Gchil7394.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7394.t1
Unique Name	Gchil7394.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	532

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000007_pilon	contig	tig00000007_pilon:844784..846379 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX37406
Preferred name	RUVBL1
PFAMs	TIP49
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04499
KEGG Pathway	ko04310,map04310
GOs	GO:0000003,GO:0000123,GO:0000166,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000491,GO:0000492,GO:0000785,GO:0000790,GO:0000812,GO:0001085,GO:0001091,GO:0001094,GO:0001098,GO:0001099,GO:0002119,GO:0002164,GO:0002682,GO:0002831,GO:0003674,GO:0003678,GO:0003712,GO:0003713,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006355,GO:0006357,GO:0006417,GO:0006464,GO:0006473,GO:0006475,GO:0006508,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007283,GO:0007507,GO:0008026,GO:0008094,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009791,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010755,GO:0010756,GO:0010941,GO:0010954,GO:0015630,GO:0016020,GO:0016043,GO:0016363,GO:0016462,GO:0016569,GO:0016570,GO:0016573,GO:0016579,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017025,GO:0017076,GO:0017111,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0030111,GO:0030162,GO:0030177,GO:0030554,GO:0031011,GO:0031055,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031347,GO:0031497,GO:0031929,GO:0031974,GO:0031981,GO:0032101,GO:0032268,GO:0032270,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033202,GO:0034080,GO:0034248,GO:0034250,GO:0034399,GO:0034508,GO:0034622,GO:0034708,GO:0034724,GO:0034728,GO:0035060,GO:0035097,GO:0035267,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040008,GO:0042127,GO:0042623,GO:0042981,GO:0043044,GO:0043067,GO:0043138,GO:0043139,GO:0043140,GO:0043141,GO:0043167,GO:0043168,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043531,GO:0043543,GO:0043900,GO:0043933,GO:0043967,GO:0043968,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044665,GO:0044703,GO:0045088,GO:0045727,GO:0045862,GO:0045893,GO:0045935,GO:0046620,GO:0048232,GO:0048285,GO:0048507,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048609,GO:0048638,GO:0048731,GO:0048856,GO:0050776,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051117,GO:0051171,GO:0051173,GO:0051225,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051704,GO:0051716,GO:0060255,GO:0060303,GO:0060420,GO:0060828,GO:0061641,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070035,GO:0070209,GO:0070603,GO:0070613,GO:0070646,GO:0070647,GO:0070925,GO:0071103,GO:0071339,GO:0071704,GO:0071824,GO:0071826,GO:0071840,GO:0072359,GO:0080090,GO:0080134,GO:0090263,GO:0090307,GO:0097159,GO:0097255,GO:0097346,GO:0097367,GO:0140014,GO:0140097,GO:0140110,GO:1900150,GO:1901265,GO:1901363,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1902680,GO:1902850,GO:1903047,GO:1903317,GO:1903319,GO:1903506,GO:1903508,GO:1904837,GO:1904949,GO:1990234,GO:1990904,GO:2000026,GO:2000072,GO:2000112,GO:2000269,GO:2001141
Evalue	1.38e-235
EggNOG OGs	COG1224@1\|root,KOG1942@2759\|Eukaryota
Description	ATP-dependent 5'-3' DNA helicase activity
COG category	K
BRITE	ko00000,ko00001,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7394	Gchil7394	Gracilaria chilensis NLEC103_M9 male	gene	tig00000007_pilon 844784..846379 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7394.t1.start1	Gchil7394.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000007_pilon 844784..844786 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7394.t1.CDS1	Gchil7394.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000007_pilon 844784..846379 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7394.t1.exon1	Gchil7394.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000007_pilon 844784..846379 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7394.t1.stop1	Gchil7394.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000007_pilon 846377..846379 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7394.t1	Gchil7394.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000007_pilon 844784..846379 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000007_pilon:844784..846379+
coding sequence from alignment at tig00000007_pilon:844784..846379+

