Gchil459.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil459.t1
Unique NameGchil459.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length436
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000060_piloncontigtig00000060_pilon:304393..305802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_04553T0
Max annot lvl4751|Fungi
Evalue1.33e-19
EggNOG OGs2E3H1@1|root,2SAJC@2759|Eukaryota,3ARBF@33154|Opisthokonta,3PFVF@4751|Fungi
DescriptionAllomyces macrogynus ATCC 38327
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil459Gchil459Gracilaria chilensis NLEC103_M9 malegenetig00000060_pilon 304393..305802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil459.t1Gchil459.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000060_pilon 304393..305802 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil459.t1.stop1Gchil459.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000060_pilon 304393..304395 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil459.t1.CDS1Gchil459.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000060_pilon 304393..305414 -
Gchil459.t1.CDS2Gchil459.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000060_pilon 305517..305802 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil459.t1.exon1Gchil459.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000060_pilon 304393..305414 -
Gchil459.t1.exon2Gchil459.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000060_pilon 305517..305802 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil459.t1.intron1Gchil459.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000060_pilon 305415..305516 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil459.t1.start1Gchil459.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000060_pilon 305800..305802 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil459.t1 ID=Gchil459.t1|Name=Gchil459.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=436bp
MTSNKVSKLSTALLSLVALILIKADVVLGHSHLADPLPTRELHCRVGAQQ
GRDCYGPCPRADDYGRLNHPWINEHNPAQTWKRGDVVNIRWHRDNHDGTG
FVRLVLVPVDKMMDKTAHDQYAFHFSCMNEGLHRCSDRSFDTCGNDAEGM
AWQKLVQVPTSYPDGVYVLGWSWYGGGDYRAMSFFGDYYSCSFVEIKGGV
AVTESYEPKWDGSTCVSATDRLGICWKEPCHVGRMYEMEPFEFKDGTKPQ
AIQRSWFGEQHDNGDHDHSRSSGSSVSLGSGASVSIGARSGGRRGEDNAA
SALDLDVGQSSPQTSNDENSFNTELISTGALGVFFLDFTNWEKIPVKDGE
TYRLDNFKNGFTVEAFYNGDVRFIDFFVDGTRVRRERSQPFVMQGNRGKL
IYGWNPPVGHIVKVQVKVTSKAGRTEGFEADIEFE*
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spliced messenger RNA

>Gchil459.t1 ID=Gchil459.t1|Name=Gchil459.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1308bp|location=Sequence derived from alignment at tig00000060_pilon:304393..305802- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAGTAACAAAGTATCGAAATTATCAACGGCTCTTCTATCACTTGT
