Gchil11020.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil11020.t1
Unique Name	Gchil11020.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	711

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000021_pilon	contig	tig00000021_pilon:706329..708461 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	161934.XP_010677514.1
PFAMs	DEAD,HRDC,Helicase_C,RQC,RecQ_Zn_bind
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K10899
GOs	GO:0000724,GO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009378,GO:0009987,GO:0016043,GO:0016462,GO:0016592,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363
Evalue	4.3e-123
EggNOG OGs	COG0514@1\|root,KOG0353@2759\|Eukaryota,37QA8@33090\|Viridiplantae,3GEUX@35493\|Streptophyta
EC	3.6.4.12
Description	Belongs to the helicase family. RecQ subfamily
COG category	L
BRITE	ko00000,ko01000,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil11020	Gchil11020	Gracilaria chilensis NLEC103_M9 male	gene	tig00000021_pilon 706329..708461 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11020.t1.stop1	Gchil11020.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000021_pilon 706329..706331 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11020.t1.CDS1	Gchil11020.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000021_pilon 706329..708461 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11020.t1.exon1	Gchil11020.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000021_pilon 706329..708461 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11020.t1.start1	Gchil11020.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000021_pilon 708459..708461 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11020.t1	Gchil11020.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000021_pilon 706329..708461 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000021_pilon:706329..708461-
coding sequence from alignment at tig00000021_pilon:706329..708461-

mRNA sequence

>Gchil11020.t1 ID=Gchil11020.t1|Name=Gchil11020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=711bp
MSLHEEHKPRDLLAQDELLQKLRQNVFEKRKQIDDAKLRLTHLSEQLVEL
ERQQSKRQKLLKHQADAAFDWLQPCPWDSLLEQTSANVFGISSFRPSQHE
ALNATLMKRDVFAILPTGAGKSLIYQLAAVVDGGLTLVVSPLISLSMDQR
AALKNCNINAECLHSELNKKKQKAIYDFFLPPAAFNKTSKHPRKHKRSTD
EWVPDDVQPMVLFVTPEQVVRSKRLLSRLEKMHESGHLSRICVDEAHCCS
SWGHDFRPEYRKLGILKRQCPSTPIIALTATSNSRTVEDVCSILEIPHAV
IFRSGVNRSNLFYEVRPKADTDPAVIADITTWIRTDFRDQCGIIYVLSRK
DADRYATGLAEHGVNASCYHADMSISDRAEVHDMWSTGHLSIVVATIAFG
LGIDNPHVRFIIHATMAASLEAYYQESGRAGRDGLPARCIVLHKPKDFGR
MSAFVGDKGPVRLQKMYDMYKYASSRGLGSGTLCRREVIVNSFGEKMPKR
TTEQCKSCCDLCESRLGLMVSRLQSIDVTDVAKEMLKMIWEFVQLYPGKK
TTILQFANNCGKSGPRIGEQAKRRDKAMVSAMDVNTRVSIINEMVLCGAL
QEYHRHSSYAVNPYVTTGNVDAVLKKNVIEVAVWKKNDVHSLWPKAKRRR
TSPKYDEDCQVIMIVDSDEDLSGHPKQDAKEENKVDENLRATSDNNERES
RSEQNGSLQK*

