Gchil10987.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10987.t1
Unique NameGchil10987.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length428
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000021_piloncontigtig00000021_pilon:71321..72708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10987Gchil10987Gracilaria chilensis NLEC103_M9 malegenetig00000021_pilon 71321..72708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10987.t1Gchil10987.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000021_pilon 71321..72708 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10987.t1.start1Gchil10987.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000021_pilon 71321..71323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10987.t1.CDS1Gchil10987.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000021_pilon 71321..72141 +
Gchil10987.t1.CDS2Gchil10987.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000021_pilon 72246..72708 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10987.t1.exon1Gchil10987.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000021_pilon 71321..72141 +
Gchil10987.t1.exon2Gchil10987.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000021_pilon 72246..72708 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10987.t1.intron1Gchil10987.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000021_pilon 72142..72245 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10987.t1.stop1Gchil10987.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000021_pilon 72706..72708 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10987.t1 ID=Gchil10987.t1|Name=Gchil10987.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=428bp
MVEKHHLQLDNRMDTMETVIKEIRQALRQIQTKLEYPTTNMVNTDLTQHP
LNTTQSTHLGPRQHIQLGFQSTPQQGAPQQTDLLTMARELAEMRVEMETL
RNENQRLLRRTEKNYNPQHNTDKKKENQAGMGQKQQSVPQPVQPDNSQTQ
TSEHPRKTWDEIAAHNAPIMRVLEPKMRDRISKAKVLLEENNLASTPFWV
RTARPVSIYFAGMHRGPTGRYRRAITTAIPPRLLHGISFVGRSIGELIVQ
DSTVDRAIVTMRALGFRHLPEFTRNIIAKLWYTEAADRLQARFPAVFTKE
GVLHDQQLCKQLQEQRTAPHDGPLTNSASRDPDNVPEMAQNFSSDLESSS
TGTPTAANTDGFTLVTRKRRRPSTGSSPIKQPTLNHWTYETQLSATPPNC
RVSTTNGRTHSAGEEFNANYGFDPSNP*
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spliced messenger RNA

>Gchil10987.t1 ID=Gchil10987.t1|Name=Gchil10987.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00000021_pilon:71321..72708+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGAGAAGCACCACCTACAACTGGACAACCGTATGGACACGATGGA
AACTGTGATAAAGGAAATTCGTCAAGCACTTCGTCAAATCCAAACCAAGC
TCGAATATCCCACCACAAATATGGTCAACACGGATTTGACCCAACACCCA
CTGAACACAACGCAGAGCACTCACCTAGGCCCTCGTCAACACATACAGCT
