Gchil533.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil533.t1
Unique NameGchil533.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length302
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000060_piloncontigtig00000060_pilon:728342..729247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1415779.JOMH01000001_gene992
Max annot lvl1224|Proteobacteria
Evalue3.55e-05
EggNOG OGsCOG4676@1|root,COG4676@2|Bacteria,1NN1U@1224|Proteobacteria
DescriptionProtein conserved in bacteria
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil533Gchil533Gracilaria chilensis NLEC103_M9 malegenetig00000060_pilon 728342..729247 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil533.t1.start1Gchil533.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000060_pilon 728342..728344 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil533.t1.CDS1Gchil533.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000060_pilon 728342..729247 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil533.t1.exon1Gchil533.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000060_pilon 728342..729247 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil533.t1.stop1Gchil533.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000060_pilon 729245..729247 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil533.t1Gchil533.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000060_pilon 728342..729247 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil533.t1 ID=Gchil533.t1|Name=Gchil533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=302bp
MSQSASNRSFHSVLRLAAAALCIALSSACERSCALRFCGGPAVAFIGAPD
APATPAVCGPVGHGVMRRRALRRVGHTQLRLRGYKRLKRADKLGLNATLF
KPVLAPLRFGGSALALSTPLNDRQRQRLHGACAVVRVLEWGDELASRSSA
RRRRHRRRRWHRRGRRADCVAFRVRVAELRVDLEWDSRDDLDLFVTQPDN
KEVFFQSTSNSGHLLRDDNRRACGRATPGGVETAVYARALPTSGAYRVFA
EHSRSCAQGATHWRLRIALRGRVISDVSGSSQLPLGGVIHTSVARFNVSS
V*
back to top

spliced messenger RNA

>Gchil533.t1 ID=Gchil533.t1|Name=Gchil533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=906bp|location=Sequence derived from alignment at tig00000060_pilon:728342..729247+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCAAAGCGCTTCAAACCGGTCGTTTCACTCCGTGCTGCGGCTGGC
AGCCGCCGCGCTTTGCATTGCCTTGAGCTCCGCCTGTGAGCGCTCGTGCG
CGCTGCGCTTCTGCGGCGGCCCAGCCGTCGCGTTCATCGGCGCGCCGGAC
GCCCCGGCCACACCCGCCGTGTGCGGACCCGTTGGCCATGGTGTCATGCG
ACGACGAGCGTTGCGACGCGTTGGTCACACGCAATTAAGATTGCGCGGAT
ACAAACGTCTCAAACGTGCCGATAAACTCGGCCTCAACGCCACACTGTTC
AAGCCTGTGTTGGCGCCGCTACGCTTCGGTGGCTCCGCGTTGGCGCTCTC
GACGCCGCTCAACGATCGACAGCGCCAACGTCTGCACGGCGCGTGCGCGG
TGGTGCGCGTGCTTGAGTGGGGTGATGAGCTTGCATCGCGCTCCTCTGCC
CGTCGGCGTCGGCATCGACGTCGACGTTGGCATCGACGTGGTCGTCGCGC
GGACTGCGTGGCGTTCCGCGTGCGCGTGGCCGAGTTGCGTGTGGATTTGG
AATGGGACTCGCGCGACGATTTGGATCTGTTTGTGACGCAGCCCGACAAC
AAAGAGGTGTTCTTCCAATCCACCAGCAACAGCGGACATCTGTTACGCGA
CGACAACCGACGCGCCTGCGGACGCGCCACACCAGGCGGCGTGGAGACGG
CCGTGTACGCGCGCGCCTTACCAACGTCCGGTGCGTACCGTGTGTTTGCC
GAGCACTCgcgcagctgcgcgcagggcgccacgcactggcgtttgcgcat
tgcgctgcgcggccgcgtcatcagcgacgtcagcggcagctcgcagctgc
cgcTTGGCGGCGTCATTCACACCAGCGTGGCGCGTTTCAACGTTTCCTCT
GTCTGA
back to top

protein sequence of Gchil533.t1

>Gchil533.t1 ID=Gchil533.t1|Name=Gchil533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=302bp
MSQSASNRSFHSVLRLAAAALCIALSSACERSCALRFCGGPAVAFIGAPD
APATPAVCGPVGHGVMRRRALRRVGHTQLRLRGYKRLKRADKLGLNATLF
KPVLAPLRFGGSALALSTPLNDRQRQRLHGACAVVRVLEWGDELASRSSA
RRRRHRRRRWHRRGRRADCVAFRVRVAELRVDLEWDSRDDLDLFVTQPDN
KEVFFQSTSNSGHLLRDDNRRACGRATPGGVETAVYARALPTSGAYRVFA
EHSRSCAQGATHWRLRIALRGRVISDVSGSSQLPLGGVIHTSVARFNVSS
V*
back to top