mRNA sequence

>Gchil7394.t1 ID=Gchil7394.t1|Name=Gchil7394.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=532bp
MVGSAEPSAVPTAGPSQPSDDTKKDNPAQAKDGSTRQNEKPDHQMTDVAS
QPSPKPPATGGGPGKAPEPSNTPSAMKIEDVRSTAKAQRIAAHSHVKGLG
LNPTGTAMQMGGGLVGQEQAREAAGIVVELIKTKKMAGRALLLAGGMGTG
KTALALAIAQELGTKIPFCPMVGSEVYSSEVKKTEVLMENFRRAIGLRIK
ESKEVFEGEVIELTPEETENPLGGYGKTISQVVIGLKAGRGTKQLRLDPS
IYEALQKERVCIGDVIYIEANSGAVKRVGRSDVYATEFDLEAEEYVPLPK
GDVHKKKEVVQDVTLHDLDVANARPQGGRDIISMLNQMGKPKKTEITEKL
RAEINKIVSGYIDQGVAELVPGVLFIDEVHMLDLECFAFLNRALESNLAP
IVIFATNRGMTEVSGTDMRAPHGIPVDLLDRCLIIRTQPYSMEDIAVIIQ
IRAKVEGIILKDDNVVAALVEVAARTSLRYATQLLTPASILSSVKGQEHL
TAADVKEADGLFYDAKASARILLESASKYIS*

spliced messenger RNA

>Gchil7394.t1 ID=Gchil7394.t1|Name=Gchil7394.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1596bp|location=Sequence derived from alignment at tig00000007_pilon:844784..846379+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGGCAGCGCAGAGCCCTCTGCTGTTCCCACCGCAGGGCCATCTCA
GCCAAGCGATGATACTAAGAAGGATAACCCAGCACAGGCCAAGGACGGAT
CTACGCGACAAAATGAAAAACCTGATCATCAAATGACCGATGTTGCTTCA
CAACCGTCTCCAAAGCCACCCGCGACGGGTGGAGGGCCCGGAAAGGCTCC
AGAACCGTCAAACACACCTTCCGCAATGAAAATCGAAGATGTGCGTTCTA
CAGCGAAAGCTCAGCGAATAGCAGCACATTCGCACGTCAAAGGCTTGGGC
CTAAACCCGACTGGAACAGCCATGCAGATGGGGGGAGGATTAGTTGGTCA
GGAACAGGCAAGGGAAGCAGCTGGAATCGTTGTTGAGCTCATTAAAACCA
AGAAGATGGCAGGTAGAGCTCTATTGCTTGCCGGTGGTATGGGTACTGGA
AAAACAGCCCTGGCGCTTGCTATCGCCCAAGAGCTTGGAACCAAGATTCC
GTTCTGCCCTATGGTAGGCTCAGAAGTCTATTCAAGCGAGGTGAAAAAGA
CCGAGGTTCTTATGGAAAACTTCAGAAGAGCAATAGGGCTACGAATTAAA
GAGAGCAAAGAAGTTTTTGAGGGAGAGGTGATCGAATTGACACCGGAGGA
AACAGAGAACCCATTGGGAGGCTACGGGAAAACAATAAGCCAAGTAGTTA
TTGGACTGAAAGCCGGTCGCGGCACAAAGCAGCTAAGACTTGACCCTTCT
ATTTACGAAGCGTTGCAGAAAGAACGGGTTTGCATTGGGGATGTTATCTA
TATTGAAGCCAATTCAGGTGCCGTGAAGCGCGTAGGAAGGAGCGACGTGT
ACGCGACAGAATTTGATCTTGAGGCCGAGGAGTACGTCCCACTACCTAAA
GGGGATGTTCACAAGAAGAAAGAAGTTGTGCAGGATGTGACCTTACATGA
CCTCGATGTTGCGAATGCTAGACCTCAAGGAGGCCGTGACATAATCAGTA
TGCTGAATCAAATGGGTAAACCAAAGAAGACCGAGATCACCGAGAAGCTA
CGCGCAGAAATTAACAAGATCGTATCGGGTTATATTGATCAGGGAGTGGC
AGAGCTTGTTCCTGGAGTGTTATTTATTGATGAGGTTCACATGCTCGATC
TGGAGTGTTTCGCTTTCTTAAATAGGGCTCTGGAATCTAATTTGGCCCCG
ATAGTCATTTTTGCAACGAACAGAGGAATGACCGAAGTAAGTGGTACAGA
TATGCGGGCACCACACGGCATTCCTGTAGATCTTTTGGACCGATGCCTAA
TCATTAGAACGCAACCATATTCCATGGAAGATATTGCCGTTATCATCCAA
ATAAGAGCAAAGGTGGAAGGAATCATACTAAAGGACGACAATGTTGTGGC
GGCACTCGTTGAAGTTGCTGCTCGAACTTCATTGCGATACGCTACGCAGT
TGTTGACTCCTGCGAGCATTCTGTCAAGTGTGAAAGGCCAAGAACATCTG
ACGGCAGCCGATGTTAAGGAAGCTGATGGACTGTTTTACGATGCCAAAGC
GTCCGCACGTATACTGCTGGAGAGTGCATCGAAATATATCAGTTGA