TGGCTTCCAAAGTACTCCCCAACAAGGCGCACCCCAGCAAACAGACCTCC
TAACGATGGCTAGAGAACTCGCCGAAATGCGTGTGGAAATGGAAACCCTA
CGCAACGAGAACCAACGCCTTCTCCGAAGAACGGAGAAGAACTACAACCC
TCAACACAACACAGACAAGAAAAAAGAAAACCAGGCCGGAATGGGACAAA
AACAGCAAAGCGTACCCCAACCCGTCCAACCCGACAATTCGCAGACTCAA
ACGTCTGAACATCCTCGCAAGACGTGGGATGAAATCGCAGCACACAACGC
GCCAATCATGCGGGTACTCGAACCCAAAATGAGAGACAGAATCTCGAAAG
CGAAAGTACTCCTCGAAGAGAACAACTTGGCATCCACCCCATTTTGGGTG
CGAACGGCCAGACCAGTGAGCATCTACTTCGCCGGAATGCACAGAGGGCC
GACTGGTCGTTACAGACGAGCCATAACCACTGCCATACCTCCCCGCCTCC
TACACGGCATATCCTTCGTCGGACGTAGCATCGGCGAACTCATCGTCCAA
GACTCCACTGTGGACCGGGCGATCGTAACAATGCGCGCACTAGGCTTTCG
CCACCTCCCCGAATTCACCCGCAACATCATCGCCAAGCTATGGTACACCG
AAGCGGCTGACAGGCTGCAAGCGCGTTTTCCAGCGGTGTTCACGAAAGAA
GGCGTTCTACACGACCAACAGCTCTGCAAACAACTGCAGGAACAACGCAC
GGCACCCCACGATGGACCTCTTACAAACAGCGCTTCGCGCGATCCAGACA
ATGTACCCGAGATGGCACAGAATTTCTCGTCAGACTTGGAATCCAGCTCA
ACTGGCACCCCCACTGCAGCCAACACCGATGGGTTCACGCTGGTCACACG
CAAAAGGCGCAGACCAAGCACAGGCTCATCACCAATAAAACAGCCGACCC
TCAACCACTGGACGTACGAAACCCAGCTTTCCGCAACGCCTCCGAACTGC
CGGGTCAGCACAACGAATGGAAGAACGCACTCAGCAGGCGAAGAATTCAA
TGCCAACTACGGATTCGATCCCTCCAACCCCTGA
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protein sequence of Gchil10987.t1

>Gchil10987.t1 ID=Gchil10987.t1|Name=Gchil10987.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=428bp
MVEKHHLQLDNRMDTMETVIKEIRQALRQIQTKLEYPTTNMVNTDLTQHP
LNTTQSTHLGPRQHIQLGFQSTPQQGAPQQTDLLTMARELAEMRVEMETL
RNENQRLLRRTEKNYNPQHNTDKKKENQAGMGQKQQSVPQPVQPDNSQTQ
TSEHPRKTWDEIAAHNAPIMRVLEPKMRDRISKAKVLLEENNLASTPFWV
RTARPVSIYFAGMHRGPTGRYRRAITTAIPPRLLHGISFVGRSIGELIVQ
DSTVDRAIVTMRALGFRHLPEFTRNIIAKLWYTEAADRLQARFPAVFTKE
GVLHDQQLCKQLQEQRTAPHDGPLTNSASRDPDNVPEMAQNFSSDLESSS
TGTPTAANTDGFTLVTRKRRRPSTGSSPIKQPTLNHWTYETQLSATPPNC
RVSTTNGRTHSAGEEFNANYGFDPSNP*
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mRNA from alignment at tig00000021_pilon:71321..72708+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10987.t1 ID=Gchil10987.t1|Name=Gchil10987.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1388bp|location=Sequence derived from alignment at tig00000021_pilon:71321..72708+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTAGAGAAGCACCACCTACAACTGGACAACCGTATGGACACGATGGA
AACTGTGATAAAGGAAATTCGTCAAGCACTTCGTCAAATCCAAACCAAGC
TCGAATATCCCACCACAAATATGGTCAACACGGATTTGACCCAACACCCA
CTGAACACAACGCAGAGCACTCACCTAGGCCCTCGTCAACACATACAGCT
TGGCTTCCAAAGTACTCCCCAACAAGGCGCACCCCAGCAAACAGACCTCC
TAACGATGGCTAGAGAACTCGCCGAAATGCGTGTGGAAATGGAAACCCTA
CGCAACGAGAACCAACGCCTTCTCCGAAGAACGGAGAAGAACTACAACCC
TCAACACAACACAGACAAGAAAAAAGAAAACCAGGCCGGAATGGGACAAA
AACAGCAAAGCGTACCCCAACCCGTCCAACCCGACAATTCGCAGACTCAA
ACGTCTGAACATCCTCGCAAGACGTGGGATGAAATCGCAGCACACAACGC