spliced messenger RNA

>Gchil11020.t1 ID=Gchil11020.t1|Name=Gchil11020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2133bp|location=Sequence derived from alignment at tig00000021_pilon:706329..708461- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTTGCACGAAGAGCATAAACCGCGAGACTTGCTTGCGCAAGATGA
GCTCCTCCAAAAGCTGCGACAAAATGTATTCGAGAAGCGAAAACAAATTG
ACGATGCCAAACTCCGTCTCACTCACCTTTCTGAACAGCTTGTCGAGCTC
GAGCGCCAGCAATCGAAGCGACAGAAGCTTTTGAAACATCAGGCCGATGC
TGCCTTCGATTGGTTACAACCCTGTCCCTGGGACTCTCTTCTTGAACAAA
CCTCAGCTAATGTGTTTGGCATTAGCTCTTTCCGTCCCTCGCAGCATGAA
GCATTGAATGCAACGCTAATGAAACGCGATGTGTTCGCTATACTGCCTAC
TGGTGCGGGCAAGAGTCTTATATACCAACTTGCAGCTGTCGTTGACGGTG
GGCTCACGCTTGTGGTTTCACCTCTTATCTCGCTCTCTATGGATCAGCGA
GCCGCTCTCAAAAATTGCAACATTAATGCAGAATGCCTCCACTCCGAGCT
GAACAAGAAGAAACAAAAAGCCATATACGATTTTTTTTTGCCACCGGCTG
CGTTCAACAAAACTTCCAAGCATCCCCGTAAACATAAAAGAAGCACTGAT
GAATGGGTACCCGACGATGTACAGCCAATGGTGTTATTCGTCACCCCCGA
ACAAGTCGTCCGCTCGAAAAGACTCTTGTCACGCTTGGAAAAGATGCATG
AAAGCGGCCACTTGTCCAGAATTTGTGTCGATGAAGCGCACTGTTGCTCC
TCGTGGGGACACGATTTTCGACCCGAGTACAGAAAACTAGGTATTTTAAA
AAGACAATGCCCCTCAACCCCGATCATAGCGCTCACGGCCACCAGTAACT
CTCGGACCGTGGAAGACGTTTGTTCCATCCTTGAGATACCCCACGCAGTC
ATTTTTCGGAGCGGCGTCAATAGATCCAATCTGTTTTACGAAGTAAGGCC
CAAAGCAGATACTGACCCTGCTGTCATCGCCGACATCACTACGTGGATTA
GAACAGATTTCAGAGATCAATGTGGTATCATTTACGTGCTTTCACGGAAG
GATGCGGACAGGTATGCTACAGGCCTTGCTGAACACGGCGTTAATGCTTC
TTGTTATCACGCCGATATGAGCATTTCTGACCGCGCAGAGGTACACGATA
TGTGGAGCACGGGGCACTTGAGCATTGTCGTGGCCACCATAGCATTCGGT
CTTGGAATTGATAATCCACATGTCCGCTTCATTATTCATGCCACAATGGC
CGCCAGCCTAGAGGCCTATTATCAAGAAAGCGGTCGTGCTGGCCGCGATG
GGCTCCCCGCCAGATGCATCGTGCTGCATAAGCCAAAGGACTTCGGAAGG
ATGAGTGCTTTTGTTGGAGACAAAGGACCAGTTCGTCTTCAAAAGATGTA
CGATATGTACAAATATGCGTCTTCAAGGGGCTTAGGTAGCGGCACTTTGT
GCCGACGTGAAGTGATCGTCAATTCTTTTGGAGAAAAAATGCCGAAGCGG
ACAACAGAACAATGCAAAAGTTGTTGTGACTTGTGCGAGTCAAGATTAGG
ACTAATGGTTTCCAGATTGCAGTCGATTGATGTAACAGATGTTGCGAAGG
AAATGCTAAAGATGATTTGGGAATTTGTTCAACTCTATCCGGGGAAGAAG
ACTACAATTCTTCAGTTTGCAAACAATTGTGGCAAGTCAGGGCCCCGAAT
CGGCGAGCAAGCCAAGCGTAGAGATAAGGCGATGGTGAGCGCCATGGACG
TGAACACTCGAGTGTCGATCATCAATGAGATGGTGTTATGCGGTGCATTG
CAAGAATACCACAGGCATTCAAGCTACGCTGTGAACCCCTATGTAACTAC
TGGAAACGTTGACGCCGTACTGAAGAAAAATGTGATTGAAGTGGCTGTAT
GGAAGAAGAACGACGTTCATAGTTTATGGCCAAAAGCAAAGCGCCGTAGA
ACTTCACCCAAGTACGACGAAGATTGTCAAGTCATCATGATTGTAGATAG
TGACGAAGATCTTTCAGGTCACCCTAAACAAGATGCCAAAGAAGAGAACA
AGGTAGATGAGAATTTGAGAGCGACGAGTGACAACAACGAGCGAGAGTCT
AGATCAGAACAAAATGGTTCTTTGCAAAAATGA

