Gchil7578.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7578.t1
Unique NameGchil7578.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length205
Homology
BLAST of Gchil7578.t1 vs. uniprot
Match: A0A2V3ITL0_9FLOR (Putative E3 ubiquitin-protein ligase HIP1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITL0_9FLOR)

HSP 1 Score: 237 bits (604), Expect = 1.780e-76
Identity = 119/189 (62.96%), Postives = 145/189 (76.72%), Query Frame = 0
Query:   23 TAHNATITT-PSSSSADLFVVVIVSVFLFLAASILRLVPWVVPISSRPRLSAGRALAAASQYEPIAGFANFGYGTLAAVATDRHVPTRAV------PTYEMLLEIEDRIGYAKQGLTEEQIAILPIYQCDDRDCERHERRGMYCAICRDLYAQGHTVSILPCGDEFHAACISPWLKQQATCPLCRCRFA 204
            T  NAT T  P + SAD F+V+ VS+FLFL ASILR++PW  P+++RPR +A R+LA+A++   +  F+ F YGT+     D  +P  A       P+YE LLEIEDRIG AK GLT++QIAILP Y+CD+ DCERHERRGMYCAICRD+YAQGHTVSILPCGDEFH  CI+PWL+QQATCPLCRCRFA
Sbjct:   16 TLRNATSTVAPPAHSADFFMVIFVSIFLFLTASILRILPWAAPLATRPRWAARRSLASAARVNSLRRFSAFTYGTI-----DPMMPAEARFAGAGGPSYETLLEIEDRIGNAKHGLTDDQIAILPTYRCDEHDCERHERRGMYCAICRDMYAQGHTVSILPCGDEFHVDCIAPWLRQQATCPLCRCRFA 199          
BLAST of Gchil7578.t1 vs. uniprot
Match: UPI001C4D2FEA (E3 ubiquitin-protein ligase BIG BROTHER-like n=2 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4D2FEA)

HSP 1 Score: 76.6 bits (187), Expect = 3.360e-13
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 0
Query:  113 TYEMLLEIEDRIGYAKQGLTEEQIAILPIYQCDDRDCERHERRGMYCAICRDLYAQGHTVSILPCGDEFHAACISPWLKQQATCPLC 199
            TYE LLE+ + IG   +GLT+EQIA LP+ +   R   R + R   C +C+  Y +G   + LPC   +H+AC++ WL+    CP+C
Sbjct:  191 TYEELLELGEAIGTQSRGLTQEQIASLPVTKYKSRLFSRKKARER-CVVCQMKYKRGDRQTTLPCKHAYHSACVTKWLRINKACPIC 276          
BLAST of Gchil7578.t1 vs. uniprot
Match: UPI001EE52401 (probable E3 ubiquitin-protein ligase RHG1A isoform X1 n=3 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE52401)

HSP 1 Score: 75.9 bits (185), Expect = 1.450e-12
Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 0
Query:  105 HVPTRAVPTYEMLLEIEDRIGYAKQ-GLTEEQIAILPIYQCDDRDCERHERRGMYCAICRDLYAQGHTVSILPCGDEFHAACISPWLKQQATCPLCR 200
            H P      YE LLE+ + +G  KQ G+T+ ++  LPI +    D   ++     C IC   Y +G ++ ILPC  EFH  CI  WLK  ATCP+CR
Sbjct:  396 HSPVGDGNDYEELLELAESLGEVKQKGMTKSELNRLPIRKFKSSDSSGNDTTD--CLICMCDYQEGDSLRILPCCHEFHQPCIDKWLKNTATCPICR 490          
BLAST of Gchil7578.t1 vs. uniprot
Match: UPI001EB076B2 (uncharacterized protein LOC124141063 isoform X1 n=3 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB076B2)

HSP 1 Score: 75.9 bits (185), Expect = 1.700e-12
Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 0
Query:  105 HVPTRAVPTYEMLLEIEDRIGYAKQ-GLTEEQIAILPIYQCDDRDCERHERRGMYCAICRDLYAQGHTVSILPCGDEFHAACISPWLKQQATCPLCR 200
            H P      YE LLE+ + +G  KQ G+T+ ++  LPI +    D   ++     C IC   Y +G ++ ILPC  EFH  CI  WLK  ATCP+CR
Sbjct:  787 HSPVGDGNDYEELLELAESLGEVKQKGMTKSELNRLPIRKFKSSDSSGNDTSD--CLICMCDYQEGDSLRILPCCHEFHQPCIDKWLKNTATCPICR 881          
BLAST of Gchil7578.t1 vs. uniprot
Match: A0A1X7V4M0_AMPQE (RING-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7V4M0_AMPQE)