AGCTCTTATCTTGATAAAGGCGGACGTCGTTCTCGGACATTCTCATTTGG
CAGACCCGCTTCCTACTCGTGAATTGCACTGTCGTGTCGGCGCACAACAG
GGACGAGATTGTTACGGACCTTGTCCAAGGGCAGATGACTATGGACGTTT
AAATCATCCGTGGATTAACGAGCACAACCCTGCACAAACATGGAAACGAG
GCGATGTGGTAAATATTAGGTGGCATAGAGATAACCACGACGGAACTGGT
TTTGTGCGACTGGTTCTTGTCCCAGTGGACAAAATGATGGATAAGACGGC
TCACGACCAATACGCATTCCACTTTTCGTGCATGAACGAAGGTCTTCACC
GTTGCTCTGACCGATCATTTGACACTTGCGGAAACGATGCAGAAGGCATG
GCATGGCAAAAACTGGTACAAGTCCCAACTAGCTATCCGGATGGAGTTTA
CGTATTGGGATGGTCTTGGTACGGGGGCGGCGATTATCGAGCGATGAGTT
TCTTTGGAGACTACTACAGCTGCAGTTTCGTGGAAATAAAGGGCGGCGTG
GCCGTGACTGAGAGTTATGAACCGAAATGGGATGGTAGCACATGTGTGAG
TGCGACGGATCGATTGGGAATATGTTGGAAGGAACCTTGTCATGTTGGTC
GCATGTATGAGATGGAACCGTTTGAATTCAAAGACGGTACGAAACCCCAA
GCGATTCAACGCTCTTGGTTTGGTGAGCAACATGATAACGGCGACCACGA
CCATAGTCGTTCGTCCGGGAGCTCAGTTTCGTTAGGTTCTGGAGCATCTG
TATCAATTGGGGCACGTTCTGGAGGAAGACGTGGAGAAGACAACGCTGCA
AGCGCACTCGATCTGGATGTAGGACAATCGTCGCCACAAACATCCAATGA
TGAAAACTCTTTCAACACAGAGTTGATATCAACTGGTGCTCTAGGCGTAT
TCTTCCTCGACTTCACAAATTGGGAGAAGATTCCCGTGAAAGACGGAGAG
ACATATCGATTGGATAATTTTAAGAACGGCTTCACGGTGGAAGCATTCTA
TAACGGTGACGTAAGATTCATTGACTTCTTCGTGGATGGTACAAGAGTTC
GCCGCGAACGATCGCAGCCATTCGTGATGCAAGGAAACAGAGGAAAGCTA
ATCTACGGGTGGAACCCGCCTGTAGGGCACATCGTGAAGGTGCAAGTGAA
GGTGACGTCCAAGGCTGGGCGCACTGAGGGTTTCGAAGCCGATATCGAAT
TTGAATGA
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protein sequence of Gchil459.t1

>Gchil459.t1 ID=Gchil459.t1|Name=Gchil459.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=436bp
MTSNKVSKLSTALLSLVALILIKADVVLGHSHLADPLPTRELHCRVGAQQ
GRDCYGPCPRADDYGRLNHPWINEHNPAQTWKRGDVVNIRWHRDNHDGTG
FVRLVLVPVDKMMDKTAHDQYAFHFSCMNEGLHRCSDRSFDTCGNDAEGM
AWQKLVQVPTSYPDGVYVLGWSWYGGGDYRAMSFFGDYYSCSFVEIKGGV
AVTESYEPKWDGSTCVSATDRLGICWKEPCHVGRMYEMEPFEFKDGTKPQ
AIQRSWFGEQHDNGDHDHSRSSGSSVSLGSGASVSIGARSGGRRGEDNAA
SALDLDVGQSSPQTSNDENSFNTELISTGALGVFFLDFTNWEKIPVKDGE
TYRLDNFKNGFTVEAFYNGDVRFIDFFVDGTRVRRERSQPFVMQGNRGKL
IYGWNPPVGHIVKVQVKVTSKAGRTEGFEADIEFE*
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mRNA from alignment at tig00000060_pilon:304393..305802-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil459.t1 ID=Gchil459.t1|Name=Gchil459.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1410bp|location=Sequence derived from alignment at tig00000060_pilon:304393..305802- (Gracilaria chilensis NLEC103_M9 male)
ATGACAAGTAACAAAGTATCGAAATTATCAACGGCTCTTCTATCACTTGT
AGCTCTTATCTTGATAAAGGCGGACGTCGTTCTCGGACATTCTCATTTGG
CAGACCCGCTTCCTACTCGTGAATTGCACTGTCGTGTCGGCGCACAACAG
GGACGAGATTGTTACGGACCTTGTCCAAGGGCAGATGACTATGGACGTTT
AAATCATCCGTGGATTAACGAGCACAACCCTGCACAAACATGGAAACGAG
GCGATGTGGTAAATATTAGGTGGCATAGAGATAACCGTAAGTATTGAAAC
ATCAACGCATTACGACATACTTGGGATTGCCACGAATTGCTAACAAAATC
CTGGATGTTACACGCCCGTACGCTTTCCTTTCAAACAGACGACGGAACTG
GTTTTGTGCGACTGGTTCTTGTCCCAGTGGACAAAATGATGGATAAGACG