protein sequence of Gchil11020.t1

>Gchil11020.t1 ID=Gchil11020.t1|Name=Gchil11020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=711bp
MSLHEEHKPRDLLAQDELLQKLRQNVFEKRKQIDDAKLRLTHLSEQLVEL
ERQQSKRQKLLKHQADAAFDWLQPCPWDSLLEQTSANVFGISSFRPSQHE
ALNATLMKRDVFAILPTGAGKSLIYQLAAVVDGGLTLVVSPLISLSMDQR
AALKNCNINAECLHSELNKKKQKAIYDFFLPPAAFNKTSKHPRKHKRSTD
EWVPDDVQPMVLFVTPEQVVRSKRLLSRLEKMHESGHLSRICVDEAHCCS
SWGHDFRPEYRKLGILKRQCPSTPIIALTATSNSRTVEDVCSILEIPHAV
IFRSGVNRSNLFYEVRPKADTDPAVIADITTWIRTDFRDQCGIIYVLSRK
DADRYATGLAEHGVNASCYHADMSISDRAEVHDMWSTGHLSIVVATIAFG
LGIDNPHVRFIIHATMAASLEAYYQESGRAGRDGLPARCIVLHKPKDFGR
MSAFVGDKGPVRLQKMYDMYKYASSRGLGSGTLCRREVIVNSFGEKMPKR
TTEQCKSCCDLCESRLGLMVSRLQSIDVTDVAKEMLKMIWEFVQLYPGKK
TTILQFANNCGKSGPRIGEQAKRRDKAMVSAMDVNTRVSIINEMVLCGAL
QEYHRHSSYAVNPYVTTGNVDAVLKKNVIEVAVWKKNDVHSLWPKAKRRR
TSPKYDEDCQVIMIVDSDEDLSGHPKQDAKEENKVDENLRATSDNNERES
RSEQNGSLQK*

