gchil10252.t1|Name=Gchil10252.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=199bp
MKLYSTAAERNKAPILKVLQRLLPQSGRLLEVASGSGQHVETFAAAMPQW
QFSPTDPDTESIASINERVTEAKLTNVAKAIALDASTWPWPVVQADAIFA
CNMVHISPWAATVGLLTGAGKVLPVGGILVLYGPYVIDGKTADSNMMFSQ
SLKVQNAEWGVRELKDVEKVANEADLALTEIVPMPANNYCVVFRKGNS*
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mRNA from alignment at tig00000065_pilon:69354..69950+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10252.t1 ID=Gchil10252.t1|Name=Gchil10252.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00000065_pilon:69354..69950+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGTTATACTCCACAGCTGCCGAGCGTAACAAAGCCCCAATTTTGAA
AGTTCTACAACGTTTGCTGCCTCAATCTGGTCGTTTACTCGAAGTTGCAA
GCGGCAGTGGTCAACATGTGGAAACGTTCGCAGCAGCAATGCCGCAATGG
CAGTTTAGCCCAACTGATCCGGATACCGAATCTATCGCAAGTATCAATGA
ACGAGTGACTGAAGCAAAACTCACTAATGTGGCCAAAGCCATTGCACTGG
ATGCCTCGACCTGGCCGTGGCCCGTCGTTCAGGCAGATGCAATCTTTGCA
TGTAATATGGTACATATCTCTCCCTGGGCTGCGACAGTTGGCTTACTCAC
AGGCGCTGGGAAAGTTCTCCCTGTTGGAGGAATACTTGTTTTATATGGAC
CATATGTGATTGACGGAAAAACTGCAGATAGCAACATGATGTTTAGTCAG
AGCTTGAAGGTACAAAATGCAGAGTGGGGTGTGAGAGAGCTTAAGGATGT
TGAGAAGGTTGCGAACGAGGCCGATTTGGCACTCACGGAGATTGTGCCAA
TGCCAGCCAACAATTATTGTGTGGTGTTTCGAAAGGGCAATAGCTGA
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Coding sequence (CDS) from alignment at tig00000065_pilon:69354..69950+

>Gchil10252.t1 ID=Gchil10252.t1|Name=Gchil10252.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=597bp|location=Sequence derived from alignment at tig00000065_pilon:69354..69950+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGTTATACTCCACAGCTGCCGAGCGTAACAAAGCCCCAATTTTGAA
AGTTCTACAACGTTTGCTGCCTCAATCTGGTCGTTTACTCGAAGTTGCAA
GCGGCAGTGGTCAACATGTGGAAACGTTCGCAGCAGCAATGCCGCAATGG
CAGTTTAGCCCAACTGATCCGGATACCGAATCTATCGCAAGTATCAATGA
ACGAGTGACTGAAGCAAAACTCACTAATGTGGCCAAAGCCATTGCACTGG
ATGCCTCGACCTGGCCGTGGCCCGTCGTTCAGGCAGATGCAATCTTTGCA
TGTAATATGGTACATATCTCTCCCTGGGCTGCGACAGTTGGCTTACTCAC
AGGCGCTGGGAAAGTTCTCCCTGTTGGAGGAATACTTGTTTTATATGGAC
CATATGTGATTGACGGAAAAACTGCAGATAGCAACATGATGTTTAGTCAG
AGCTTGAAGGTACAAAATGCAGAGTGGGGTGTGAGAGAGCTTAAGGATGT
TGAGAAGGTTGCGAACGAGGCCGATTTGGCACTCACGGAGATTGTGCCAA
TGCCAGCCAACAATTATTGTGTGGTGTTTCGAAAGGGCAATAGCTGA
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