GCCAATCATGCGGGTACTCGAACCCAAAATGAGAGACAGAATCTCGAAAG
CGAAAGTACTCCTCGAAGAGAACAACTTGGCATCCACCCCATTTTGGGTG
CGAACGGCCAGACCAGTGAGCATCTACTTCGCCGGAATGCACAGAGGGCC
GACTGGTCGTTACAGACGAGCCATAACCACTGCCATACCTCCCCGCCTCC
TACACGGCATATCCTTCGTCGGACGTAGCATCGGCGAACTCATCGTCCAA
GACTCCACTGTGGACCGGGCGATCGTAACAATGCGCGCACTAGGCTTTCG
CCACCTCCCCGAATTCACCCGGTAATTGACGCACGCTTCAACAACAAAGC
CCTGTCAACAGAAGACAACATACATCGCAACGCGTCAGCATGCGCCGCAC
GATATCACCGCTGCTCAAACACAAGCAACATCATCGCCAAGCTATGGTAC
ACCGAAGCGGCTGACAGGCTGCAAGCGCGTTTTCCAGCGGTGTTCACGAA
AGAAGGCGTTCTACACGACCAACAGCTCTGCAAACAACTGCAGGAACAAC
GCACGGCACCCCACGATGGACCTCTTACAAACAGCGCTTCGCGCGATCCA
GACAATGTACCCGAGATGGCACAGAATTTCTCGTCAGACTTGGAATCCAG
CTCAACTGGCACCCCCACTGCAGCCAACACCGATGGGTTCACGCTGGTCA
CACGCAAAAGGCGCAGACCAAGCACAGGCTCATCACCAATAAAACAGCCG
ACCCTCAACCACTGGACGTACGAAACCCAGCTTTCCGCAACGCCTCCGAA
CTGCCGGGTCAGCACAACGAATGGAAGAACGCACTCAGCAGGCGAAGAAT
TCAATGCCAACTACGGATTCGATCCCTCCAACCCCTGA
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Coding sequence (CDS) from alignment at tig00000021_pilon:71321..72708+

>Gchil10987.t1 ID=Gchil10987.t1|Name=Gchil10987.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1284bp|location=Sequence derived from alignment at tig00000021_pilon:71321..72708+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTAGAGAAGCACCACCTACAACTGGACAACCGTATGGACACGATGGA
AACTGTGATAAAGGAAATTCGTCAAGCACTTCGTCAAATCCAAACCAAGC
TCGAATATCCCACCACAAATATGGTCAACACGGATTTGACCCAACACCCA
CTGAACACAACGCAGAGCACTCACCTAGGCCCTCGTCAACACATACAGCT
TGGCTTCCAAAGTACTCCCCAACAAGGCGCACCCCAGCAAACAGACCTCC
TAACGATGGCTAGAGAACTCGCCGAAATGCGTGTGGAAATGGAAACCCTA
CGCAACGAGAACCAACGCCTTCTCCGAAGAACGGAGAAGAACTACAACCC
TCAACACAACACAGACAAGAAAAAAGAAAACCAGGCCGGAATGGGACAAA
AACAGCAAAGCGTACCCCAACCCGTCCAACCCGACAATTCGCAGACTCAA
ACGTCTGAACATCCTCGCAAGACGTGGGATGAAATCGCAGCACACAACGC
GCCAATCATGCGGGTACTCGAACCCAAAATGAGAGACAGAATCTCGAAAG
CGAAAGTACTCCTCGAAGAGAACAACTTGGCATCCACCCCATTTTGGGTG
CGAACGGCCAGACCAGTGAGCATCTACTTCGCCGGAATGCACAGAGGGCC
GACTGGTCGTTACAGACGAGCCATAACCACTGCCATACCTCCCCGCCTCC
TACACGGCATATCCTTCGTCGGACGTAGCATCGGCGAACTCATCGTCCAA
GACTCCACTGTGGACCGGGCGATCGTAACAATGCGCGCACTAGGCTTTCG
CCACCTCCCCGAATTCACCCGCAACATCATCGCCAAGCTATGGTACACCG
AAGCGGCTGACAGGCTGCAAGCGCGTTTTCCAGCGGTGTTCACGAAAGAA
GGCGTTCTACACGACCAACAGCTCTGCAAACAACTGCAGGAACAACGCAC
GGCACCCCACGATGGACCTCTTACAAACAGCGCTTCGCGCGATCCAGACA
ATGTACCCGAGATGGCACAGAATTTCTCGTCAGACTTGGAATCCAGCTCA
ACTGGCACCCCCACTGCAGCCAACACCGATGGGTTCACGCTGGTCACACG
CAAAAGGCGCAGACCAAGCACAGGCTCATCACCAATAAAACAGCCGACCC
TCAACCACTGGACGTACGAAACCCAGCTTTCCGCAACGCCTCCGAACTGC
CGGGTCAGCACAACGAATGGAAGAACGCACTCAGCAGGCGAAGAATTCAA
TGCCAACTACGGATTCGATCCCTCCAACCCCTGA
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