mRNA from alignment at tig00000021_pilon:706329..708461-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil11020.t1 ID=Gchil11020.t1|Name=Gchil11020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2133bp|location=Sequence derived from alignment at tig00000021_pilon:706329..708461- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTTGCACGAAGAGCATAAACCGCGAGACTTGCTTGCGCAAGATGA
GCTCCTCCAAAAGCTGCGACAAAATGTATTCGAGAAGCGAAAACAAATTG
ACGATGCCAAACTCCGTCTCACTCACCTTTCTGAACAGCTTGTCGAGCTC
GAGCGCCAGCAATCGAAGCGACAGAAGCTTTTGAAACATCAGGCCGATGC
TGCCTTCGATTGGTTACAACCCTGTCCCTGGGACTCTCTTCTTGAACAAA
CCTCAGCTAATGTGTTTGGCATTAGCTCTTTCCGTCCCTCGCAGCATGAA
GCATTGAATGCAACGCTAATGAAACGCGATGTGTTCGCTATACTGCCTAC
TGGTGCGGGCAAGAGTCTTATATACCAACTTGCAGCTGTCGTTGACGGTG
GGCTCACGCTTGTGGTTTCACCTCTTATCTCGCTCTCTATGGATCAGCGA
GCCGCTCTCAAAAATTGCAACATTAATGCAGAATGCCTCCACTCCGAGCT
GAACAAGAAGAAACAAAAAGCCATATACGATTTTTTTTTGCCACCGGCTG
CGTTCAACAAAACTTCCAAGCATCCCCGTAAACATAAAAGAAGCACTGAT
GAATGGGTACCCGACGATGTACAGCCAATGGTGTTATTCGTCACCCCCGA
ACAAGTCGTCCGCTCGAAAAGACTCTTGTCACGCTTGGAAAAGATGCATG
AAAGCGGCCACTTGTCCAGAATTTGTGTCGATGAAGCGCACTGTTGCTCC
TCGTGGGGACACGATTTTCGACCCGAGTACAGAAAACTAGGTATTTTAAA
AAGACAATGCCCCTCAACCCCGATCATAGCGCTCACGGCCACCAGTAACT
CTCGGACCGTGGAAGACGTTTGTTCCATCCTTGAGATACCCCACGCAGTC
ATTTTTCGGAGCGGCGTCAATAGATCCAATCTGTTTTACGAAGTAAGGCC
CAAAGCAGATACTGACCCTGCTGTCATCGCCGACATCACTACGTGGATTA
GAACAGATTTCAGAGATCAATGTGGTATCATTTACGTGCTTTCACGGAAG
GATGCGGACAGGTATGCTACAGGCCTTGCTGAACACGGCGTTAATGCTTC
TTGTTATCACGCCGATATGAGCATTTCTGACCGCGCAGAGGTACACGATA
TGTGGAGCACGGGGCACTTGAGCATTGTCGTGGCCACCATAGCATTCGGT
CTTGGAATTGATAATCCACATGTCCGCTTCATTATTCATGCCACAATGGC
CGCCAGCCTAGAGGCCTATTATCAAGAAAGCGGTCGTGCTGGCCGCGATG
GGCTCCCCGCCAGATGCATCGTGCTGCATAAGCCAAAGGACTTCGGAAGG
ATGAGTGCTTTTGTTGGAGACAAAGGACCAGTTCGTCTTCAAAAGATGTA
CGATATGTACAAATATGCGTCTTCAAGGGGCTTAGGTAGCGGCACTTTGT
GCCGACGTGAAGTGATCGTCAATTCTTTTGGAGAAAAAATGCCGAAGCGG
ACAACAGAACAATGCAAAAGTTGTTGTGACTTGTGCGAGTCAAGATTAGG
ACTAATGGTTTCCAGATTGCAGTCGATTGATGTAACAGATGTTGCGAAGG
AAATGCTAAAGATGATTTGGGAATTTGTTCAACTCTATCCGGGGAAGAAG
ACTACAATTCTTCAGTTTGCAAACAATTGTGGCAAGTCAGGGCCCCGAAT
CGGCGAGCAAGCCAAGCGTAGAGATAAGGCGATGGTGAGCGCCATGGACG
TGAACACTCGAGTGTCGATCATCAATGAGATGGTGTTATGCGGTGCATTG
CAAGAATACCACAGGCATTCAAGCTACGCTGTGAACCCCTATGTAACTAC
TGGAAACGTTGACGCCGTACTGAAGAAAAATGTGATTGAAGTGGCTGTAT
GGAAGAAGAACGACGTTCATAGTTTATGGCCAAAAGCAAAGCGCCGTAGA
ACTTCACCCAAGTACGACGAAGATTGTCAAGTCATCATGATTGTAGATAG
TGACGAAGATCTTTCAGGTCACCCTAAACAAGATGCCAAAGAAGAGAACA
AGGTAGATGAGAATTTGAGAGCGACGAGTGACAACAACGAGCGAGAGTCT
AGATCAGAACAAAATGGTTCTTTGCAAAAATGA