HSP 1 Score: 75.1 bits (183), Expect = 2.050e-12
Identity = 37/89 (41.57%), Postives = 51/89 (57.30%), Query Frame = 0
Query:  113 TYEMLLEIEDRIGYAKQ-GLTEEQIAILPIYQCDDRDCERHERRGMYCAICRDLYAQGHTVSILPCGDEFHAACISPWLKQQATCPLCR 200
            +YE  L++ +R+G  +  GL ++ I  LP+        E  +     C IC   Y    T+ ILPC  E+H+ACISPWLKQQ TCP+CR
Sbjct:  286 SYEDWLDLAERLGPGRPLGLPDDAIDALPVRT--HLSSESSDPAKTNCVICMMDYEDQDTIKILPCSHEYHSACISPWLKQQRTCPICR 372          
BLAST of Gchil7578.t1 vs. uniprot
Match: A0A7I8LIG3_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LIG3_SPIIN)

HSP 1 Score: 70.1 bits (170), Expect = 7.440e-12
Identity = 33/98 (33.67%), Postives = 54/98 (55.10%), Query Frame = 0
Query:  113 TYEMLLEIEDRIGYAKQGLTEEQIAILPIYQCDDRDCERHERRGMY----------CAICRDLYAQGHTVSILPCGDEFHAACISPWLKQQATCPLCR 200
            +YE LLE+E++IG A  GL+E+ +             +++ +R  Y          C IC++ YA G  + +L CG +FHA+C+  WL Q+  CP+C+
Sbjct:   55 SYEELLELEEQIGKANAGLSEDTV-------------QKNLKRMKYPSSAAYKAESCCICQEDYADGEELGVLTCGHDFHASCVGKWLVQKNFCPICK 139          
BLAST of Gchil7578.t1 vs. uniprot
Match: A0A7C9DLL1_OPUST (RING-type domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9DLL1_OPUST)

HSP 1 Score: 71.6 bits (174), Expect = 1.120e-11
Identity = 31/87 (35.63%), Postives = 50/87 (57.47%), Query Frame = 0
Query:  113 TYEMLLEIEDRIGYAKQGLTEEQIAILPIYQCDDRDCERHERRGMYCAICRDLYAQGHTVSILPCGDEFHAACISPWLKQQATCPLC 199
            +YE LLE+ + +G   +GL++EQIA+LP+ +       R + R   C IC+  Y +G  +  LPC  ++H +C + WL     CP+C
Sbjct:  143 SYEELLELGETVGTQSRGLSQEQIALLPVSKFKTSILLRKKSRSERCVICQMEYKRGDRLITLPCKHKYHVSCGTKWLSINKACPIC 229          
BLAST of Gchil7578.t1 vs. uniprot
Match: R7UWM6_CAPTE (RING-type domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UWM6_CAPTE)

HSP 1 Score: 71.2 bits (173), Expect = 2.260e-11
Identity = 31/57 (54.39%), Postives = 35/57 (61.40%), Query Frame = 0
Query:  145 DDRDCERHERRGMYCAICRDLYAQGHTVSILPCGDEFHAACISPWLKQQATCPLCRC 201
            DDRD          CAIC DLY     + ILPCG EFHA+C+ PWL  Q TCPLC+C
Sbjct:  213 DDRDT---------CAICLDLYKPKQRLRILPCGHEFHASCVDPWLLSQQTCPLCKC 260          
BLAST of Gchil7578.t1 vs. uniprot
Match: A0A2G9HER0_9LAMI (Anaphase-promoting complex (APC), subunit 11 n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HER0_9LAMI)