GCTCACGACCAATACGCATTCCACTTTTCGTGCATGAACGAAGGTCTTCA
CCGTTGCTCTGACCGATCATTTGACACTTGCGGAAACGATGCAGAAGGCA
TGGCATGGCAAAAACTGGTACAAGTCCCAACTAGCTATCCGGATGGAGTT
TACGTATTGGGATGGTCTTGGTACGGGGGCGGCGATTATCGAGCGATGAG
TTTCTTTGGAGACTACTACAGCTGCAGTTTCGTGGAAATAAAGGGCGGCG
TGGCCGTGACTGAGAGTTATGAACCGAAATGGGATGGTAGCACATGTGTG
AGTGCGACGGATCGATTGGGAATATGTTGGAAGGAACCTTGTCATGTTGG
TCGCATGTATGAGATGGAACCGTTTGAATTCAAAGACGGTACGAAACCCC
AAGCGATTCAACGCTCTTGGTTTGGTGAGCAACATGATAACGGCGACCAC
GACCATAGTCGTTCGTCCGGGAGCTCAGTTTCGTTAGGTTCTGGAGCATC
TGTATCAATTGGGGCACGTTCTGGAGGAAGACGTGGAGAAGACAACGCTG
CAAGCGCACTCGATCTGGATGTAGGACAATCGTCGCCACAAACATCCAAT
GATGAAAACTCTTTCAACACAGAGTTGATATCAACTGGTGCTCTAGGCGT
ATTCTTCCTCGACTTCACAAATTGGGAGAAGATTCCCGTGAAAGACGGAG
AGACATATCGATTGGATAATTTTAAGAACGGCTTCACGGTGGAAGCATTC
TATAACGGTGACGTAAGATTCATTGACTTCTTCGTGGATGGTACAAGAGT
TCGCCGCGAACGATCGCAGCCATTCGTGATGCAAGGAAACAGAGGAAAGC
TAATCTACGGGTGGAACCCGCCTGTAGGGCACATCGTGAAGGTGCAAGTG
AAGGTGACGTCCAAGGCTGGGCGCACTGAGGGTTTCGAAGCCGATATCGA
ATTTGAATGA
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Coding sequence (CDS) from alignment at tig00000060_pilon:304393..305802-

>Gchil459.t1 ID=Gchil459.t1|Name=Gchil459.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1308bp|location=Sequence derived from alignment at tig00000060_pilon:304393..305802- (Gracilaria chilensis NLEC103_M9 male)
ATGACAAGTAACAAAGTATCGAAATTATCAACGGCTCTTCTATCACTTGT
AGCTCTTATCTTGATAAAGGCGGACGTCGTTCTCGGACATTCTCATTTGG
CAGACCCGCTTCCTACTCGTGAATTGCACTGTCGTGTCGGCGCACAACAG
GGACGAGATTGTTACGGACCTTGTCCAAGGGCAGATGACTATGGACGTTT
AAATCATCCGTGGATTAACGAGCACAACCCTGCACAAACATGGAAACGAG
GCGATGTGGTAAATATTAGGTGGCATAGAGATAACCACGACGGAACTGGT
TTTGTGCGACTGGTTCTTGTCCCAGTGGACAAAATGATGGATAAGACGGC
TCACGACCAATACGCATTCCACTTTTCGTGCATGAACGAAGGTCTTCACC
GTTGCTCTGACCGATCATTTGACACTTGCGGAAACGATGCAGAAGGCATG
GCATGGCAAAAACTGGTACAAGTCCCAACTAGCTATCCGGATGGAGTTTA
CGTATTGGGATGGTCTTGGTACGGGGGCGGCGATTATCGAGCGATGAGTT
TCTTTGGAGACTACTACAGCTGCAGTTTCGTGGAAATAAAGGGCGGCGTG
GCCGTGACTGAGAGTTATGAACCGAAATGGGATGGTAGCACATGTGTGAG
TGCGACGGATCGATTGGGAATATGTTGGAAGGAACCTTGTCATGTTGGTC
GCATGTATGAGATGGAACCGTTTGAATTCAAAGACGGTACGAAACCCCAA
GCGATTCAACGCTCTTGGTTTGGTGAGCAACATGATAACGGCGACCACGA
CCATAGTCGTTCGTCCGGGAGCTCAGTTTCGTTAGGTTCTGGAGCATCTG
TATCAATTGGGGCACGTTCTGGAGGAAGACGTGGAGAAGACAACGCTGCA
AGCGCACTCGATCTGGATGTAGGACAATCGTCGCCACAAACATCCAATGA
TGAAAACTCTTTCAACACAGAGTTGATATCAACTGGTGCTCTAGGCGTAT
TCTTCCTCGACTTCACAAATTGGGAGAAGATTCCCGTGAAAGACGGAGAG
ACATATCGATTGGATAATTTTAAGAACGGCTTCACGGTGGAAGCATTCTA
TAACGGTGACGTAAGATTCATTGACTTCTTCGTGGATGGTACAAGAGTTC
GCCGCGAACGATCGCAGCCATTCGTGATGCAAGGAAACAGAGGAAAGCTA
ATCTACGGGTGGAACCCGCCTGTAGGGCACATCGTGAAGGTGCAAGTGAA
GGTGACGTCCAAGGCTGGGCGCACTGAGGGTTTCGAAGCCGATATCGAAT
TTGAATGA
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