Coding sequence (CDS) from alignment at tig00000021_pilon:706329..708461-

>Gchil11020.t1 ID=Gchil11020.t1|Name=Gchil11020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2133bp|location=Sequence derived from alignment at tig00000021_pilon:706329..708461- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTTGCACGAAGAGCATAAACCGCGAGACTTGCTTGCGCAAGATGA
GCTCCTCCAAAAGCTGCGACAAAATGTATTCGAGAAGCGAAAACAAATTG
ACGATGCCAAACTCCGTCTCACTCACCTTTCTGAACAGCTTGTCGAGCTC
GAGCGCCAGCAATCGAAGCGACAGAAGCTTTTGAAACATCAGGCCGATGC
TGCCTTCGATTGGTTACAACCCTGTCCCTGGGACTCTCTTCTTGAACAAA
CCTCAGCTAATGTGTTTGGCATTAGCTCTTTCCGTCCCTCGCAGCATGAA
GCATTGAATGCAACGCTAATGAAACGCGATGTGTTCGCTATACTGCCTAC
TGGTGCGGGCAAGAGTCTTATATACCAACTTGCAGCTGTCGTTGACGGTG
GGCTCACGCTTGTGGTTTCACCTCTTATCTCGCTCTCTATGGATCAGCGA
GCCGCTCTCAAAAATTGCAACATTAATGCAGAATGCCTCCACTCCGAGCT
GAACAAGAAGAAACAAAAAGCCATATACGATTTTTTTTTGCCACCGGCTG
CGTTCAACAAAACTTCCAAGCATCCCCGTAAACATAAAAGAAGCACTGAT
GAATGGGTACCCGACGATGTACAGCCAATGGTGTTATTCGTCACCCCCGA
ACAAGTCGTCCGCTCGAAAAGACTCTTGTCACGCTTGGAAAAGATGCATG
AAAGCGGCCACTTGTCCAGAATTTGTGTCGATGAAGCGCACTGTTGCTCC
TCGTGGGGACACGATTTTCGACCCGAGTACAGAAAACTAGGTATTTTAAA
AAGACAATGCCCCTCAACCCCGATCATAGCGCTCACGGCCACCAGTAACT
CTCGGACCGTGGAAGACGTTTGTTCCATCCTTGAGATACCCCACGCAGTC
ATTTTTCGGAGCGGCGTCAATAGATCCAATCTGTTTTACGAAGTAAGGCC
CAAAGCAGATACTGACCCTGCTGTCATCGCCGACATCACTACGTGGATTA
GAACAGATTTCAGAGATCAATGTGGTATCATTTACGTGCTTTCACGGAAG
GATGCGGACAGGTATGCTACAGGCCTTGCTGAACACGGCGTTAATGCTTC
TTGTTATCACGCCGATATGAGCATTTCTGACCGCGCAGAGGTACACGATA
TGTGGAGCACGGGGCACTTGAGCATTGTCGTGGCCACCATAGCATTCGGT
CTTGGAATTGATAATCCACATGTCCGCTTCATTATTCATGCCACAATGGC
CGCCAGCCTAGAGGCCTATTATCAAGAAAGCGGTCGTGCTGGCCGCGATG
GGCTCCCCGCCAGATGCATCGTGCTGCATAAGCCAAAGGACTTCGGAAGG
ATGAGTGCTTTTGTTGGAGACAAAGGACCAGTTCGTCTTCAAAAGATGTA
CGATATGTACAAATATGCGTCTTCAAGGGGCTTAGGTAGCGGCACTTTGT
GCCGACGTGAAGTGATCGTCAATTCTTTTGGAGAAAAAATGCCGAAGCGG
ACAACAGAACAATGCAAAAGTTGTTGTGACTTGTGCGAGTCAAGATTAGG
ACTAATGGTTTCCAGATTGCAGTCGATTGATGTAACAGATGTTGCGAAGG
AAATGCTAAAGATGATTTGGGAATTTGTTCAACTCTATCCGGGGAAGAAG
ACTACAATTCTTCAGTTTGCAAACAATTGTGGCAAGTCAGGGCCCCGAAT
CGGCGAGCAAGCCAAGCGTAGAGATAAGGCGATGGTGAGCGCCATGGACG
TGAACACTCGAGTGTCGATCATCAATGAGATGGTGTTATGCGGTGCATTG
CAAGAATACCACAGGCATTCAAGCTACGCTGTGAACCCCTATGTAACTAC
TGGAAACGTTGACGCCGTACTGAAGAAAAATGTGATTGAAGTGGCTGTAT
GGAAGAAGAACGACGTTCATAGTTTATGGCCAAAAGCAAAGCGCCGTAGA
ACTTCACCCAAGTACGACGAAGATTGTCAAGTCATCATGATTGTAGATAG
TGACGAAGATCTTTCAGGTCACCCTAAACAAGATGCCAAAGAAGAGAACA
AGGTAGATGAGAATTTGAGAGCGACGAGTGACAACAACGAGCGAGAGTCT
AGATCAGAACAAAATGGTTCTTTGCAAAAATGA