protein sequence of Gchil7394.t1

>Gchil7394.t1 ID=Gchil7394.t1|Name=Gchil7394.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=532bp
MVGSAEPSAVPTAGPSQPSDDTKKDNPAQAKDGSTRQNEKPDHQMTDVAS
QPSPKPPATGGGPGKAPEPSNTPSAMKIEDVRSTAKAQRIAAHSHVKGLG
LNPTGTAMQMGGGLVGQEQAREAAGIVVELIKTKKMAGRALLLAGGMGTG
KTALALAIAQELGTKIPFCPMVGSEVYSSEVKKTEVLMENFRRAIGLRIK
ESKEVFEGEVIELTPEETENPLGGYGKTISQVVIGLKAGRGTKQLRLDPS
IYEALQKERVCIGDVIYIEANSGAVKRVGRSDVYATEFDLEAEEYVPLPK
GDVHKKKEVVQDVTLHDLDVANARPQGGRDIISMLNQMGKPKKTEITEKL
RAEINKIVSGYIDQGVAELVPGVLFIDEVHMLDLECFAFLNRALESNLAP
IVIFATNRGMTEVSGTDMRAPHGIPVDLLDRCLIIRTQPYSMEDIAVIIQ
IRAKVEGIILKDDNVVAALVEVAARTSLRYATQLLTPASILSSVKGQEHL
TAADVKEADGLFYDAKASARILLESASKYIS*

mRNA from alignment at tig00000007_pilon:844784..846379+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7394.t1 ID=Gchil7394.t1|Name=Gchil7394.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1596bp|location=Sequence derived from alignment at tig00000007_pilon:844784..846379+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTAGGCAGCGCAGAGCCCTCTGCTGTTCCCACCGCAGGGCCATCTCA
GCCAAGCGATGATACTAAGAAGGATAACCCAGCACAGGCCAAGGACGGAT
CTACGCGACAAAATGAAAAACCTGATCATCAAATGACCGATGTTGCTTCA
CAACCGTCTCCAAAGCCACCCGCGACGGGTGGAGGGCCCGGAAAGGCTCC
AGAACCGTCAAACACACCTTCCGCAATGAAAATCGAAGATGTGCGTTCTA
CAGCGAAAGCTCAGCGAATAGCAGCACATTCGCACGTCAAAGGCTTGGGC
CTAAACCCGACTGGAACAGCCATGCAGATGGGGGGAGGATTAGTTGGTCA
GGAACAGGCAAGGGAAGCAGCTGGAATCGTTGTTGAGCTCATTAAAACCA
AGAAGATGGCAGGTAGAGCTCTATTGCTTGCCGGTGGTATGGGTACTGGA
AAAACAGCCCTGGCGCTTGCTATCGCCCAAGAGCTTGGAACCAAGATTCC
GTTCTGCCCTATGGTAGGCTCAGAAGTCTATTCAAGCGAGGTGAAAAAGA
CCGAGGTTCTTATGGAAAACTTCAGAAGAGCAATAGGGCTACGAATTAAA
GAGAGCAAAGAAGTTTTTGAGGGAGAGGTGATCGAATTGACACCGGAGGA
AACAGAGAACCCATTGGGAGGCTACGGGAAAACAATAAGCCAAGTAGTTA
TTGGACTGAAAGCCGGTCGCGGCACAAAGCAGCTAAGACTTGACCCTTCT
ATTTACGAAGCGTTGCAGAAAGAACGGGTTTGCATTGGGGATGTTATCTA
TATTGAAGCCAATTCAGGTGCCGTGAAGCGCGTAGGAAGGAGCGACGTGT
ACGCGACAGAATTTGATCTTGAGGCCGAGGAGTACGTCCCACTACCTAAA
GGGGATGTTCACAAGAAGAAAGAAGTTGTGCAGGATGTGACCTTACATGA
CCTCGATGTTGCGAATGCTAGACCTCAAGGAGGCCGTGACATAATCAGTA
TGCTGAATCAAATGGGTAAACCAAAGAAGACCGAGATCACCGAGAAGCTA
CGCGCAGAAATTAACAAGATCGTATCGGGTTATATTGATCAGGGAGTGGC
AGAGCTTGTTCCTGGAGTGTTATTTATTGATGAGGTTCACATGCTCGATC
TGGAGTGTTTCGCTTTCTTAAATAGGGCTCTGGAATCTAATTTGGCCCCG
ATAGTCATTTTTGCAACGAACAGAGGAATGACCGAAGTAAGTGGTACAGA
TATGCGGGCACCACACGGCATTCCTGTAGATCTTTTGGACCGATGCCTAA
TCATTAGAACGCAACCATATTCCATGGAAGATATTGCCGTTATCATCCAA
ATAAGAGCAAAGGTGGAAGGAATCATACTAAAGGACGACAATGTTGTGGC
GGCACTCGTTGAAGTTGCTGCTCGAACTTCATTGCGATACGCTACGCAGT
TGTTGACTCCTGCGAGCATTCTGTCAAGTGTGAAAGGCCAAGAACATCTG
ACGGCAGCCGATGTTAAGGAAGCTGATGGACTGTTTTACGATGCCAAAGC
GTCCGCACGTATACTGCTGGAGAGTGCATCGAAATATATCAGTTGA

