Gchil7331.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7331.t1
Unique NameGchil7331.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length678
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:369917..371950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FH29
PFAMsFAD_binding_3,NAD_binding_8
Max annot lvl2759|Eukaryota
Evalue8.05e-60
EggNOG OGsCOG0654@1|root,KOG2614@2759|Eukaryota
DescriptionFAD binding
COG categoryCH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7331Gchil7331Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 369917..371950 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7331.t1.stop1Gchil7331.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 369917..369919 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7331.t1.CDS1Gchil7331.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 369917..371950 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7331.t1.exon1Gchil7331.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 369917..371950 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7331.t1.start1Gchil7331.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 371948..371950 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7331.t1Gchil7331.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 369917..371950 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7331.t1 ID=Gchil7331.t1|Name=Gchil7331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=678bp
MSLLATGYSAPPLRLNHRGWGEVTAAVVTSVLLPVLSVRTQGGSDDVSRA
LLAQLVVPVTLAKVALFVALNVADRRADFAGRKHTLAVALGDAAAARLYA
TLMAGAYCAAMVVALTMDATEKDGGGGVWRAARLVVMMGMSGRGAGFVAR
SLRERPYRVRAAVLRAAVALPSRMVAAVVAETLMRQHVRDAGRLALVALV
LLPMVVLASKKEEKQGDNEEEQQEEGKEELDVDVVVVGGGVGGLTTAAVL
QRVGRSVRVVERRALRDAGDGADVALWPGAVALLRRLRVSRAFLDEQCFA
LHAVRMMDGAGARCLNGVDMRRVAAAADKDDKDDARFVLVARTALMGALR
GLVPPHVVHYDAQRVSVVERDDHELAVVSYTCARDGRRVRLRCRVVVAAD
GAHSTLRAHVARGGMRVVDDDDDDDVDDDDDNNNAGRALRYCGELCFRGV
LRLSEVRGALEAAQVRAVLPDAPSLHVMRLCYATGLRCSHGYMSADGDVV
YWWVKHLHDDSSGGDVEQLPLKWPSHLQTLYRLTPTHARYVQPIEDSTRL
CMWTTPRVALVGDAAHVLSPNMGHGAALAMEDALVLATQLANNWHRRDGH
LEAFYNYQFVRRPYIDAMRVETRRQLFVAQLTAAPAVALRNWLLARVPPS
VLERKLRQSMFDLSDALADYDALSHLN*
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spliced messenger RNA

>Gchil7331.t1 ID=Gchil7331.t1|Name=Gchil7331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2034bp|location=Sequence derived from alignment at tig00000007_pilon:369917..371950- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTTGTTGGCGACAGGGTACAGCGCGCCGCCGCTGCGACTAAACCA
TCGCGGATGGGGCGAGGTGACGGCGGCGGTGGTGACGTCGGTGCTACTGC
CGGTGTTGTCGGTGCGCACGCAGGGTGGTAGCGACGATGTGTCGCGCGCG