HSP 1 Score: 70.9 bits (172), Expect = 2.450e-11
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 0
Query:  113 TYEMLLEIEDRIGYAKQGLTEEQIAILPIYQCDDRDCERHERRGMYCAICRDLYAQGHTVSILPCGDEFHAACISPWLKQQATCPLC 199
            TYE LLE+ + +G   +GL+++QIA+LPI +       R + RG  C IC+  Y +G     LPC   +H  C S WL     CP+C
Sbjct:  154 TYEELLELGEAVGTQSRGLSQDQIALLPISKFKCGLFSRKKFRGERCVICQMEYKRGDRRMTLPCKHAYHTDCGSRWLSINKACPIC 240          
BLAST of Gchil7578.t1 vs. uniprot
Match: UPI000772C44F (E3 ubiquitin ligase BIG BROTHER isoform X1 n=2 Tax=Ricinus communis TaxID=3988 RepID=UPI000772C44F)

HSP 1 Score: 70.5 bits (171), Expect = 3.270e-11
Identity = 32/87 (36.78%), Postives = 48/87 (55.17%), Query Frame = 0
Query:  113 TYEMLLEIEDRIGYAKQGLTEEQIAILPIYQCDDRDCERHERRGMYCAICRDLYAQGHTVSILPCGDEFHAACISPWLKQQATCPLC 199
            +YE LLE+ + +G   +GL++EQIA+LP+ +       R + R   C IC+  Y +G    ILPC   +H  C + WL     CP+C
Sbjct:  151 SYEELLELGEAVGMQSRGLSQEQIAMLPVSKYKCSFFSRRKSRSERCVICQMEYKRGDRRIILPCKHGYHVGCGTRWLSINKACPIC 237          
The following BLAST results are available for this feature:
BLAST of Gchil7578.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ITL0_9FLOR1.780e-7662.96Putative E3 ubiquitin-protein ligase HIP1 n=1 Tax=... [more]
UPI001C4D2FEA3.360e-1340.23E3 ubiquitin-protein ligase BIG BROTHER-like n=2 T... [more]
UPI001EE524011.450e-1240.21probable E3 ubiquitin-protein ligase RHG1A isoform... [more]
UPI001EB076B21.700e-1240.21uncharacterized protein LOC124141063 isoform X1 n=... [more]
A0A1X7V4M0_AMPQE2.050e-1241.57RING-type domain-containing protein n=1 Tax=Amphim... [more]
A0A7I8LIG3_SPIIN7.440e-1233.67Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A7C9DLL1_OPUST1.120e-1135.63RING-type domain-containing protein n=1 Tax=Opunti... [more]
R7UWM6_CAPTE2.260e-1154.39RING-type domain-containing protein n=1 Tax=Capite... [more]
A0A2G9HER0_9LAMI2.450e-1139.08Anaphase-promoting complex (APC), subunit 11 n=1 T... [more]
UPI000772C44F3.270e-1136.78E3 ubiquitin ligase BIG BROTHER isoform X1 n=2 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 159..199
e-value: 1.9E-4
score: 30.8
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 158..200
e-value: 5.6E-11
score: 42.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 159..200
score: 12.149959
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 120..204
e-value: 1.1E-17
score: 65.5
NoneNo IPR availablePANTHERPTHR22937:SF65E3 UBIQUITIN-PROTEIN LIGASE RNF165coord: 112..200
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..39
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 40..63
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..12
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 64..204
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 159..200
e-value: 3.88108E-18
score: 72.3345
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 158..203
NoneNo IPR availableTMHMMTMhelixcoord: 39..61
IPR045191E3 ubiquitin-protein ligase MBR1/2-likePANTHERPTHR22937E3 UBIQUITIN-PROTEIN LIGASE RNF165coord: 112..200

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:2075326..2075940 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7578.t1Gchil7578.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000007_pilon 2075326..2075940 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7578.t1 ID=Gchil7578.t1|Name=Gchil7578.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=205bp
MAPTALHAAHALDAPSVASKLATAHNATITTPSSSSADLFVVVIVSVFLF
LAASILRLVPWVVPISSRPRLSAGRALAAASQYEPIAGFANFGYGTLAAV
ATDRHVPTRAVPTYEMLLEIEDRIGYAKQGLTEEQIAILPIYQCDDRDCE
RHERRGMYCAICRDLYAQGHTVSILPCGDEFHAACISPWLKQQATCPLCR
CRFA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR045191MBR1/2-like