Coding sequence (CDS) from alignment at tig00000007_pilon:844784..846379+

>Gchil7394.t1 ID=Gchil7394.t1|Name=Gchil7394.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1596bp|location=Sequence derived from alignment at tig00000007_pilon:844784..846379+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTAGGCAGCGCAGAGCCCTCTGCTGTTCCCACCGCAGGGCCATCTCA
GCCAAGCGATGATACTAAGAAGGATAACCCAGCACAGGCCAAGGACGGAT
CTACGCGACAAAATGAAAAACCTGATCATCAAATGACCGATGTTGCTTCA
CAACCGTCTCCAAAGCCACCCGCGACGGGTGGAGGGCCCGGAAAGGCTCC
AGAACCGTCAAACACACCTTCCGCAATGAAAATCGAAGATGTGCGTTCTA
CAGCGAAAGCTCAGCGAATAGCAGCACATTCGCACGTCAAAGGCTTGGGC
CTAAACCCGACTGGAACAGCCATGCAGATGGGGGGAGGATTAGTTGGTCA
GGAACAGGCAAGGGAAGCAGCTGGAATCGTTGTTGAGCTCATTAAAACCA
AGAAGATGGCAGGTAGAGCTCTATTGCTTGCCGGTGGTATGGGTACTGGA
AAAACAGCCCTGGCGCTTGCTATCGCCCAAGAGCTTGGAACCAAGATTCC
GTTCTGCCCTATGGTAGGCTCAGAAGTCTATTCAAGCGAGGTGAAAAAGA
CCGAGGTTCTTATGGAAAACTTCAGAAGAGCAATAGGGCTACGAATTAAA
GAGAGCAAAGAAGTTTTTGAGGGAGAGGTGATCGAATTGACACCGGAGGA
AACAGAGAACCCATTGGGAGGCTACGGGAAAACAATAAGCCAAGTAGTTA
TTGGACTGAAAGCCGGTCGCGGCACAAAGCAGCTAAGACTTGACCCTTCT
ATTTACGAAGCGTTGCAGAAAGAACGGGTTTGCATTGGGGATGTTATCTA
TATTGAAGCCAATTCAGGTGCCGTGAAGCGCGTAGGAAGGAGCGACGTGT
ACGCGACAGAATTTGATCTTGAGGCCGAGGAGTACGTCCCACTACCTAAA
GGGGATGTTCACAAGAAGAAAGAAGTTGTGCAGGATGTGACCTTACATGA
CCTCGATGTTGCGAATGCTAGACCTCAAGGAGGCCGTGACATAATCAGTA
TGCTGAATCAAATGGGTAAACCAAAGAAGACCGAGATCACCGAGAAGCTA
CGCGCAGAAATTAACAAGATCGTATCGGGTTATATTGATCAGGGAGTGGC
AGAGCTTGTTCCTGGAGTGTTATTTATTGATGAGGTTCACATGCTCGATC
TGGAGTGTTTCGCTTTCTTAAATAGGGCTCTGGAATCTAATTTGGCCCCG
ATAGTCATTTTTGCAACGAACAGAGGAATGACCGAAGTAAGTGGTACAGA
TATGCGGGCACCACACGGCATTCCTGTAGATCTTTTGGACCGATGCCTAA
TCATTAGAACGCAACCATATTCCATGGAAGATATTGCCGTTATCATCCAA
ATAAGAGCAAAGGTGGAAGGAATCATACTAAAGGACGACAATGTTGTGGC
GGCACTCGTTGAAGTTGCTGCTCGAACTTCATTGCGATACGCTACGCAGT
TGTTGACTCCTGCGAGCATTCTGTCAAGTGTGAAAGGCCAAGAACATCTG
ACGGCAGCCGATGTTAAGGAAGCTGATGGACTGTTTTACGATGCCAAAGC
GTCCGCACGTATACTGCTGGAGAGTGCATCGAAATATATCAGTTGA