CTGCTGGCGCAGCTGGTGGTGCCGGTGACGCTGGCGAAGGTGGCACTGTT
CGTGGCGCTCAACGTGGCGGACCGACGCGCAGACTTTGCGGGACGCAAGC
ACACGCTGGCAGTGGCGCTGGGCGACGCGGCGGCGGCACGGCTGTACGCC
ACACTGATGGCGGGGGCGTACTGCGCGGCGATGGTGGTGGCGCTGACGAT
GGACGCGACGGAGAAGGACGGCGGCGGCGGGGTGTGGCGTGCGGCGCGAC
TGGTGGTGATGATGGGCATGTCGGGACGCGGGGCGGGATTCGTGGCGCGC
TCGCTGCGGGAGCGACCGTACCGTGTGCGGGCGGCGGTGCTGCGGGCGGC
GGTGGCGCTGCCGTCGCGGATGGTGGCGGCCGTGGTGGCGGAGACGCTGA
TGCGGCAGCACGTGCGCGACGCGGGGCGTCTGGCGCTGGTGGCGCTGGTG
CTGCTGCCCATGGTGGTGCTGGCGTCGAAGAAAGAAGAAAAGCAGGGGGA
CAACGAAGAAGAACAACAAGAAGAAGGGAAGGAAGAATTGGACGTGGACG
TGGTGGTGGTGGGCGGCGGCGTGGGCGGACTGACGACGGCGGCCGTGCTG
CAGCGCGTGGGGCGGAGCGTGCGCGTGGTGGAGCGACGCGCGCTACGCGA
CGCGGGCGACGGTGCGGACGTGGCGCTGTGGCCGGGCGCGGTGGCGTTGC
TACGACGGCTGCGCGTCTCGCGCGCCTTTCTGGACGAACAGTGCTTCGCG
CTGCACGCCGTGCGCATGATGGACGGCGCCGGCGCGCGTTGCCTCAATGG
CGTCGACATGCGTCGCGTCGCCGCCGCCGCCGACAAAGACGACAAAGACG
ACGCGCGCTTCGTGTTGGTGGCACGCACCGCGCTCATGGGCGCGCTGCGC
GGACTCGTGCCGCCGCACGTCGTGCACTACGACGCGCAGCGCGTGAGCGT
CGTCGAGCGCGACGACCATGAGTTGGCCGTGGTGTCGTACACTTGTGCTC
GCGACGGCCGTCGCGTGCGACTGCGCTGTCGCGTCGTGGTGGCCGCCGAC
GGCGCACACTCTACTTTGCGTGCGCACGTAGCACGCGGCGGCATGCGCGT
CGTCGACGACGACGACGACGACGACGTCGACGACGACGACGACAACAACA
ACGCGGGGCGCGCGCTGCGCTACTGCGGCGAGCTGTGCTTTCGCGGCGTG
CTGCGACTGAGCGAGGTGCGCGGCGCGCTGGAGGCGGCGCAGGTGCGCGC
GGTGCTGCCGGACGCACCGTCGCTGCACGTCATGCGACTGTGCTACGCGA
CCGGGTTACGTTGTTCGCACGGCTACATGAGCGCCGACGGCGACGTGGTG
TACTGGTGGGTGAAGCATTTGCACGACGATAGTAGCGGTGGTGACGTGGA
GCAGCTGCCGCTCAAGTGGCCGTCGCATCTACAGACGTTGTATCGTCTCA
CGCCCACTCACGCGCGCTACGTGCAGCCCATCGAGGACAGCACGCGCTTG
TGCATGTGGACCACGCCGCGCGTCGCGCTTGTCGGCGACGCCGCGCACGT
GCTTTCGCCCAACATGGGGCACGGCGCCGCGTTGGCCATGGAGGATGCGC
TTGTGTTGGCCACGCAGCTCGCAAACAACTGGCATCGTCGCGACGGACAT
CTCGAGGCCTTTTACAACTACCAGTTCGTGCGTCGCCCTTACATCGACGC
CATGCGCGTCGAGACGCGTCGTCAACTGTTTGTGGCACAACTCACTGCCG
CCCCCGCCGTCGCCCTTCGCAACTGGCTTCTCGCTCGCGTCCCGCCCTCC
GTGTTGGAGCGCAAGTTGCGCCAAAGCATGTTCGATCTGTCCGACGCGCT
TGCCGATTACGACGCTCTCTCGCATCTCAACTAG
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protein sequence of Gchil7331.t1

>Gchil7331.t1 ID=Gchil7331.t1|Name=Gchil7331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=678bp
MSLLATGYSAPPLRLNHRGWGEVTAAVVTSVLLPVLSVRTQGGSDDVSRA
LLAQLVVPVTLAKVALFVALNVADRRADFAGRKHTLAVALGDAAAARLYA
TLMAGAYCAAMVVALTMDATEKDGGGGVWRAARLVVMMGMSGRGAGFVAR
SLRERPYRVRAAVLRAAVALPSRMVAAVVAETLMRQHVRDAGRLALVALV
LLPMVVLASKKEEKQGDNEEEQQEEGKEELDVDVVVVGGGVGGLTTAAVL
QRVGRSVRVVERRALRDAGDGADVALWPGAVALLRRLRVSRAFLDEQCFA
LHAVRMMDGAGARCLNGVDMRRVAAAADKDDKDDARFVLVARTALMGALR
GLVPPHVVHYDAQRVSVVERDDHELAVVSYTCARDGRRVRLRCRVVVAAD
GAHSTLRAHVARGGMRVVDDDDDDDVDDDDDNNNAGRALRYCGELCFRGV