mRNA from alignment at tig00000060_pilon:728342..729247+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil533.t1 ID=Gchil533.t1|Name=Gchil533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=906bp|location=Sequence derived from alignment at tig00000060_pilon:728342..729247+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCAAAGCGCTTCAAACCGGTCGTTTCACTCCGTGCTGCGGCTGGC
AGCCGCCGCGCTTTGCATTGCCTTGAGCTCCGCCTGTGAGCGCTCGTGCG
CGCTGCGCTTCTGCGGCGGCCCAGCCGTCGCGTTCATCGGCGCGCCGGAC
GCCCCGGCCACACCCGCCGTGTGCGGACCCGTTGGCCATGGTGTCATGCG
ACGACGAGCGTTGCGACGCGTTGGTCACACGCAATTAAGATTGCGCGGAT
ACAAACGTCTCAAACGTGCCGATAAACTCGGCCTCAACGCCACACTGTTC
AAGCCTGTGTTGGCGCCGCTACGCTTCGGTGGCTCCGCGTTGGCGCTCTC
GACGCCGCTCAACGATCGACAGCGCCAACGTCTGCACGGCGCGTGCGCGG
TGGTGCGCGTGCTTGAGTGGGGTGATGAGCTTGCATCGCGCTCCTCTGCC
CGTCGGCGTCGGCATCGACGTCGACGTTGGCATCGACGTGGTCGTCGCGC
GGACTGCGTGGCGTTCCGCGTGCGCGTGGCCGAGTTGCGTGTGGATTTGG
AATGGGACTCGCGCGACGATTTGGATCTGTTTGTGACGCAGCCCGACAAC
AAAGAGGTGTTCTTCCAATCCACCAGCAACAGCGGACATCTGTTACGCGA
CGACAACCGACGCGCCTGCGGACGCGCCACACCAGGCGGCGTGGAGACGG
CCGTGTACGCGCGCGCCTTACCAACGTCCGGTGCGTACCGTGTGTTTGCC
GAGCACTCgcgcagctgcgcgcagggcgccacgcactggcgtttgcgcat
tgcgctgcgcggccgcgtcatcagcgacgtcagcggcagctcgcagctgc
cgcTTGGCGGCGTCATTCACACCAGCGTGGCGCGTTTCAACGTTTCCTCT
GTCTGA
back to top

Coding sequence (CDS) from alignment at tig00000060_pilon:728342..729247+

>Gchil533.t1 ID=Gchil533.t1|Name=Gchil533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=906bp|location=Sequence derived from alignment at tig00000060_pilon:728342..729247+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCAAAGCGCTTCAAACCGGTCGTTTCACTCCGTGCTGCGGCTGGC
AGCCGCCGCGCTTTGCATTGCCTTGAGCTCCGCCTGTGAGCGCTCGTGCG
CGCTGCGCTTCTGCGGCGGCCCAGCCGTCGCGTTCATCGGCGCGCCGGAC
GCCCCGGCCACACCCGCCGTGTGCGGACCCGTTGGCCATGGTGTCATGCG
ACGACGAGCGTTGCGACGCGTTGGTCACACGCAATTAAGATTGCGCGGAT
ACAAACGTCTCAAACGTGCCGATAAACTCGGCCTCAACGCCACACTGTTC
AAGCCTGTGTTGGCGCCGCTACGCTTCGGTGGCTCCGCGTTGGCGCTCTC
GACGCCGCTCAACGATCGACAGCGCCAACGTCTGCACGGCGCGTGCGCGG
TGGTGCGCGTGCTTGAGTGGGGTGATGAGCTTGCATCGCGCTCCTCTGCC
CGTCGGCGTCGGCATCGACGTCGACGTTGGCATCGACGTGGTCGTCGCGC
GGACTGCGTGGCGTTCCGCGTGCGCGTGGCCGAGTTGCGTGTGGATTTGG
AATGGGACTCGCGCGACGATTTGGATCTGTTTGTGACGCAGCCCGACAAC
AAAGAGGTGTTCTTCCAATCCACCAGCAACAGCGGACATCTGTTACGCGA
CGACAACCGACGCGCCTGCGGACGCGCCACACCAGGCGGCGTGGAGACGG
CCGTGTACGCGCGCGCCTTACCAACGTCCGGTGCGTACCGTGTGTTTGCC
GAGCACTCgcgcagctgcgcgcagggcgccacgcactggcgtttgcgcat
tgcgctgcgcggccgcgtcatcagcgacgtcagcggcagctcgcagctgc
cgcTTGGCGGCGTCATTCACACCAGCGTGGCGCGTTTCAACGTTTCCTCT
GTCTGA
back to top