LRLSEVRGALEAAQVRAVLPDAPSLHVMRLCYATGLRCSHGYMSADGDVV
YWWVKHLHDDSSGGDVEQLPLKWPSHLQTLYRLTPTHARYVQPIEDSTRL
CMWTTPRVALVGDAAHVLSPNMGHGAALAMEDALVLATQLANNWHRRDGH
LEAFYNYQFVRRPYIDAMRVETRRQLFVAQLTAAPAVALRNWLLARVPPS
VLERKLRQSMFDLSDALADYDALSHLN*
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mRNA from alignment at tig00000007_pilon:369917..371950-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7331.t1 ID=Gchil7331.t1|Name=Gchil7331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2034bp|location=Sequence derived from alignment at tig00000007_pilon:369917..371950- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTTGTTGGCGACAGGGTACAGCGCGCCGCCGCTGCGACTAAACCA
TCGCGGATGGGGCGAGGTGACGGCGGCGGTGGTGACGTCGGTGCTACTGC
CGGTGTTGTCGGTGCGCACGCAGGGTGGTAGCGACGATGTGTCGCGCGCG
CTGCTGGCGCAGCTGGTGGTGCCGGTGACGCTGGCGAAGGTGGCACTGTT
CGTGGCGCTCAACGTGGCGGACCGACGCGCAGACTTTGCGGGACGCAAGC
ACACGCTGGCAGTGGCGCTGGGCGACGCGGCGGCGGCACGGCTGTACGCC
ACACTGATGGCGGGGGCGTACTGCGCGGCGATGGTGGTGGCGCTGACGAT
GGACGCGACGGAGAAGGACGGCGGCGGCGGGGTGTGGCGTGCGGCGCGAC
TGGTGGTGATGATGGGCATGTCGGGACGCGGGGCGGGATTCGTGGCGCGC
TCGCTGCGGGAGCGACCGTACCGTGTGCGGGCGGCGGTGCTGCGGGCGGC
GGTGGCGCTGCCGTCGCGGATGGTGGCGGCCGTGGTGGCGGAGACGCTGA
TGCGGCAGCACGTGCGCGACGCGGGGCGTCTGGCGCTGGTGGCGCTGGTG
CTGCTGCCCATGGTGGTGCTGGCGTCGAAGAAAGAAGAAAAGCAGGGGGA
CAACGAAGAAGAACAACAAGAAGAAGGGAAGGAAGAATTGGACGTGGACG
TGGTGGTGGTGGGCGGCGGCGTGGGCGGACTGACGACGGCGGCCGTGCTG
CAGCGCGTGGGGCGGAGCGTGCGCGTGGTGGAGCGACGCGCGCTACGCGA
CGCGGGCGACGGTGCGGACGTGGCGCTGTGGCCGGGCGCGGTGGCGTTGC
TACGACGGCTGCGCGTCTCGCGCGCCTTTCTGGACGAACAGTGCTTCGCG
CTGCACGCCGTGCGCATGATGGACGGCGCCGGCGCGCGTTGCCTCAATGG
CGTCGACATGCGTCGCGTCGCCGCCGCCGCCGACAAAGACGACAAAGACG
ACGCGCGCTTCGTGTTGGTGGCACGCACCGCGCTCATGGGCGCGCTGCGC
GGACTCGTGCCGCCGCACGTCGTGCACTACGACGCGCAGCGCGTGAGCGT
CGTCGAGCGCGACGACCATGAGTTGGCCGTGGTGTCGTACACTTGTGCTC
GCGACGGCCGTCGCGTGCGACTGCGCTGTCGCGTCGTGGTGGCCGCCGAC
GGCGCACACTCTACTTTGCGTGCGCACGTAGCACGCGGCGGCATGCGCGT
CGTCGACGACGACGACGACGACGACGTCGACGACGACGACGACAACAACA
ACGCGGGGCGCGCGCTGCGCTACTGCGGCGAGCTGTGCTTTCGCGGCGTG
CTGCGACTGAGCGAGGTGCGCGGCGCGCTGGAGGCGGCGCAGGTGCGCGC
GGTGCTGCCGGACGCACCGTCGCTGCACGTCATGCGACTGTGCTACGCGA
CCGGGTTACGTTGTTCGCACGGCTACATGAGCGCCGACGGCGACGTGGTG
TACTGGTGGGTGAAGCATTTGCACGACGATAGTAGCGGTGGTGACGTGGA
GCAGCTGCCGCTCAAGTGGCCGTCGCATCTACAGACGTTGTATCGTCTCA
CGCCCACTCACGCGCGCTACGTGCAGCCCATCGAGGACAGCACGCGCTTG
TGCATGTGGACCACGCCGCGCGTCGCGCTTGTCGGCGACGCCGCGCACGT
GCTTTCGCCCAACATGGGGCACGGCGCCGCGTTGGCCATGGAGGATGCGC
TTGTGTTGGCCACGCAGCTCGCAAACAACTGGCATCGTCGCGACGGACAT
CTCGAGGCCTTTTACAACTACCAGTTCGTGCGTCGCCCTTACATCGACGC
CATGCGCGTCGAGACGCGTCGTCAACTGTTTGTGGCACAACTCACTGCCG
CCCCCGCCGTCGCCCTTCGCAACTGGCTTCTCGCTCGCGTCCCGCCCTCC
GTGTTGGAGCGCAAGTTGCGCCAAAGCATGTTCGATCTGTCCGACGCGCT
TGCCGATTACGACGCTCTCTCGCATCTCAACTAG
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Coding sequence (CDS) from alignment at tig00000007_pilon:369917..371950-

>Gchil7331.t1 ID=Gchil7331.t1|Name=Gchil7331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2034bp|location=Sequence derived from alignment at tig00000007_pilon:369917..371950- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTTGTTGGCGACAGGGTACAGCGCGCCGCCGCTGCGACTAAACCA
TCGCGGATGGGGCGAGGTGACGGCGGCGGTGGTGACGTCGGTGCTACTGC
CGGTGTTGTCGGTGCGCACGCAGGGTGGTAGCGACGATGTGTCGCGCGCG
CTGCTGGCGCAGCTGGTGGTGCCGGTGACGCTGGCGAAGGTGGCACTGTT
CGTGGCGCTCAACGTGGCGGACCGACGCGCAGACTTTGCGGGACGCAAGC
ACACGCTGGCAGTGGCGCTGGGCGACGCGGCGGCGGCACGGCTGTACGCC
ACACTGATGGCGGGGGCGTACTGCGCGGCGATGGTGGTGGCGCTGACGAT
GGACGCGACGGAGAAGGACGGCGGCGGCGGGGTGTGGCGTGCGGCGCGAC
TGGTGGTGATGATGGGCATGTCGGGACGCGGGGCGGGATTCGTGGCGCGC
TCGCTGCGGGAGCGACCGTACCGTGTGCGGGCGGCGGTGCTGCGGGCGGC
GGTGGCGCTGCCGTCGCGGATGGTGGCGGCCGTGGTGGCGGAGACGCTGA
TGCGGCAGCACGTGCGCGACGCGGGGCGTCTGGCGCTGGTGGCGCTGGTG
CTGCTGCCCATGGTGGTGCTGGCGTCGAAGAAAGAAGAAAAGCAGGGGGA
CAACGAAGAAGAACAACAAGAAGAAGGGAAGGAAGAATTGGACGTGGACG
TGGTGGTGGTGGGCGGCGGCGTGGGCGGACTGACGACGGCGGCCGTGCTG
CAGCGCGTGGGGCGGAGCGTGCGCGTGGTGGAGCGACGCGCGCTACGCGA
CGCGGGCGACGGTGCGGACGTGGCGCTGTGGCCGGGCGCGGTGGCGTTGC
TACGACGGCTGCGCGTCTCGCGCGCCTTTCTGGACGAACAGTGCTTCGCG
CTGCACGCCGTGCGCATGATGGACGGCGCCGGCGCGCGTTGCCTCAATGG
CGTCGACATGCGTCGCGTCGCCGCCGCCGCCGACAAAGACGACAAAGACG
ACGCGCGCTTCGTGTTGGTGGCACGCACCGCGCTCATGGGCGCGCTGCGC
GGACTCGTGCCGCCGCACGTCGTGCACTACGACGCGCAGCGCGTGAGCGT
CGTCGAGCGCGACGACCATGAGTTGGCCGTGGTGTCGTACACTTGTGCTC
GCGACGGCCGTCGCGTGCGACTGCGCTGTCGCGTCGTGGTGGCCGCCGAC
GGCGCACACTCTACTTTGCGTGCGCACGTAGCACGCGGCGGCATGCGCGT
CGTCGACGACGACGACGACGACGACGTCGACGACGACGACGACAACAACA
ACGCGGGGCGCGCGCTGCGCTACTGCGGCGAGCTGTGCTTTCGCGGCGTG
CTGCGACTGAGCGAGGTGCGCGGCGCGCTGGAGGCGGCGCAGGTGCGCGC
GGTGCTGCCGGACGCACCGTCGCTGCACGTCATGCGACTGTGCTACGCGA
CCGGGTTACGTTGTTCGCACGGCTACATGAGCGCCGACGGCGACGTGGTG
TACTGGTGGGTGAAGCATTTGCACGACGATAGTAGCGGTGGTGACGTGGA
GCAGCTGCCGCTCAAGTGGCCGTCGCATCTACAGACGTTGTATCGTCTCA
CGCCCACTCACGCGCGCTACGTGCAGCCCATCGAGGACAGCACGCGCTTG
TGCATGTGGACCACGCCGCGCGTCGCGCTTGTCGGCGACGCCGCGCACGT
GCTTTCGCCCAACATGGGGCACGGCGCCGCGTTGGCCATGGAGGATGCGC
TTGTGTTGGCCACGCAGCTCGCAAACAACTGGCATCGTCGCGACGGACAT
CTCGAGGCCTTTTACAACTACCAGTTCGTGCGTCGCCCTTACATCGACGC
CATGCGCGTCGAGACGCGTCGTCAACTGTTTGTGGCACAACTCACTGCCG
CCCCCGCCGTCGCCCTTCGCAACTGGCTTCTCGCTCGCGTCCCGCCCTCC
GTGTTGGAGCGCAAGTTGCGCCAAAGCATGTTCGATCTGTCCGACGCGCT
TGCCGATTACGACGCTCTCTCGCATCTCAACTAG
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